Wall clock time and date at job start Tue Mar 31 2020 06:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34226 * 125.76917 * 2 1 4 4 N 1.39128 * 107.11363 * 179.97438 * 3 2 1 5 5 C 1.36231 * 139.29655 * 179.97438 * 4 3 2 6 6 C 1.33012 * 116.10811 * 180.02562 * 5 4 3 7 7 C 1.46864 * 125.22381 * 179.97438 * 6 5 4 8 8 O 1.21668 * 120.00361 * 8.18574 * 7 6 5 9 9 N 1.34777 * 119.99974 * 188.18709 * 7 6 5 10 10 C 1.46501 * 120.00011 * 359.19044 * 9 7 6 11 11 C 1.46505 * 120.00140 * 179.18519 * 9 7 6 12 12 H 1.09000 * 109.47103 * 0.02562 * 11 9 7 13 13 C 1.52997 * 109.47296 * 240.00450 * 11 9 7 14 14 C 1.50697 * 109.46806 * 120.00030 * 11 9 7 15 15 H 1.07996 * 120.00443 * 0.02562 * 14 11 9 16 16 C 1.37880 * 120.00121 * 180.02562 * 14 11 9 17 17 N 1.31516 * 119.99724 * 0.02562 * 16 14 11 18 18 Si 1.86795 * 120.00234 * 180.02562 * 16 14 11 19 19 H 1.48497 * 109.47637 * 90.00273 * 18 16 14 20 20 H 1.48509 * 109.47027 * 209.99980 * 18 16 14 21 21 H 1.48505 * 109.47222 * 329.99549 * 18 16 14 22 22 S 1.75800 * 109.54709 * 0.24019 * 6 5 4 23 23 C 1.35447 * 106.45477 * 359.97438 * 4 3 2 24 24 N 1.32271 * 108.77933 * 359.97438 * 23 4 3 25 25 H 1.09004 * 109.46760 * 90.00381 * 1 2 3 26 26 H 1.09001 * 109.47248 * 210.00398 * 1 2 3 27 27 H 1.08998 * 109.47283 * 330.00871 * 1 2 3 28 28 H 1.07999 * 126.44298 * 359.97438 * 3 2 1 29 29 H 1.07994 * 121.94568 * 0.02562 * 5 4 3 30 30 H 1.08994 * 109.46925 * 276.40244 * 10 9 7 31 31 H 1.09002 * 109.47068 * 36.40523 * 10 9 7 32 32 H 1.08997 * 109.47011 * 156.40410 * 10 9 7 33 33 H 1.08996 * 109.47572 * 59.99712 * 13 11 9 34 34 H 1.09002 * 109.46850 * 299.99616 * 13 11 9 35 35 H 1.09001 * 109.46880 * 180.02562 * 13 11 9 36 36 H 0.97005 * 119.99953 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2915 1.0891 0.0000 4 7 3.6097 0.6440 0.0006 5 6 4.8724 1.1554 0.0005 6 6 5.8633 0.2681 0.0008 7 6 7.2947 0.5968 0.0003 8 8 7.6543 1.7495 0.1495 9 7 8.2100 -0.3785 -0.1656 10 6 7.7777 -1.7689 -0.3276 11 6 9.6372 -0.0483 -0.1840 12 1 9.7633 1.0260 -0.0496 13 6 10.2408 -0.4691 -1.5254 14 6 10.3363 -0.7793 0.9330 15 1 9.7740 -1.4256 1.5906 16 6 11.6940 -0.6231 1.1156 17 7 12.3788 0.1643 0.3151 18 14 12.5608 -1.5299 2.4997 19 1 13.0302 -2.8504 2.0089 20 1 13.7246 -0.7315 2.9620 21 1 11.6169 -1.7284 3.6288 22 16 5.1963 -1.3585 -0.0057 23 6 3.5577 -0.7094 0.0015 24 7 2.2900 -1.0868 0.0021 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3634 -0.8899 0.5139 27 1 -0.3634 0.8900 0.5137 28 1 1.9616 2.1174 -0.0004 29 1 5.0580 2.2193 0.0002 30 1 7.6045 -2.2121 0.6530 31 1 6.8551 -1.7974 -0.9073 32 1 8.5520 -2.3317 -0.8490 33 1 9.7351 0.0596 -2.3333 34 1 10.1148 -1.5435 -1.6594 35 1 11.3028 -0.2238 -1.5389 36 1 13.3341 0.2739 0.4433 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335767309.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:39 Heat of formation + Delta-G solvation = 50.725982 kcal Electronic energy + Delta-G solvation = -20788.042598 eV Core-core repulsion = 17593.154235 eV Total energy + Delta-G solvation = -3194.888362 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.74483 -40.99344 -37.88394 -37.14942 -34.94389 -32.63814 -31.99140 -31.22485 -28.06538 -27.99694 -27.28577 -25.71304 -23.85806 -21.88978 -21.80082 -19.76479 -19.70008 -18.60040 -17.78473 -17.38349 -17.30204 -16.89613 -16.42537 -16.24391 -15.55261 -14.93003 -14.67518 -14.55337 -14.30030 -14.12895 -14.03482 -13.56886 -13.40158 -13.14956 -13.01185 -12.76639 -12.70184 -12.48339 -12.21305 -12.16141 -12.00102 -11.51102 -11.28098 -11.23061 -11.10334 -10.52623 -9.89679 -9.52799 -8.71757 -8.15396 -6.31664 -0.62293 -0.18917 0.42413 0.90812 1.27852 1.43792 1.45836 1.54988 1.72664 1.97484 2.15933 2.44877 3.13552 3.24199 3.47242 3.56712 4.00108 4.06717 4.19912 4.33965 4.45135 4.65953 4.83068 4.87748 4.88059 4.89585 4.91649 5.01267 5.05063 5.40800 5.47030 5.52100 5.63545 5.73534 5.97768 6.11943 6.53776 6.62154 6.73759 7.04454 7.39893 8.89057 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.035387 B = 0.003694 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.070592 B = 7578.429387 C = 7796.402828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.028 3.972 3 C -0.059 4.059 4 N -0.409 5.409 5 C 0.135 3.865 6 C -0.259 4.259 7 C 0.582 3.418 8 O -0.577 6.577 9 N -0.586 5.586 10 C 0.068 3.932 11 C 0.265 3.735 12 H 0.020 0.980 13 C -0.137 4.137 14 C -0.542 4.542 15 H 0.063 0.937 16 C 0.020 3.980 17 N -0.915 5.915 18 Si 0.963 3.037 19 H -0.267 1.267 20 H -0.287 1.287 21 H -0.272 1.272 22 S 0.267 5.733 23 C 0.087 3.913 24 N -0.489 5.489 25 H 0.086 0.914 26 H 0.071 0.929 27 H 0.100 0.900 28 H 0.220 0.780 29 H 0.207 0.793 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.108 0.892 33 H 0.024 0.976 34 H 0.052 0.948 35 H 0.072 0.928 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.076 -2.109 -2.302 19.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.101 4.101 3 C -0.188 4.188 4 N -0.087 5.087 5 C 0.000 4.000 6 C -0.381 4.381 7 C 0.368 3.632 8 O -0.459 6.459 9 N -0.314 5.314 10 C -0.078 4.078 11 C 0.164 3.836 12 H 0.038 0.962 13 C -0.195 4.195 14 C -0.580 4.580 15 H 0.081 0.919 16 C -0.180 4.180 17 N -0.553 5.553 18 Si 0.788 3.212 19 H -0.192 1.192 20 H -0.213 1.213 21 H -0.196 1.196 22 S 0.520 5.480 23 C -0.276 4.276 24 N -0.215 5.215 25 H 0.104 0.896 26 H 0.090 0.910 27 H 0.119 0.881 28 H 0.237 0.763 29 H 0.223 0.777 30 H 0.094 0.906 31 H 0.101 0.899 32 H 0.127 0.873 33 H 0.043 0.957 34 H 0.071 0.929 35 H 0.091 0.909 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -18.488 -3.514 -2.263 18.954 hybrid contribution 0.603 1.951 0.662 2.147 sum -17.885 -1.563 -1.601 18.024 Atomic orbital electron populations 1.20244 0.83717 1.04358 1.03881 1.21598 0.98586 0.87254 1.02613 1.23312 0.77752 1.02726 1.15058 1.43814 1.06145 1.07990 1.50767 1.20662 0.79951 1.01972 0.97458 1.23356 0.97157 0.98736 1.18890 1.16980 0.83509 0.85230 0.77473 1.90778 1.81056 1.20932 1.53124 1.48091 1.07820 1.07441 1.68097 1.22017 1.00155 0.82398 1.03253 1.18705 0.74089 0.96025 0.94784 0.96222 1.21936 1.02676 0.99719 0.95216 1.21554 0.93511 1.28465 1.14473 0.91863 1.25663 0.97993 0.95856 0.98507 1.70004 1.08350 1.38059 1.38910 0.85483 0.77814 0.78640 0.79255 1.19247 1.21301 1.19637 1.85370 0.83019 0.99617 1.79970 1.28292 1.02996 0.85595 1.10725 1.70494 0.97267 1.31042 1.22648 0.89573 0.90983 0.88127 0.76332 0.77671 0.90638 0.89947 0.87333 0.95674 0.92903 0.90940 0.92535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.87 10.41 71.23 0.74 -0.13 16 2 C 0.03 0.65 7.05 41.32 0.29 0.94 16 3 C -0.06 -1.24 11.92 82.62 0.99 -0.25 16 4 N -0.41 -10.86 3.14 -354.87 -1.12 -11.97 16 5 C 0.14 3.72 10.94 82.84 0.91 4.62 16 6 C -0.26 -8.13 6.14 23.36 0.14 -7.99 16 7 C 0.58 23.50 7.64 86.50 0.66 24.16 16 8 O -0.58 -27.65 16.10 -4.25 -0.07 -27.71 16 9 N -0.59 -23.84 2.75 -831.32 -2.29 -26.12 16 10 C 0.07 2.07 8.14 127.77 1.04 3.11 16 11 C 0.26 13.09 2.62 44.24 0.12 13.21 16 12 H 0.02 1.16 6.90 -2.39 -0.02 1.15 16 13 C -0.14 -6.21 8.96 71.98 0.64 -5.56 16 14 C -0.54 -28.13 8.37 25.60 0.21 -27.92 16 15 H 0.06 3.19 7.65 -2.91 -0.02 3.16 16 16 C 0.02 1.05 5.30 84.66 0.45 1.50 16 17 N -0.91 -50.71 11.32 21.45 0.24 -50.47 16 18 Si 0.96 41.67 29.54 68.60 2.03 43.70 16 19 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 20 H -0.29 -12.45 7.11 99.48 0.71 -11.75 16 21 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 22 S 0.27 7.13 18.13 -56.49 -1.02 6.11 16 23 C 0.09 2.55 8.92 179.61 1.60 4.15 16 24 N -0.49 -14.52 11.32 -184.70 -2.09 -16.61 16 25 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 26 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.10 0.81 8.14 -2.39 -0.02 0.80 16 28 H 0.22 2.66 8.06 -2.91 -0.02 2.64 16 29 H 0.21 4.92 7.98 -2.91 -0.02 4.89 16 30 H 0.08 2.15 7.82 -2.39 -0.02 2.14 16 31 H 0.08 2.14 4.48 -21.28 -0.10 2.04 16 32 H 0.11 3.19 6.45 -2.39 -0.02 3.18 16 33 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.05 2.13 6.67 -2.39 -0.02 2.11 16 35 H 0.07 3.68 6.07 -2.39 -0.01 3.66 16 36 H 0.27 13.99 8.31 -92.70 -0.77 13.22 16 Total: -1.00 -68.72 313.00 4.50 -64.22 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: 1.03 Total: 9.05 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: 7.80 Total: 9.83 kcal Atomic # 7 Polarization: -99.93 SS G_CDS: -5.25 Total: -105.18 kcal Atomic # 8 Polarization: -27.65 SS G_CDS: -0.07 Total: -27.71 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.70 kcal Atomic # 16 Polarization: 7.13 SS G_CDS: -1.02 Total: 6.11 kcal Total: -68.72 4.50 -64.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335767309.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.944 kcal (2) G-P(sol) polarization free energy of solvation -68.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds