Wall clock time and date at job start Tue Mar 31 2020 06:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 115.55997 * 2 1 4 4 C 1.52996 * 117.49671 * 214.31509 * 2 1 3 5 5 C 1.53001 * 60.00120 * 252.50823 * 4 2 1 6 6 H 1.08996 * 117.49593 * 252.48832 * 5 4 2 7 7 C 1.50700 * 117.49772 * 107.48878 * 5 4 2 8 8 O 1.21278 * 120.00037 * 291.39126 * 7 5 4 9 9 N 1.34782 * 119.99759 * 111.39410 * 7 5 4 10 10 C 1.39150 * 119.99822 * 174.84430 * 9 7 5 11 11 C 1.38613 * 120.21187 * 338.97168 * 10 9 7 12 12 C 1.38184 * 120.17520 * 180.23798 * 11 10 9 13 13 C 1.39011 * 120.59928 * 359.48475 * 12 11 10 14 14 Cl 1.73595 * 119.78834 * 180.24311 * 13 12 11 15 15 C 1.37550 * 120.41972 * 0.51404 * 13 12 11 16 16 C 1.40742 * 119.80832 * 359.74940 * 15 13 12 17 17 C 1.41067 * 120.28831 * 180.02562 * 16 15 13 18 18 H 1.08003 * 120.00044 * 148.16980 * 17 16 15 19 19 C 1.39953 * 120.00133 * 328.17169 * 17 16 15 20 20 N 1.30857 * 119.99946 * 345.06210 * 19 17 16 21 21 Si 1.86801 * 120.00113 * 165.05541 * 19 17 16 22 22 H 1.48496 * 109.46871 * 89.99865 * 21 19 17 23 23 H 1.48498 * 109.47466 * 210.00247 * 21 19 17 24 24 H 1.48504 * 109.47341 * 330.00238 * 21 19 17 25 25 H 1.09004 * 109.46824 * 274.30767 * 1 2 3 26 26 H 1.08995 * 109.47241 * 34.30215 * 1 2 3 27 27 H 1.09003 * 109.47086 * 154.31408 * 1 2 3 28 28 H 1.09004 * 109.46856 * 205.69184 * 3 2 1 29 29 H 1.08991 * 109.47449 * 325.69543 * 3 2 1 30 30 H 1.08997 * 109.46847 * 85.69530 * 3 2 1 31 31 H 1.08997 * 117.49990 * 145.01817 * 4 2 1 32 32 H 1.09007 * 117.50036 * 359.97438 * 4 2 1 33 33 H 0.96999 * 120.00170 * 354.83828 * 9 7 5 34 34 H 1.08003 * 119.91193 * 359.95566 * 11 10 9 35 35 H 1.07996 * 119.70390 * 179.74839 * 12 11 10 36 36 H 1.08000 * 120.09292 * 179.76792 * 15 13 12 37 37 H 0.97002 * 119.99618 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3803 0.0000 4 6 2.2364 -1.1209 -0.7651 5 6 2.2365 -1.1210 0.7649 6 1 3.1717 -0.8756 1.2681 7 6 1.3721 -2.1407 1.4607 8 8 0.1639 -2.0534 1.4010 9 7 1.9417 -3.1496 2.1494 10 6 1.1479 -4.0283 2.8802 11 6 -0.1288 -3.6553 3.2701 12 6 -0.9146 -4.5267 4.0000 13 6 -0.4417 -5.7882 4.3427 14 17 -1.4491 -6.8684 5.2547 15 6 0.8214 -6.1838 3.9685 16 6 1.6386 -5.3081 3.2295 17 6 2.9355 -5.7036 2.8400 18 1 3.3574 -5.3365 1.9160 19 6 3.6755 -6.5717 3.6508 20 7 3.3059 -6.7864 4.8876 21 14 5.1906 -7.4243 2.9675 22 1 6.3864 -6.5777 3.2097 23 1 5.3674 -8.7354 3.6419 24 1 5.0226 -7.6374 1.5074 25 1 -0.3633 0.0772 1.0248 26 1 -0.3633 0.8489 -0.5791 27 1 -0.3633 -0.9261 -0.4454 28 1 3.1824 1.3084 -0.4455 29 1 1.5812 2.0743 -0.5791 30 1 2.2773 1.7413 1.0248 31 1 3.1714 -0.8751 -1.2684 32 1 1.6111 -1.8587 -1.2681 33 1 2.9049 -3.2631 2.1356 34 1 -0.5088 -2.6792 3.0067 35 1 -1.9067 -4.2266 4.3033 36 1 1.1849 -7.1636 4.2408 37 1 3.8190 -7.3878 5.4497 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336282685.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:31 Heat of formation + Delta-G solvation = -20.590808 kcal Electronic energy + Delta-G solvation = -20898.624507 eV Core-core repulsion = 17666.307159 eV Total energy + Delta-G solvation = -3232.317348 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.56317 -39.66411 -38.04281 -37.13897 -35.51445 -35.28300 -31.68228 -30.87888 -29.68531 -28.28740 -27.30483 -25.26618 -23.48031 -22.41369 -21.07811 -20.03456 -19.30315 -18.23541 -17.88908 -17.04750 -16.36164 -16.10694 -15.78761 -15.21489 -14.98386 -14.67789 -14.50546 -14.45542 -14.08299 -13.79374 -13.45062 -13.40242 -13.26920 -12.88402 -12.83523 -12.67746 -12.54474 -12.26924 -12.19513 -12.02821 -11.97311 -11.43238 -11.12048 -11.05153 -10.90703 -10.66218 -10.18507 -9.44865 -8.80249 -8.51272 -6.37939 0.61720 0.91257 1.42491 1.48110 1.52710 1.56264 1.69974 2.20720 2.34903 2.68543 2.85432 3.55384 3.68677 3.79187 3.90360 4.18851 4.23610 4.49081 4.53216 4.71539 4.86485 4.87003 4.92699 4.98553 5.04847 5.10648 5.13426 5.15254 5.21500 5.23667 5.36669 5.53254 5.58573 5.67338 5.86543 5.95225 6.12266 6.45559 6.71646 6.82467 6.93821 7.40126 8.32775 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.012877 B = 0.005397 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2173.932601 B = 5186.933380 C = 7137.943386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.094 4.094 3 C -0.111 4.111 4 C -0.135 4.135 5 C -0.195 4.195 6 H 0.144 0.856 7 C 0.522 3.478 8 O -0.559 6.559 9 N -0.635 5.635 10 C 0.030 3.970 11 C -0.106 4.106 12 C -0.214 4.214 13 C -0.026 4.026 14 Cl -0.103 7.103 15 C -0.158 4.158 16 C 0.084 3.916 17 C -0.489 4.489 18 H 0.089 0.911 19 C 0.041 3.959 20 N -0.823 5.823 21 Si 0.980 3.020 22 H -0.258 1.258 23 H -0.275 1.275 24 H -0.258 1.258 25 H 0.045 0.955 26 H 0.068 0.932 27 H 0.041 0.959 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.061 0.939 31 H 0.134 0.866 32 H 0.084 0.916 33 H 0.414 0.586 34 H 0.136 0.864 35 H 0.119 0.881 36 H 0.109 0.891 37 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.397 9.730 -7.722 12.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.094 4.094 3 C -0.168 4.168 4 C -0.172 4.172 5 C -0.216 4.216 6 H 0.161 0.839 7 C 0.312 3.688 8 O -0.439 6.439 9 N -0.276 5.276 10 C -0.066 4.066 11 C -0.127 4.127 12 C -0.235 4.235 13 C -0.053 4.053 14 Cl -0.075 7.075 15 C -0.179 4.179 16 C 0.079 3.921 17 C -0.519 4.519 18 H 0.107 0.893 19 C -0.175 4.175 20 N -0.448 5.448 21 Si 0.801 3.199 22 H -0.182 1.182 23 H -0.199 1.199 24 H -0.182 1.182 25 H 0.064 0.936 26 H 0.087 0.913 27 H 0.060 0.940 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.080 0.920 31 H 0.152 0.848 32 H 0.102 0.898 33 H 0.251 0.749 34 H 0.153 0.847 35 H 0.137 0.863 36 H 0.127 0.873 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.562 9.622 -7.471 12.449 hybrid contribution 0.678 -1.135 0.489 1.409 sum 3.240 8.487 -6.983 11.458 Atomic orbital electron populations 1.21272 0.92162 1.00943 1.01295 1.21706 0.95088 0.91779 1.00839 1.21402 1.00733 0.92035 1.02596 1.23313 1.03632 1.00586 0.89655 1.22384 1.02286 1.00282 0.96685 0.83873 1.20453 0.88405 0.81764 0.78195 1.90563 1.15952 1.75357 1.62048 1.43016 1.10877 1.27369 1.46349 1.18059 0.93867 0.90580 1.04064 1.21079 0.93600 1.00056 0.97950 1.20439 1.01273 0.93762 1.07991 1.20840 0.92478 0.92056 0.99959 1.98244 1.69627 1.65594 1.74029 1.20865 0.91474 1.00272 1.05280 1.17516 0.93955 0.88366 0.92227 1.19495 0.98831 1.26548 1.06985 0.89271 1.26682 1.02038 0.94883 0.93868 1.69866 1.39094 1.29066 1.06816 0.85224 0.77257 0.77941 0.79501 1.18232 1.19943 1.18224 0.93622 0.91349 0.93973 0.90504 0.90641 0.92027 0.84831 0.89765 0.74851 0.84701 0.86265 0.87294 0.90019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.61 8.09 71.98 0.58 -2.02 16 2 C -0.09 -2.05 2.70 -52.18 -0.14 -2.20 16 3 C -0.11 -1.69 9.85 71.98 0.71 -0.98 16 4 C -0.13 -2.81 9.52 30.59 0.29 -2.52 16 5 C -0.20 -4.94 5.91 -11.54 -0.07 -5.01 16 6 H 0.14 2.94 8.14 -2.39 -0.02 2.92 16 7 C 0.52 18.73 7.43 87.66 0.65 19.38 16 8 O -0.56 -23.14 10.05 -3.02 -0.03 -23.17 16 9 N -0.63 -24.93 5.16 -302.30 -1.56 -26.49 16 10 C 0.03 1.41 6.51 38.86 0.25 1.67 16 11 C -0.11 -5.02 8.75 22.35 0.20 -4.83 16 12 C -0.21 -9.93 9.82 22.44 0.22 -9.71 16 13 C -0.03 -1.26 6.31 22.29 0.14 -1.12 16 14 Cl -0.10 -4.29 28.94 -2.72 -0.08 -4.36 16 15 C -0.16 -8.16 8.41 22.72 0.19 -7.97 16 16 C 0.08 4.25 5.50 -21.18 -0.12 4.14 16 17 C -0.49 -23.61 8.23 23.38 0.19 -23.41 16 18 H 0.09 3.98 7.29 -2.91 -0.02 3.96 16 19 C 0.04 1.92 5.15 85.25 0.44 2.36 16 20 N -0.82 -40.81 11.30 21.83 0.25 -40.56 16 21 Si 0.98 35.19 29.59 68.60 2.03 37.22 16 22 H -0.26 -8.75 7.11 99.48 0.71 -8.04 16 23 H -0.27 -9.77 7.11 99.48 0.71 -9.06 16 24 H -0.26 -9.12 7.11 99.48 0.71 -8.41 16 25 H 0.04 1.39 7.26 -2.38 -0.02 1.37 16 26 H 0.07 1.42 7.92 -2.39 -0.02 1.40 16 27 H 0.04 1.28 7.01 -2.39 -0.02 1.26 16 28 H 0.08 0.90 7.90 -2.38 -0.02 0.88 16 29 H 0.07 0.99 7.92 -2.39 -0.02 0.97 16 30 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.13 1.93 8.05 -2.39 -0.02 1.91 16 32 H 0.08 2.03 8.05 -2.38 -0.02 2.01 16 33 H 0.41 14.65 7.50 -92.71 -0.70 13.95 16 34 H 0.14 6.29 5.49 -2.91 -0.02 6.27 16 35 H 0.12 4.99 8.06 -2.91 -0.02 4.97 16 36 H 0.11 5.89 6.62 -2.91 -0.02 5.87 16 37 H 0.29 13.11 8.30 -92.71 -0.77 12.34 16 Total: -1.00 -58.63 322.18 4.55 -54.08 By element: Atomic # 1 Polarization: 35.11 SS G_CDS: 0.41 Total: 35.52 kcal Atomic # 6 Polarization: -35.77 SS G_CDS: 3.54 Total: -32.23 kcal Atomic # 7 Polarization: -65.73 SS G_CDS: -1.31 Total: -67.05 kcal Atomic # 8 Polarization: -23.14 SS G_CDS: -0.03 Total: -23.17 kcal Atomic # 14 Polarization: 35.19 SS G_CDS: 2.03 Total: 37.22 kcal Atomic # 17 Polarization: -4.29 SS G_CDS: -0.08 Total: -4.36 kcal Total: -58.63 4.55 -54.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336282685.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.489 kcal (2) G-P(sol) polarization free energy of solvation -58.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds