Wall clock time and date at job start Tue Mar 31 2020 06:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 115.55997 * 2 1 4 4 C 1.52996 * 117.49671 * 214.31509 * 2 1 3 5 5 C 1.53001 * 60.00120 * 252.50823 * 4 2 1 6 6 H 1.08996 * 117.49593 * 252.48832 * 5 4 2 7 7 C 1.50700 * 117.49772 * 107.48878 * 5 4 2 8 8 O 1.21278 * 120.00037 * 291.39126 * 7 5 4 9 9 N 1.34782 * 119.99759 * 111.39410 * 7 5 4 10 10 C 1.39150 * 119.99822 * 174.84430 * 9 7 5 11 11 C 1.38613 * 120.21187 * 338.97168 * 10 9 7 12 12 C 1.38184 * 120.17520 * 180.23798 * 11 10 9 13 13 C 1.39011 * 120.59928 * 359.48475 * 12 11 10 14 14 Cl 1.73595 * 119.78834 * 180.24311 * 13 12 11 15 15 C 1.37550 * 120.41972 * 0.51404 * 13 12 11 16 16 C 1.40742 * 119.80832 * 359.74940 * 15 13 12 17 17 C 1.41067 * 120.28831 * 180.02562 * 16 15 13 18 18 H 1.08003 * 120.00044 * 148.16980 * 17 16 15 19 19 C 1.39953 * 120.00133 * 328.17169 * 17 16 15 20 20 N 1.30857 * 119.99946 * 345.06210 * 19 17 16 21 21 Si 1.86801 * 120.00113 * 165.05541 * 19 17 16 22 22 H 1.48496 * 109.46871 * 89.99865 * 21 19 17 23 23 H 1.48498 * 109.47466 * 210.00247 * 21 19 17 24 24 H 1.48504 * 109.47341 * 330.00238 * 21 19 17 25 25 H 1.09004 * 109.46824 * 274.30767 * 1 2 3 26 26 H 1.08995 * 109.47241 * 34.30215 * 1 2 3 27 27 H 1.09003 * 109.47086 * 154.31408 * 1 2 3 28 28 H 1.09004 * 109.46856 * 205.69184 * 3 2 1 29 29 H 1.08991 * 109.47449 * 325.69543 * 3 2 1 30 30 H 1.08997 * 109.46847 * 85.69530 * 3 2 1 31 31 H 1.08997 * 117.49990 * 145.01817 * 4 2 1 32 32 H 1.09007 * 117.50036 * 359.97438 * 4 2 1 33 33 H 0.96999 * 120.00170 * 354.83828 * 9 7 5 34 34 H 1.08003 * 119.91193 * 359.95566 * 11 10 9 35 35 H 1.07996 * 119.70390 * 179.74839 * 12 11 10 36 36 H 1.08000 * 120.09292 * 179.76792 * 15 13 12 37 37 H 0.97002 * 119.99618 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3803 0.0000 4 6 2.2364 -1.1209 -0.7651 5 6 2.2365 -1.1210 0.7649 6 1 3.1717 -0.8756 1.2681 7 6 1.3721 -2.1407 1.4607 8 8 0.1639 -2.0534 1.4010 9 7 1.9417 -3.1496 2.1494 10 6 1.1479 -4.0283 2.8802 11 6 -0.1288 -3.6553 3.2701 12 6 -0.9146 -4.5267 4.0000 13 6 -0.4417 -5.7882 4.3427 14 17 -1.4491 -6.8684 5.2547 15 6 0.8214 -6.1838 3.9685 16 6 1.6386 -5.3081 3.2295 17 6 2.9355 -5.7036 2.8400 18 1 3.3574 -5.3365 1.9160 19 6 3.6755 -6.5717 3.6508 20 7 3.3059 -6.7864 4.8876 21 14 5.1906 -7.4243 2.9675 22 1 6.3864 -6.5777 3.2097 23 1 5.3674 -8.7354 3.6419 24 1 5.0226 -7.6374 1.5074 25 1 -0.3633 0.0772 1.0248 26 1 -0.3633 0.8489 -0.5791 27 1 -0.3633 -0.9261 -0.4454 28 1 3.1824 1.3084 -0.4455 29 1 1.5812 2.0743 -0.5791 30 1 2.2773 1.7413 1.0248 31 1 3.1714 -0.8751 -1.2684 32 1 1.6111 -1.8587 -1.2681 33 1 2.9049 -3.2631 2.1356 34 1 -0.5088 -2.6792 3.0067 35 1 -1.9067 -4.2266 4.3033 36 1 1.1849 -7.1636 4.2408 37 1 3.8190 -7.3878 5.4497 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336282685.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:31 Heat of formation + Delta-G solvation = -8.139121 kcal Electronic energy + Delta-G solvation = -20898.084561 eV Core-core repulsion = 17666.307159 eV Total energy + Delta-G solvation = -3231.777402 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.14516 -38.15391 -36.63719 -35.42281 -33.78793 -33.60056 -29.88113 -29.64302 -28.18455 -27.36969 -25.53316 -23.93947 -21.75972 -20.82673 -19.64705 -18.86467 -17.53254 -16.77215 -16.29882 -15.35721 -14.83846 -14.68934 -14.29316 -14.04741 -13.61254 -13.29714 -13.18982 -12.92051 -12.46939 -12.41214 -12.17345 -11.95839 -11.74767 -11.66547 -11.52503 -11.26661 -11.14051 -10.93172 -10.56653 -10.43119 -10.29784 -10.09292 -9.75102 -9.64091 -9.32946 -9.18702 -8.66207 -7.58463 -7.03454 -6.75394 -4.54116 2.34363 2.69929 2.99500 3.01642 3.07291 3.14752 3.31752 3.69819 3.81448 3.96590 4.46556 4.70932 4.82276 4.94845 5.11613 5.37292 5.40733 5.59625 5.64309 5.72563 5.90852 5.99978 6.05615 6.12163 6.26641 6.28216 6.36373 6.64825 6.72877 6.80707 6.98912 7.01472 7.33456 7.46828 7.70047 7.75323 7.91522 8.23822 8.37669 8.61973 8.68764 8.91617 10.05893 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.012877 B = 0.005397 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2173.932601 B = 5186.933380 C = 7137.943386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.096 4.096 3 C -0.115 4.115 4 C -0.149 4.149 5 C -0.184 4.184 6 H 0.120 0.880 7 C 0.526 3.474 8 O -0.532 6.532 9 N -0.633 5.633 10 C 0.031 3.969 11 C -0.095 4.095 12 C -0.211 4.211 13 C -0.017 4.017 14 Cl -0.125 7.125 15 C -0.137 4.137 16 C 0.109 3.891 17 C -0.472 4.472 18 H 0.080 0.920 19 C 0.079 3.921 20 N -0.789 5.789 21 Si 0.908 3.092 22 H -0.269 1.269 23 H -0.275 1.275 24 H -0.261 1.261 25 H 0.068 0.932 26 H 0.044 0.956 27 H 0.065 0.935 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.407 0.593 34 H 0.134 0.866 35 H 0.102 0.898 36 H 0.126 0.874 37 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.711 8.499 -6.369 10.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.097 4.097 3 C -0.172 4.172 4 C -0.187 4.187 5 C -0.205 4.205 6 H 0.138 0.862 7 C 0.314 3.686 8 O -0.411 6.411 9 N -0.273 5.273 10 C -0.063 4.063 11 C -0.115 4.115 12 C -0.231 4.231 13 C -0.044 4.044 14 Cl -0.097 7.097 15 C -0.157 4.157 16 C 0.105 3.895 17 C -0.502 4.502 18 H 0.098 0.902 19 C -0.140 4.140 20 N -0.414 5.414 21 Si 0.732 3.268 22 H -0.194 1.194 23 H -0.200 1.200 24 H -0.184 1.184 25 H 0.087 0.913 26 H 0.063 0.937 27 H 0.084 0.916 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.118 0.882 32 H 0.117 0.883 33 H 0.243 0.757 34 H 0.152 0.848 35 H 0.121 0.879 36 H 0.143 0.857 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.875 8.367 -6.110 10.397 hybrid contribution 1.318 -0.788 0.065 1.537 sum 2.192 7.579 -6.045 9.940 Atomic orbital electron populations 1.21342 0.90685 1.01188 1.02625 1.21546 0.96003 0.90339 1.01778 1.21384 0.99792 0.93987 1.02063 1.23197 1.02604 1.01540 0.91314 1.22366 1.01868 1.00667 0.95592 0.86237 1.19603 0.88132 0.81890 0.79024 1.90579 1.14375 1.74844 1.61327 1.42945 1.10755 1.27364 1.46257 1.17904 0.93534 0.90407 1.04478 1.20931 0.93254 0.99794 0.97510 1.20210 1.00564 0.94000 1.08350 1.20762 0.92463 0.91378 0.99785 1.98253 1.70467 1.66298 1.74646 1.20911 0.90517 1.00608 1.03698 1.17187 0.93150 0.87616 0.91562 1.19235 0.98857 1.25622 1.06446 0.90227 1.25853 0.99237 0.94893 0.93992 1.69795 1.37590 1.28451 1.05559 0.86314 0.80856 0.79208 0.80435 1.19440 1.19980 1.18448 0.91329 0.93731 0.91559 0.92446 0.91852 0.92062 0.88166 0.88291 0.75728 0.84836 0.87939 0.85660 0.90519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.36 8.09 37.16 0.30 -1.06 16 2 C -0.10 -1.17 2.70 -154.51 -0.42 -1.58 16 3 C -0.12 -1.09 9.85 37.16 0.37 -0.72 16 4 C -0.15 -1.75 9.52 -26.73 -0.25 -2.01 16 5 C -0.18 -2.50 5.91 -91.77 -0.54 -3.04 16 6 H 0.12 1.40 8.14 -51.93 -0.42 0.98 16 7 C 0.53 9.48 7.43 -10.98 -0.08 9.40 16 8 O -0.53 -10.83 10.05 5.56 0.06 -10.77 16 9 N -0.63 -12.39 5.16 -9.48 -0.05 -12.43 16 10 C 0.03 0.73 6.51 -83.18 -0.54 0.18 16 11 C -0.09 -2.19 8.75 -39.46 -0.35 -2.53 16 12 C -0.21 -4.82 9.82 -39.31 -0.39 -5.21 16 13 C -0.02 -0.40 6.31 -39.55 -0.25 -0.65 16 14 Cl -0.12 -2.59 28.94 -51.86 -1.50 -4.09 16 15 C -0.14 -3.43 8.41 -38.89 -0.33 -3.76 16 16 C 0.11 2.71 5.50 -106.66 -0.59 2.12 16 17 C -0.47 -11.29 8.23 -37.87 -0.31 -11.60 16 18 H 0.08 1.79 7.29 -52.48 -0.38 1.40 16 19 C 0.08 1.84 5.15 -17.32 -0.09 1.75 16 20 N -0.79 -19.29 11.30 55.55 0.63 -18.67 16 21 Si 0.91 17.41 29.59 -169.99 -5.03 12.38 16 22 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 23 H -0.27 -5.27 7.11 56.52 0.40 -4.86 16 24 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 25 H 0.07 1.04 7.26 -51.93 -0.38 0.66 16 26 H 0.04 0.50 7.92 -51.93 -0.41 0.09 16 27 H 0.07 1.00 7.01 -51.93 -0.36 0.64 16 28 H 0.06 0.47 7.90 -51.93 -0.41 0.06 16 29 H 0.06 0.53 7.92 -51.93 -0.41 0.12 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.10 0.95 8.05 -51.93 -0.42 0.53 16 32 H 0.10 1.26 8.05 -51.92 -0.42 0.85 16 33 H 0.41 7.25 7.50 -40.82 -0.31 6.95 16 34 H 0.13 3.04 5.49 -52.48 -0.29 2.75 16 35 H 0.10 2.15 8.06 -52.49 -0.42 1.73 16 36 H 0.13 3.26 6.62 -52.49 -0.35 2.91 16 37 H 0.28 6.37 8.30 -40.82 -0.34 6.03 16 LS Contribution 322.18 15.07 4.86 4.86 Total: -1.00 -26.66 322.18 -9.04 -35.70 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: -4.54 Total: 11.73 kcal Atomic # 6 Polarization: -15.24 SS G_CDS: -3.47 Total: -18.71 kcal Atomic # 7 Polarization: -31.68 SS G_CDS: 0.58 Total: -31.10 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.06 Total: -10.77 kcal Atomic # 14 Polarization: 17.41 SS G_CDS: -5.03 Total: 12.38 kcal Atomic # 17 Polarization: -2.59 SS G_CDS: -1.50 Total: -4.09 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -26.66 -9.04 -35.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336282685.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.561 kcal (2) G-P(sol) polarization free energy of solvation -26.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds