Wall clock time and date at job start Tue Mar 31 2020 06:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30700 * 1 3 3 Si 1.86797 * 120.00235 * 2 1 4 4 H 1.48502 * 109.47215 * 269.99772 * 3 2 1 5 5 H 1.48497 * 109.47155 * 29.99409 * 3 2 1 6 6 H 1.48493 * 109.47360 * 149.99621 * 3 2 1 7 7 C 1.40153 * 119.99787 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00071 * 197.91282 * 7 2 1 9 9 C 1.40966 * 120.00275 * 17.91972 * 7 2 1 10 10 C 1.40963 * 120.10186 * 204.69635 * 9 7 2 11 11 C 1.36206 * 119.89944 * 180.02562 * 10 9 7 12 12 C 1.40128 * 120.10183 * 359.97438 * 11 10 9 13 13 C 1.47449 * 119.90231 * 179.97438 * 12 11 10 14 14 N 1.32149 * 126.58796 * 180.31535 * 13 12 11 15 15 C 1.34809 * 105.51194 * 180.09381 * 14 13 12 16 16 C 1.48506 * 126.29048 * 179.88216 * 15 14 13 17 17 C 1.39244 * 119.71634 * 179.73482 * 16 15 14 18 18 C 1.38471 * 119.07229 * 179.97438 * 17 16 15 19 19 C 1.38721 * 118.49620 * 359.97438 * 18 17 16 20 20 C 1.38320 * 119.35117 * 359.97438 * 19 18 17 21 21 N 1.31704 * 120.88737 * 0.02562 * 20 19 18 22 22 N 1.30874 * 107.41222 * 359.61716 * 15 14 13 23 23 O 1.21274 * 110.37417 * 0.24392 * 22 15 14 24 24 C 1.40124 * 120.19905 * 0.25862 * 12 11 10 25 25 C 1.36214 * 120.10420 * 359.48203 * 24 12 11 26 26 H 0.97002 * 119.99676 * 0.02562 * 1 2 3 27 27 H 1.08001 * 120.04866 * 359.97438 * 10 9 7 28 28 H 1.07998 * 119.95169 * 180.02562 * 11 10 9 29 29 H 1.08006 * 120.46046 * 359.97438 * 17 16 15 30 30 H 1.08000 * 120.74664 * 180.02562 * 18 17 16 31 31 H 1.08007 * 120.32560 * 179.97438 * 19 18 17 32 32 H 1.08000 * 119.55681 * 179.97438 * 20 19 18 33 33 H 1.07998 * 119.95260 * 179.71730 * 24 12 11 34 34 H 1.08002 * 120.05277 * 180.25478 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2411 1.6177 0.0000 4 1 2.4886 2.0463 -1.4001 5 1 1.4385 2.6527 0.6999 6 1 3.5385 1.4401 0.7001 7 6 2.0077 -1.2138 0.0005 8 1 3.0484 -1.2364 0.2882 9 6 1.3542 -2.4051 -0.3745 10 6 1.8269 -3.6482 0.0929 11 6 1.1926 -4.7968 -0.2725 12 6 0.0714 -4.7441 -1.1114 13 6 -0.6115 -5.9903 -1.5047 14 7 -1.6696 -6.0948 -2.2894 15 6 -1.9368 -7.4142 -2.3607 16 6 -3.0413 -8.0473 -3.1253 17 6 -3.1882 -9.4319 -3.1073 18 6 -4.2230 -10.0081 -3.8246 19 6 -5.0773 -9.1786 -4.5362 20 6 -4.8730 -7.8108 -4.5086 21 7 -3.8804 -7.2892 -3.8178 22 7 -1.0405 -8.0350 -1.6368 23 8 -0.2739 -7.2378 -1.1391 24 6 -0.3991 -3.5112 -1.5824 25 6 0.2257 -2.3570 -1.2179 26 1 -0.4850 0.8401 -0.0004 27 1 2.6913 -3.6897 0.7392 28 1 1.5538 -5.7495 0.0855 29 1 -2.5045 -10.0477 -2.5417 30 1 -4.3623 -11.0791 -3.8292 31 1 -5.8940 -9.5966 -5.1062 32 1 -5.5359 -7.1619 -5.0618 33 1 -1.2609 -3.4756 -2.2324 34 1 -0.1402 -1.4068 -1.5782 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340193716.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:44 Heat of formation + Delta-G solvation = 119.234509 kcal Electronic energy + Delta-G solvation = -20954.828413 eV Core-core repulsion = 17627.466852 eV Total energy + Delta-G solvation = -3327.361561 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.090 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.68475 -40.15692 -37.81501 -35.20732 -34.29264 -32.64308 -32.60306 -30.90752 -29.84016 -29.43539 -26.04178 -24.98467 -23.83691 -22.76623 -22.10214 -20.73584 -20.38262 -17.76906 -17.63291 -17.37849 -16.65727 -16.16386 -15.69925 -15.53788 -15.03533 -14.15647 -14.13508 -13.94056 -13.54945 -13.28034 -12.87048 -12.30808 -12.18096 -12.10562 -11.81536 -11.64680 -11.36734 -11.33111 -11.14135 -10.84891 -10.33462 -10.12794 -10.04435 -9.94216 -9.63665 -9.56835 -9.39061 -8.89842 -7.83064 -7.55521 -7.16392 -4.71453 0.59718 1.10892 1.50892 2.49861 2.82571 2.89585 2.92708 2.95584 3.30366 3.49928 3.63875 3.65672 3.85128 4.24872 4.34586 4.64232 4.77022 4.86438 5.04835 5.18294 5.41716 5.53646 5.69894 5.84431 5.96973 6.07041 6.17314 6.35078 6.48936 6.62684 6.68270 6.75803 6.90494 7.02970 7.32693 7.52751 7.71638 7.79259 7.84123 7.91703 8.27432 8.47614 8.60026 8.81293 9.73619 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.033584 B = 0.002948 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.541549 B = 9496.488262 C =10252.845375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.758 5.758 2 C 0.071 3.929 3 Si 0.918 3.082 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.258 1.258 7 C -0.425 4.425 8 H 0.089 0.911 9 C 0.128 3.872 10 C -0.229 4.229 11 C -0.036 4.036 12 C -0.199 4.199 13 C 0.279 3.721 14 N -0.493 5.493 15 C 0.209 3.791 16 C 0.213 3.787 17 C -0.140 4.140 18 C -0.077 4.077 19 C -0.168 4.168 20 C 0.103 3.897 21 N -0.446 5.446 22 N -0.400 5.400 23 O 0.058 5.942 24 C -0.032 4.032 25 C -0.179 4.179 26 H 0.291 0.709 27 H 0.103 0.897 28 H 0.101 0.899 29 H 0.143 0.857 30 H 0.140 0.860 31 H 0.138 0.862 32 H 0.162 0.838 33 H 0.106 0.894 34 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.599 -9.968 -5.152 12.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.380 5.380 2 C -0.153 4.153 3 Si 0.741 3.259 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.181 1.181 7 C -0.452 4.452 8 H 0.108 0.892 9 C 0.124 3.876 10 C -0.249 4.249 11 C -0.056 4.056 12 C -0.204 4.204 13 C 0.071 3.929 14 N -0.227 5.227 15 C -0.062 4.062 16 C 0.075 3.925 17 C -0.162 4.162 18 C -0.103 4.103 19 C -0.189 4.189 20 C -0.056 4.056 21 N -0.156 5.156 22 N -0.116 5.116 23 O 0.001 5.999 24 C -0.052 4.052 25 C -0.198 4.198 26 H 0.102 0.898 27 H 0.122 0.878 28 H 0.119 0.881 29 H 0.160 0.840 30 H 0.158 0.842 31 H 0.156 0.844 32 H 0.179 0.821 33 H 0.124 0.876 34 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -6.009 -9.618 -5.293 12.515 hybrid contribution 0.169 -0.128 0.113 0.240 sum -5.840 -9.745 -5.180 12.486 Atomic orbital electron populations 1.69765 1.08003 1.30602 1.29622 1.26190 0.94895 1.02234 0.91950 0.86134 0.80523 0.79432 0.79848 1.18733 1.19851 1.18128 1.19949 0.98542 0.91165 1.35561 0.89250 1.17863 0.90422 0.92242 0.87094 1.20656 1.04452 0.92320 1.07470 1.20374 0.93178 0.97588 0.94466 1.16648 1.03339 0.85395 1.15048 1.26810 0.89662 0.87220 0.89251 1.72398 1.14789 1.14530 1.20976 1.23191 0.96537 0.87632 0.98842 1.17990 0.91390 0.88931 0.94165 1.22054 0.99317 0.94645 1.00171 1.21522 0.93403 1.00706 0.94635 1.22290 1.00748 0.95183 1.00686 1.22840 0.94158 0.93237 0.95366 1.67548 1.02663 1.40041 1.05365 1.74684 1.05329 1.16280 1.15293 1.85295 1.43823 1.15231 1.55543 1.20443 0.97393 0.90823 0.96558 1.20983 0.99896 0.96928 1.02026 0.89785 0.87840 0.88053 0.83957 0.84217 0.84377 0.82057 0.87597 0.85765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -17.54 10.95 55.56 0.61 -16.93 16 2 C 0.07 1.57 5.13 -17.31 -0.09 1.48 16 3 Si 0.92 16.44 29.60 -169.99 -5.03 11.41 16 4 H -0.26 -4.70 7.11 56.52 0.40 -4.29 16 5 H -0.27 -4.83 7.11 56.52 0.40 -4.42 16 6 H -0.26 -4.56 7.11 56.52 0.40 -4.15 16 7 C -0.43 -9.95 9.03 -37.83 -0.34 -10.29 16 8 H 0.09 1.97 7.91 -52.49 -0.42 1.55 16 9 C 0.13 3.09 5.57 -106.80 -0.60 2.49 16 10 C -0.23 -5.10 9.73 -39.28 -0.38 -5.48 16 11 C -0.04 -0.77 9.66 -39.60 -0.38 -1.15 16 12 C -0.20 -4.49 5.89 -104.73 -0.62 -5.11 16 13 C 0.28 6.14 7.98 -13.89 -0.11 6.03 16 14 N -0.49 -11.07 11.23 -10.23 -0.11 -11.19 16 15 C 0.21 4.25 7.89 -156.36 -1.23 3.01 16 16 C 0.21 3.65 6.76 -82.93 -0.56 3.09 16 17 C -0.14 -1.85 9.73 -39.12 -0.38 -2.23 16 18 C -0.08 -0.75 10.17 -39.32 -0.40 -1.15 16 19 C -0.17 -1.54 10.11 -39.37 -0.40 -1.94 16 20 C 0.10 1.21 11.18 -17.58 -0.20 1.02 16 21 N -0.45 -7.45 10.29 -9.76 -0.10 -7.55 16 22 N -0.40 -7.96 11.81 31.25 0.37 -7.60 16 23 O 0.06 1.20 11.09 16.37 0.18 1.38 16 24 C -0.03 -0.75 9.63 -39.60 -0.38 -1.13 16 25 C -0.18 -4.33 8.63 -39.28 -0.34 -4.67 16 26 H 0.29 6.04 8.29 -40.82 -0.34 5.70 16 27 H 0.10 2.09 8.06 -52.49 -0.42 1.67 16 28 H 0.10 1.90 7.92 -52.49 -0.42 1.48 16 29 H 0.14 1.75 7.86 -52.48 -0.41 1.34 16 30 H 0.14 0.88 8.06 -52.49 -0.42 0.45 16 31 H 0.14 0.77 8.06 -52.48 -0.42 0.34 16 32 H 0.16 1.39 8.06 -52.49 -0.42 0.97 16 33 H 0.11 2.42 7.85 -52.49 -0.41 2.01 16 34 H 0.12 3.06 6.16 -52.49 -0.32 2.74 16 LS Contribution 311.61 15.07 4.70 4.70 Total: -1.00 -27.81 311.61 -8.60 -36.41 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -2.80 Total: 5.39 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: -6.41 Total: -16.03 kcal Atomic # 7 Polarization: -44.03 SS G_CDS: 0.76 Total: -43.26 kcal Atomic # 8 Polarization: 1.20 SS G_CDS: 0.18 Total: 1.38 kcal Atomic # 14 Polarization: 16.44 SS G_CDS: -5.03 Total: 11.41 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -27.81 -8.60 -36.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340193716.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.648 kcal (2) G-P(sol) polarization free energy of solvation -27.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds