Wall clock time and date at job start Tue Mar 31 2020 06:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30700 * 1 3 3 Si 1.86797 * 120.00235 * 2 1 4 4 H 1.48502 * 109.47215 * 269.99772 * 3 2 1 5 5 H 1.48497 * 109.47155 * 29.99409 * 3 2 1 6 6 H 1.48493 * 109.47360 * 149.99621 * 3 2 1 7 7 C 1.40153 * 119.99787 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00071 * 197.91282 * 7 2 1 9 9 C 1.40966 * 120.00275 * 17.91972 * 7 2 1 10 10 C 1.40963 * 120.10186 * 204.69635 * 9 7 2 11 11 C 1.36206 * 119.89944 * 180.02562 * 10 9 7 12 12 C 1.40128 * 120.10183 * 359.97438 * 11 10 9 13 13 C 1.47449 * 119.90231 * 179.97438 * 12 11 10 14 14 N 1.32149 * 126.58796 * 180.31535 * 13 12 11 15 15 C 1.34809 * 105.51194 * 180.09381 * 14 13 12 16 16 C 1.48506 * 126.29048 * 179.88216 * 15 14 13 17 17 C 1.39244 * 119.71634 * 179.73482 * 16 15 14 18 18 C 1.38471 * 119.07229 * 179.97438 * 17 16 15 19 19 C 1.38721 * 118.49620 * 359.97438 * 18 17 16 20 20 C 1.38320 * 119.35117 * 359.97438 * 19 18 17 21 21 N 1.31704 * 120.88737 * 0.02562 * 20 19 18 22 22 N 1.30874 * 107.41222 * 359.61716 * 15 14 13 23 23 O 1.21274 * 110.37417 * 0.24392 * 22 15 14 24 24 C 1.40124 * 120.19905 * 0.25862 * 12 11 10 25 25 C 1.36214 * 120.10420 * 359.48203 * 24 12 11 26 26 H 0.97002 * 119.99676 * 0.02562 * 1 2 3 27 27 H 1.08001 * 120.04866 * 359.97438 * 10 9 7 28 28 H 1.07998 * 119.95169 * 180.02562 * 11 10 9 29 29 H 1.08006 * 120.46046 * 359.97438 * 17 16 15 30 30 H 1.08000 * 120.74664 * 180.02562 * 18 17 16 31 31 H 1.08007 * 120.32560 * 179.97438 * 19 18 17 32 32 H 1.08000 * 119.55681 * 179.97438 * 20 19 18 33 33 H 1.07998 * 119.95260 * 179.71730 * 24 12 11 34 34 H 1.08002 * 120.05277 * 180.25478 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2411 1.6177 0.0000 4 1 2.4886 2.0463 -1.4001 5 1 1.4385 2.6527 0.6999 6 1 3.5385 1.4401 0.7001 7 6 2.0077 -1.2138 0.0005 8 1 3.0484 -1.2364 0.2882 9 6 1.3542 -2.4051 -0.3745 10 6 1.8269 -3.6482 0.0929 11 6 1.1926 -4.7968 -0.2725 12 6 0.0714 -4.7441 -1.1114 13 6 -0.6115 -5.9903 -1.5047 14 7 -1.6696 -6.0948 -2.2894 15 6 -1.9368 -7.4142 -2.3607 16 6 -3.0413 -8.0473 -3.1253 17 6 -3.1882 -9.4319 -3.1073 18 6 -4.2230 -10.0081 -3.8246 19 6 -5.0773 -9.1786 -4.5362 20 6 -4.8730 -7.8108 -4.5086 21 7 -3.8804 -7.2892 -3.8178 22 7 -1.0405 -8.0350 -1.6368 23 8 -0.2739 -7.2378 -1.1391 24 6 -0.3991 -3.5112 -1.5824 25 6 0.2257 -2.3570 -1.2179 26 1 -0.4850 0.8401 -0.0004 27 1 2.6913 -3.6897 0.7392 28 1 1.5538 -5.7495 0.0855 29 1 -2.5045 -10.0477 -2.5417 30 1 -4.3623 -11.0791 -3.8292 31 1 -5.8940 -9.5966 -5.1062 32 1 -5.5359 -7.1619 -5.0618 33 1 -1.2609 -3.4756 -2.2324 34 1 -0.1402 -1.4068 -1.5782 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340193716.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:43 Heat of formation + Delta-G solvation = 103.151974 kcal Electronic energy + Delta-G solvation = -20955.525805 eV Core-core repulsion = 17627.466852 eV Total energy + Delta-G solvation = -3328.058952 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.090 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -46.28490 -41.12558 -39.58811 -36.77932 -35.98944 -34.12044 -33.57603 -32.18353 -31.61734 -31.06943 -27.77548 -26.24148 -25.07739 -24.07001 -23.61074 -22.47079 -21.92173 -19.40782 -19.16738 -18.99248 -17.73946 -17.40656 -17.12177 -16.80875 -16.48325 -15.79410 -15.36473 -15.20381 -14.93995 -14.52320 -14.08920 -14.03952 -13.85177 -13.59324 -13.36574 -12.99045 -12.86876 -12.82424 -12.71504 -12.38801 -11.96079 -11.73098 -11.60435 -11.38642 -11.06033 -10.96456 -10.55618 -10.02562 -9.63648 -9.32891 -8.85156 -6.51020 -0.54490 -0.10869 0.24408 0.98091 1.14147 1.39236 1.43220 1.56195 1.71338 1.88907 2.15113 2.30999 2.62515 2.81455 2.91829 3.60793 3.70982 3.90642 3.97055 4.04371 4.16349 4.35652 4.39114 4.45770 4.68156 4.75704 4.94067 4.95317 5.01587 5.07322 5.12269 5.13943 5.24775 5.54869 5.62647 5.75572 5.94128 5.98458 6.12649 6.48305 6.69140 6.80659 6.85831 7.19673 8.08386 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.033584 B = 0.002948 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.541549 B = 9496.488262 C =10252.845375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.033 3.967 3 Si 0.992 3.008 4 H -0.261 1.261 5 H -0.267 1.267 6 H -0.250 1.250 7 C -0.448 4.448 8 H 0.100 0.900 9 C 0.102 3.898 10 C -0.237 4.237 11 C -0.031 4.031 12 C -0.209 4.209 13 C 0.273 3.727 14 N -0.520 5.520 15 C 0.209 3.791 16 C 0.162 3.838 17 C -0.139 4.139 18 C -0.068 4.068 19 C -0.140 4.140 20 C 0.089 3.911 21 N -0.493 5.493 22 N -0.402 5.402 23 O 0.057 5.943 24 C -0.038 4.038 25 C -0.196 4.196 26 H 0.299 0.701 27 H 0.123 0.877 28 H 0.129 0.871 29 H 0.145 0.855 30 H 0.185 0.815 31 H 0.188 0.812 32 H 0.188 0.812 33 H 0.100 0.900 34 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.422 -11.472 -5.865 14.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.188 4.188 3 Si 0.811 3.189 4 H -0.185 1.185 5 H -0.191 1.191 6 H -0.173 1.173 7 C -0.474 4.474 8 H 0.118 0.882 9 C 0.098 3.902 10 C -0.256 4.256 11 C -0.051 4.051 12 C -0.215 4.215 13 C 0.064 3.936 14 N -0.254 5.254 15 C -0.062 4.062 16 C 0.026 3.974 17 C -0.161 4.161 18 C -0.093 4.093 19 C -0.160 4.160 20 C -0.070 4.070 21 N -0.204 5.204 22 N -0.118 5.118 23 O 0.002 5.998 24 C -0.058 4.058 25 C -0.215 4.215 26 H 0.111 0.889 27 H 0.141 0.859 28 H 0.147 0.853 29 H 0.163 0.837 30 H 0.202 0.798 31 H 0.205 0.795 32 H 0.205 0.795 33 H 0.118 0.882 34 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -6.816 -11.144 -5.988 14.370 hybrid contribution 0.221 0.182 0.223 0.363 sum -6.595 -10.961 -5.764 14.031 Atomic orbital electron populations 1.69807 1.09567 1.32071 1.29787 1.27084 0.95506 1.05374 0.90808 0.85035 0.79260 0.74793 0.79824 1.18543 1.19138 1.17309 1.20283 0.99151 0.91805 1.36160 0.88243 1.18201 0.90732 0.93628 0.87598 1.20893 1.05132 0.91894 1.07699 1.20622 0.92334 0.98620 0.93541 1.16769 1.03940 0.85320 1.15431 1.26710 0.89854 0.87518 0.89567 1.72384 1.15240 1.16262 1.21513 1.23909 0.97092 0.86870 0.98331 1.18051 0.92162 0.90459 0.96709 1.22201 1.00482 0.92929 1.00538 1.22063 0.91547 1.02934 0.92757 1.22828 1.00689 0.93742 0.98702 1.23449 0.93286 0.95417 0.94817 1.67397 1.04294 1.41821 1.06862 1.74628 1.05543 1.15843 1.15772 1.85270 1.44100 1.14727 1.55717 1.20442 0.97323 0.91310 0.96726 1.20929 1.00868 0.96594 1.03130 0.88915 0.85874 0.85314 0.83734 0.79797 0.79501 0.79502 0.88180 0.86973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -37.36 10.95 21.86 0.24 -37.12 16 2 C 0.03 1.46 5.13 85.33 0.44 1.90 16 3 Si 0.99 33.27 29.60 68.60 2.03 35.30 16 4 H -0.26 -8.63 7.11 99.48 0.71 -7.92 16 5 H -0.27 -8.60 7.11 99.48 0.71 -7.89 16 6 H -0.25 -8.02 7.11 99.48 0.71 -7.31 16 7 C -0.45 -21.20 9.03 23.40 0.21 -20.99 16 8 H 0.10 4.36 7.91 -2.91 -0.02 4.34 16 9 C 0.10 5.08 5.57 -21.27 -0.12 4.96 16 10 C -0.24 -10.61 9.73 22.46 0.22 -10.39 16 11 C -0.03 -1.35 9.66 22.26 0.21 -1.13 16 12 C -0.21 -9.78 5.89 -19.93 -0.12 -9.90 16 13 C 0.27 12.43 7.98 87.15 0.70 13.13 16 14 N -0.52 -24.33 11.23 -302.07 -3.39 -27.73 16 15 C 0.21 8.76 7.89 137.42 1.08 9.85 16 16 C 0.16 5.61 6.76 42.01 0.28 5.90 16 17 C -0.14 -3.47 9.73 22.57 0.22 -3.25 16 18 C -0.07 -1.04 10.17 22.44 0.23 -0.81 16 19 C -0.14 -1.92 10.11 22.40 0.23 -1.69 16 20 C 0.09 1.91 11.18 84.73 0.95 2.86 16 21 N -0.49 -16.47 10.29 -184.78 -1.90 -18.37 16 22 N -0.40 -16.31 11.81 -57.49 -0.68 -16.98 16 23 O 0.06 2.38 11.09 68.63 0.76 3.14 16 24 C -0.04 -1.87 9.63 22.26 0.21 -1.65 16 25 C -0.20 -9.94 8.63 22.47 0.19 -9.75 16 26 H 0.30 12.64 8.29 -92.71 -0.77 11.87 16 27 H 0.12 4.91 8.06 -2.91 -0.02 4.89 16 28 H 0.13 4.73 7.92 -2.91 -0.02 4.71 16 29 H 0.14 3.40 7.86 -2.91 -0.02 3.38 16 30 H 0.18 1.20 8.06 -2.91 -0.02 1.18 16 31 H 0.19 0.79 8.06 -2.91 -0.02 0.77 16 32 H 0.19 2.75 8.06 -2.91 -0.02 2.73 16 33 H 0.10 4.90 7.85 -2.91 -0.02 4.88 16 34 H 0.11 5.85 6.16 -2.91 -0.02 5.84 16 Total: -1.00 -64.43 311.61 3.15 -61.28 By element: Atomic # 1 Polarization: 20.30 SS G_CDS: 1.15 Total: 21.45 kcal Atomic # 6 Polarization: -25.91 SS G_CDS: 4.94 Total: -20.98 kcal Atomic # 7 Polarization: -94.46 SS G_CDS: -5.73 Total: -100.20 kcal Atomic # 8 Polarization: 2.38 SS G_CDS: 0.76 Total: 3.14 kcal Atomic # 14 Polarization: 33.27 SS G_CDS: 2.03 Total: 35.30 kcal Total: -64.43 3.15 -61.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340193716.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.433 kcal (2) G-P(sol) polarization free energy of solvation -64.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds