Wall clock time and date at job start Tue Mar 31 2020 06:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30323 * 119.39910 * 2 1 4 4 N 1.28195 * 123.68386 * 180.28568 * 3 2 1 5 5 C 1.46506 * 119.10433 * 179.73854 * 4 3 2 6 6 C 1.52999 * 109.46684 * 269.72711 * 5 4 3 7 7 C 1.53006 * 109.46623 * 179.97438 * 6 5 4 8 8 S 1.81003 * 109.46903 * 179.97438 * 7 6 5 9 9 C 1.76196 * 99.99846 * 180.02562 * 8 7 6 10 10 H 1.07998 * 120.00031 * 0.02562 * 9 8 7 11 11 C 1.38802 * 119.99637 * 180.02562 * 9 8 7 12 12 N 1.31633 * 119.99688 * 180.02562 * 11 9 8 13 13 Si 1.86796 * 120.00457 * 0.02562 * 11 9 8 14 14 H 1.48498 * 109.47357 * 89.99660 * 13 11 9 15 15 H 1.48500 * 109.47427 * 210.00233 * 13 11 9 16 16 H 1.48500 * 109.46916 * 330.00121 * 13 11 9 17 17 C 1.34820 * 121.79338 * 359.45314 * 4 3 2 18 18 O 1.21928 * 120.77289 * 180.23664 * 17 4 3 19 19 C 1.46833 * 118.45829 * 0.26379 * 17 4 3 20 20 C 1.43198 * 121.54532 * 180.02562 * 19 17 4 21 21 N 4.82150 * 136.18619 * 179.73362 * 2 1 3 22 22 C 1.39418 * 116.91529 * 359.97438 * 19 17 4 23 23 C 1.50702 * 121.02611 * 179.97438 * 22 19 17 24 24 H 1.09000 * 109.47569 * 270.24861 * 1 2 3 25 25 H 1.08998 * 109.46907 * 30.25429 * 1 2 3 26 26 H 1.09000 * 109.47095 * 150.24851 * 1 2 3 27 27 H 1.09000 * 109.47212 * 149.72478 * 5 4 3 28 28 H 1.09001 * 109.46577 * 29.72404 * 5 4 3 29 29 H 1.09000 * 109.47486 * 59.99935 * 6 5 4 30 30 H 1.09001 * 109.47362 * 299.99212 * 6 5 4 31 31 H 1.08993 * 109.46955 * 300.00075 * 7 6 5 32 32 H 1.09000 * 109.47050 * 59.99904 * 7 6 5 33 33 H 0.97002 * 120.00245 * 179.97438 * 12 11 9 34 34 H 1.08994 * 109.47424 * 0.02562 * 23 22 19 35 35 H 1.09001 * 109.46591 * 120.00729 * 23 22 19 36 36 H 1.09000 * 109.47261 * 240.00264 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1467 1.1354 0.0000 4 7 3.4251 1.2312 -0.0053 5 6 4.0400 2.5609 -0.0106 6 6 4.2545 3.0178 -1.4549 7 6 4.8962 4.4068 -1.4604 8 16 5.1506 4.9471 -3.1691 9 6 5.8799 6.5257 -2.8854 10 1 6.0385 6.8736 -1.8754 11 6 6.2505 7.3221 -3.9601 12 7 6.7958 8.5013 -3.7481 13 14 5.9756 6.7207 -5.7071 14 1 4.6321 7.1493 -6.1724 15 1 7.0149 7.2961 -6.5981 16 1 6.0610 5.2385 -5.7395 17 6 4.2190 0.1416 -0.0005 18 8 5.4331 0.2544 -0.0014 19 6 3.5878 -1.1841 0.0052 20 6 4.3675 -2.3852 0.0111 21 7 4.9861 -3.3380 0.0155 22 6 2.1940 -1.2195 0.0058 23 6 1.4503 -2.5302 0.0109 24 1 -0.3634 0.0045 1.0276 25 1 -0.3633 0.8877 -0.5178 26 1 -0.3633 -0.8922 -0.5100 27 1 5.0001 2.5193 0.5038 28 1 3.3845 3.2663 0.5001 29 1 3.2944 3.0595 -1.9693 30 1 4.9100 2.3124 -1.9656 31 1 4.2404 5.1119 -0.9498 32 1 5.8562 4.3656 -0.9459 33 1 7.0552 9.0578 -4.4991 34 1 2.1647 -3.3533 0.0142 35 1 0.8243 -2.5891 0.9013 36 1 0.8238 -2.5959 -0.8786 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000341938941.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:17 Heat of formation + Delta-G solvation = 16.018310 kcal Electronic energy + Delta-G solvation = -19971.140014 eV Core-core repulsion = 16774.746614 eV Total energy + Delta-G solvation = -3196.393400 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.14161 -39.27938 -38.51153 -37.04504 -35.08173 -34.68879 -33.33419 -30.78089 -29.00672 -28.03028 -27.20108 -25.66149 -23.76426 -22.80214 -20.61436 -19.67509 -19.27716 -17.95390 -17.63750 -17.14031 -17.04429 -16.31474 -15.94275 -15.14427 -15.02318 -15.00141 -14.92788 -14.69460 -14.43928 -14.32214 -13.79549 -13.73213 -13.66518 -13.58546 -13.51951 -13.14732 -13.01906 -12.86328 -12.71350 -12.26790 -12.22430 -11.95890 -11.81761 -11.17213 -10.99240 -10.90464 -10.59948 -9.60497 -9.01360 -8.52696 -6.24358 -1.05068 0.41451 0.75629 1.11656 1.30567 1.45524 1.48851 1.54848 1.74197 2.23643 2.35579 2.46305 2.66230 2.85479 2.85691 3.27671 3.60707 3.78247 3.85858 3.94808 3.98085 4.24049 4.31084 4.39588 4.51049 4.67423 4.71977 4.79529 4.82023 4.91667 5.01757 5.09391 5.11377 5.17414 5.52105 5.69451 6.10282 6.19352 6.33787 6.91518 7.04146 8.60317 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.024340 B = 0.003129 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.087584 B = 8946.550152 C = 9331.175058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.067 3.933 3 N -0.209 5.209 4 N -0.336 5.336 5 C 0.122 3.878 6 C -0.100 4.100 7 C -0.068 4.068 8 S -0.222 6.222 9 C -0.520 4.520 10 H 0.055 0.945 11 C 0.038 3.962 12 N -0.922 5.922 13 Si 0.924 3.076 14 H -0.257 1.257 15 H -0.264 1.264 16 H -0.233 1.233 17 C 0.492 3.508 18 O -0.559 6.559 19 C -0.157 4.157 20 C 0.294 3.706 21 N -0.440 5.440 22 C 0.077 3.923 23 C -0.134 4.134 24 H 0.106 0.894 25 H 0.085 0.915 26 H 0.116 0.884 27 H 0.101 0.899 28 H 0.134 0.866 29 H 0.086 0.914 30 H 0.056 0.944 31 H 0.086 0.914 32 H 0.068 0.932 33 H 0.277 0.723 34 H 0.061 0.939 35 H 0.135 0.865 36 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.003 -21.415 9.275 31.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.103 4.103 3 N -0.033 5.033 4 N -0.153 5.153 5 C 0.001 3.999 6 C -0.140 4.140 7 C -0.217 4.217 8 S 0.006 5.994 9 C -0.668 4.668 10 H 0.073 0.927 11 C -0.166 4.166 12 N -0.560 5.560 13 Si 0.745 3.255 14 H -0.182 1.182 15 H -0.189 1.189 16 H -0.157 1.157 17 C 0.288 3.712 18 O -0.438 6.438 19 C -0.172 4.172 20 C -0.020 4.020 21 N -0.118 5.118 22 C 0.067 3.933 23 C -0.190 4.190 24 H 0.124 0.876 25 H 0.104 0.896 26 H 0.135 0.865 27 H 0.120 0.880 28 H 0.152 0.848 29 H 0.105 0.895 30 H 0.075 0.925 31 H 0.105 0.895 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.153 0.847 36 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -19.538 -22.171 8.238 30.678 hybrid contribution 1.464 0.870 0.493 1.773 sum -18.074 -21.301 8.731 29.268 Atomic orbital electron populations 1.20908 0.81967 1.06193 1.05805 1.22419 1.00082 0.85068 1.02721 1.70540 0.94499 1.30130 1.08158 1.46616 1.02190 1.09027 1.57486 1.22138 1.00432 0.79185 0.98154 1.21492 1.01885 0.94310 0.96265 1.22964 1.03225 0.98793 0.96711 1.83935 1.81270 1.21903 1.12262 1.22320 1.46451 1.01729 0.96259 0.92694 1.25750 0.93072 0.94129 1.03690 1.70034 1.41019 1.10956 1.33957 0.85736 0.79439 0.81492 0.78830 1.18171 1.18875 1.15695 1.19138 0.87459 0.85501 0.79150 1.90985 1.14093 1.86282 1.52424 1.18059 0.92573 0.86661 1.19914 1.24643 0.92657 0.91878 0.92860 1.81253 1.07575 1.12482 1.10457 1.22028 0.89869 0.99592 0.81830 1.21392 1.01109 0.88821 1.07640 0.87566 0.89644 0.86512 0.88040 0.84788 0.89546 0.92538 0.89541 0.91364 0.91381 0.92007 0.84746 0.84977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.03 9.79 71.24 0.70 0.66 16 2 C 0.07 0.65 6.86 43.20 0.30 0.95 16 3 N -0.21 -3.50 10.71 -47.57 -0.51 -4.01 16 4 N -0.34 -7.58 3.22 -466.60 -1.50 -9.08 16 5 C 0.12 2.84 5.57 86.38 0.48 3.32 16 6 C -0.10 -2.92 5.54 30.60 0.17 -2.75 16 7 C -0.07 -2.50 5.67 71.98 0.41 -2.09 16 8 S -0.22 -10.65 19.41 -56.49 -1.10 -11.75 16 9 C -0.52 -30.55 10.04 67.96 0.68 -29.87 16 10 H 0.05 3.48 8.03 -2.91 -0.02 3.46 16 11 C 0.04 2.26 5.50 84.86 0.47 2.73 16 12 N -0.92 -56.82 13.97 21.65 0.30 -56.51 16 13 Si 0.92 44.31 27.74 68.60 1.90 46.21 16 14 H -0.26 -11.81 7.11 99.48 0.71 -11.11 16 15 H -0.26 -12.06 7.11 99.48 0.71 -11.36 16 16 H -0.23 -10.93 6.74 99.48 0.67 -10.26 16 17 C 0.49 13.38 7.67 86.48 0.66 14.04 16 18 O -0.56 -20.20 16.33 -5.08 -0.08 -20.28 16 19 C -0.16 -3.25 5.96 -19.50 -0.12 -3.36 16 20 C 0.29 7.30 13.60 88.33 1.20 8.50 16 21 N -0.44 -12.59 18.54 19.00 0.35 -12.23 16 22 C 0.08 0.81 5.99 -19.16 -0.11 0.69 16 23 C -0.13 -0.24 8.81 71.24 0.63 0.38 16 24 H 0.11 -0.29 8.14 -2.39 -0.02 -0.31 16 25 H 0.08 0.17 8.14 -2.39 -0.02 0.15 16 26 H 0.12 -0.63 6.72 -2.39 -0.02 -0.65 16 27 H 0.10 2.56 7.38 -2.39 -0.02 2.54 16 28 H 0.13 2.39 8.13 -2.39 -0.02 2.37 16 29 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 30 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.09 2.98 8.14 -2.40 -0.02 2.96 16 32 H 0.07 2.59 8.14 -2.40 -0.02 2.57 16 33 H 0.28 15.73 8.31 -92.71 -0.77 14.95 16 34 H 0.06 0.39 6.66 -2.39 -0.02 0.37 16 35 H 0.13 -0.54 8.14 -2.39 -0.02 -0.56 16 36 H 0.13 -0.46 7.56 -2.39 -0.02 -0.47 16 Total: -1.00 -81.47 331.64 5.90 -75.58 By element: Atomic # 1 Polarization: -2.20 SS G_CDS: 1.07 Total: -1.13 kcal Atomic # 6 Polarization: -12.24 SS G_CDS: 5.46 Total: -6.78 kcal Atomic # 7 Polarization: -80.49 SS G_CDS: -1.36 Total: -81.84 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: -0.08 Total: -20.28 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 1.90 Total: 46.21 kcal Atomic # 16 Polarization: -10.65 SS G_CDS: -1.10 Total: -11.75 kcal Total: -81.47 5.90 -75.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341938941.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.594 kcal (2) G-P(sol) polarization free energy of solvation -81.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds