Wall clock time and date at job start Tue Mar 31 2020 06:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.38120 * 120.87298 * 250.78609 * 3 2 1 5 5 N 1.34391 * 120.34438 * 179.76507 * 4 3 2 6 6 H 0.96998 * 118.81861 * 180.24305 * 5 4 3 7 7 C 1.35391 * 122.35074 * 0.53652 * 5 4 3 8 8 C 1.35145 * 121.78266 * 359.72723 * 7 5 4 9 9 C 1.41361 * 119.37178 * 0.02562 * 8 7 5 10 10 N 1.34041 * 121.05450 * 180.02562 * 9 8 7 11 11 C 1.33246 * 119.99831 * 355.48144 * 10 9 8 12 12 O 1.21947 * 119.99599 * 64.12106 * 11 10 9 13 13 C 1.48192 * 120.00184 * 244.12388 * 11 10 9 14 14 C 1.39818 * 120.01444 * 359.72721 * 13 11 10 15 15 C 1.38351 * 120.37243 * 179.74484 * 14 13 11 16 16 C 1.37746 * 120.39515 * 0.55184 * 15 14 13 17 17 C 1.40744 * 120.01548 * 359.70541 * 16 15 14 18 18 C 1.41430 * 120.18387 * 180.02562 * 17 16 15 19 19 H 1.07998 * 120.00018 * 34.22039 * 18 17 16 20 20 C 1.39937 * 119.99930 * 214.21426 * 18 17 16 21 21 N 1.30829 * 119.99965 * 356.69968 * 20 18 17 22 22 Si 1.86800 * 119.99859 * 176.70069 * 20 18 17 23 23 H 1.48504 * 109.47232 * 90.00115 * 22 20 18 24 24 H 1.48503 * 109.47117 * 210.00220 * 22 20 18 25 25 H 1.48503 * 109.47217 * 330.00134 * 22 20 18 26 26 C 1.38874 * 120.01312 * 180.02562 * 13 11 10 27 27 H 1.08006 * 119.82517 * 0.02562 * 4 3 2 28 28 H 1.08003 * 119.10639 * 179.71001 * 7 5 4 29 29 H 1.07999 * 120.31048 * 179.97438 * 8 7 5 30 30 H 1.08000 * 119.81372 * 359.97438 * 14 13 11 31 31 H 1.08002 * 119.80583 * 180.27445 * 15 14 13 32 32 H 1.07998 * 119.99257 * 179.72309 * 16 15 14 33 33 H 0.97005 * 119.99840 * 180.02562 * 21 20 18 34 34 H 1.08003 * 120.19612 * 359.95427 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2766 0.3911 1.1195 5 7 4.6204 0.3831 1.1093 6 1 5.0957 0.6583 1.9089 7 6 5.3345 0.0103 0.0211 8 6 4.7339 -0.3832 -1.1238 9 6 3.3222 -0.4077 -1.1933 10 7 2.6915 -0.7926 -2.3116 11 6 3.3931 -1.0736 -3.4090 12 8 4.1712 -2.0126 -3.4115 13 6 3.2280 -0.2449 -4.6265 14 6 2.3318 0.8283 -4.6258 15 6 2.1756 1.6100 -5.7566 16 6 2.8927 1.3332 -6.8996 17 6 3.7954 0.2536 -6.9203 18 6 4.5338 -0.0335 -8.0919 19 1 4.8617 0.7705 -8.7342 20 6 4.8398 -1.3593 -8.4188 21 7 4.4992 -2.3282 -7.6083 22 14 5.7346 -1.7456 -10.0124 23 1 7.2003 -1.7274 -9.7741 24 1 5.3282 -3.0900 -10.4949 25 1 5.3867 -0.7266 -11.0351 26 6 3.9587 -0.5379 -5.7705 27 1 2.7478 0.7004 2.0090 28 1 6.4133 0.0281 0.0693 29 1 5.3269 -0.6753 -1.9779 30 1 1.7610 1.0506 -3.7363 31 1 1.4841 2.4395 -5.7445 32 1 2.7624 1.9449 -7.7801 33 1 4.7117 -3.2472 -7.8348 34 1 4.6489 -1.3685 -5.7764 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344371341.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:56 Heat of formation + Delta-G solvation = 76.385193 kcal Electronic energy + Delta-G solvation = -21407.659474 eV Core-core repulsion = 18078.439828 eV Total energy + Delta-G solvation = -3329.219647 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.090 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.89830 -38.95912 -37.00141 -36.47607 -34.73564 -33.53552 -32.08735 -31.10115 -29.74558 -29.30270 -25.29613 -24.78722 -24.41792 -21.75473 -20.76742 -20.48396 -19.17298 -17.79875 -17.54257 -16.75477 -15.97289 -15.55874 -15.03821 -14.91146 -14.66672 -14.28968 -14.05601 -13.34805 -13.27220 -13.07160 -13.02084 -12.85760 -12.67024 -12.45601 -11.89158 -11.59241 -11.20914 -11.09489 -10.97539 -10.60156 -10.37083 -10.16371 -9.89313 -9.68744 -9.55180 -9.17441 -8.63307 -7.62520 -7.51160 -7.27675 -6.54416 -4.35253 0.59964 0.86982 2.11387 2.37406 2.85994 2.86525 2.93553 3.13689 3.16931 3.22832 3.58131 3.77274 3.92177 4.02746 4.08265 4.31092 4.69813 4.81765 4.96069 5.22085 5.31238 5.61750 5.66751 5.97777 6.23073 6.38844 6.45844 6.54676 6.66448 6.90459 7.12088 7.16648 7.37266 7.50809 7.68515 7.82444 7.93986 8.01038 8.10219 8.29865 8.61845 8.86300 8.95382 8.97150 10.36914 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.022440 B = 0.003899 C = 0.003613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.468970 B = 7179.717889 C = 7747.865348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C 0.283 3.717 3 C -0.115 4.115 4 C 0.191 3.809 5 N -0.582 5.582 6 H 0.426 0.574 7 C 0.115 3.885 8 C -0.213 4.213 9 C 0.305 3.695 10 N -0.585 5.585 11 C 0.538 3.462 12 O -0.521 6.521 13 C -0.140 4.140 14 C -0.175 4.175 15 C -0.118 4.118 16 C -0.192 4.192 17 C 0.088 3.912 18 C -0.468 4.468 19 H 0.077 0.923 20 C 0.069 3.931 21 N -0.807 5.807 22 Si 0.916 3.084 23 H -0.270 1.270 24 H -0.278 1.278 25 H -0.264 1.264 26 C -0.083 4.083 27 H 0.181 0.819 28 H 0.171 0.829 29 H 0.159 0.841 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.097 0.903 33 H 0.280 0.720 34 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.695 6.478 19.916 21.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.099 5.099 2 C -0.032 4.032 3 C -0.129 4.129 4 C 0.054 3.946 5 N -0.185 5.185 6 H 0.262 0.738 7 C -0.013 4.013 8 C -0.239 4.239 9 C 0.136 3.864 10 N -0.314 5.314 11 C 0.331 3.669 12 O -0.399 6.399 13 C -0.143 4.143 14 C -0.194 4.194 15 C -0.136 4.136 16 C -0.211 4.211 17 C 0.086 3.914 18 C -0.499 4.499 19 H 0.095 0.905 20 C -0.147 4.147 21 N -0.434 5.434 22 Si 0.741 3.259 23 H -0.195 1.195 24 H -0.203 1.203 25 H -0.188 1.188 26 C -0.103 4.103 27 H 0.198 0.802 28 H 0.189 0.811 29 H 0.176 0.824 30 H 0.117 0.883 31 H 0.111 0.889 32 H 0.115 0.885 33 H 0.091 0.909 34 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 3.582 5.457 19.326 20.399 hybrid contribution 1.444 -0.225 -0.686 1.614 sum 5.026 5.233 18.640 20.002 Atomic orbital electron populations 1.81213 1.11745 1.09634 1.07306 1.24597 0.91467 0.93437 0.93707 1.16082 0.85509 1.16796 0.94520 1.21901 0.83219 0.91540 0.97930 1.40604 1.05257 1.57096 1.15548 0.73783 1.21642 0.97895 0.95341 0.86394 1.21874 0.95065 1.07183 0.99814 1.19426 0.89152 0.89170 0.88659 1.68483 1.37811 1.24977 1.00118 1.19993 0.75202 0.83645 0.88078 1.90769 1.32470 1.29038 1.87575 1.19697 1.02681 0.98011 0.93886 1.20603 1.02498 0.98148 0.98200 1.20530 1.00069 0.99064 0.93942 1.21286 1.00080 1.02697 0.97066 1.17630 0.90744 0.90662 0.92341 1.19471 1.31169 0.92652 1.06589 0.90484 1.25898 0.94155 0.96186 0.98453 1.69739 1.37315 1.01109 1.35195 0.86196 0.79789 0.78376 0.81578 1.19518 1.20297 1.18771 1.21959 0.98736 1.00235 0.89337 0.80202 0.81138 0.82400 0.88328 0.88862 0.88522 0.90875 0.83965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -6.95 18.54 41.84 0.78 -6.17 16 2 C 0.28 3.97 15.07 -22.47 -0.34 3.63 16 3 C -0.12 -1.28 5.92 -104.49 -0.62 -1.90 16 4 C 0.19 0.84 10.95 -16.47 -0.18 0.66 16 5 N -0.58 -1.38 5.16 -12.67 -0.07 -1.44 16 6 H 0.43 -0.97 8.88 -40.82 -0.36 -1.34 16 7 C 0.11 0.64 11.10 -17.08 -0.19 0.45 16 8 C -0.21 -2.63 9.04 -39.50 -0.36 -2.98 16 9 C 0.31 4.73 6.77 -82.19 -0.56 4.18 16 10 N -0.58 -12.41 9.18 -9.47 -0.09 -12.49 16 11 C 0.54 13.20 6.17 -12.85 -0.08 13.12 16 12 O -0.52 -13.66 15.79 4.97 0.08 -13.58 16 13 C -0.14 -3.64 5.87 -104.98 -0.62 -4.26 16 14 C -0.17 -4.24 9.59 -38.95 -0.37 -4.62 16 15 C -0.12 -2.76 10.01 -39.72 -0.40 -3.16 16 16 C -0.19 -4.82 9.78 -38.82 -0.38 -5.20 16 17 C 0.09 2.45 5.55 -106.87 -0.59 1.86 16 18 C -0.47 -12.83 9.05 -37.73 -0.34 -13.17 16 19 H 0.08 2.00 7.85 -52.49 -0.41 1.58 16 20 C 0.07 1.82 5.41 -17.34 -0.09 1.72 16 21 N -0.81 -22.54 10.60 55.55 0.59 -21.95 16 22 Si 0.92 19.66 29.56 -169.99 -5.02 14.63 16 23 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 24 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 25 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 26 C -0.08 -2.33 8.21 -38.48 -0.32 -2.64 16 27 H 0.18 -0.01 8.06 -52.48 -0.42 -0.44 16 28 H 0.17 0.31 8.06 -52.48 -0.42 -0.12 16 29 H 0.16 2.41 6.38 -52.49 -0.33 2.07 16 30 H 0.10 2.26 7.53 -52.49 -0.40 1.86 16 31 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 32 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 33 H 0.28 7.23 8.30 -40.82 -0.34 6.89 16 34 H 0.14 4.28 5.71 -52.48 -0.30 3.98 16 LS Contribution 315.51 15.07 4.75 4.75 Total: -1.00 -39.60 315.51 -7.04 -46.64 By element: Atomic # 1 Polarization: 4.54 SS G_CDS: -2.63 Total: 1.91 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: -5.43 Total: -12.30 kcal Atomic # 7 Polarization: -43.27 SS G_CDS: 1.21 Total: -42.06 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: 0.08 Total: -13.58 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.02 Total: 14.63 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -39.60 -7.04 -46.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344371341.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.028 kcal (2) G-P(sol) polarization free energy of solvation -39.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds