Wall clock time and date at job start Tue Mar 31 2020 06:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33641 * 126.03730 * 2 1 4 4 N 1.31778 * 114.50181 * 179.97438 * 3 2 1 5 5 C 1.29029 * 117.12461 * 0.02562 * 4 3 2 6 6 C 1.50700 * 124.91704 * 180.02562 * 5 4 3 7 7 C 1.50694 * 109.47477 * 89.97545 * 6 5 4 8 8 O 1.21283 * 119.99605 * 359.97438 * 7 6 5 9 9 N 1.34772 * 120.00468 * 179.97438 * 7 6 5 10 10 C 1.46493 * 120.00294 * 179.97438 * 9 7 6 11 11 C 1.50710 * 109.47041 * 89.99993 * 10 9 7 12 12 H 1.08000 * 119.99645 * 0.02562 * 11 10 9 13 13 C 1.37874 * 120.00220 * 179.97438 * 11 10 9 14 14 N 1.31512 * 120.00386 * 179.97438 * 13 11 10 15 15 Si 1.86806 * 120.00037 * 0.02562 * 13 11 10 16 16 H 1.48504 * 109.47025 * 89.99529 * 15 13 11 17 17 H 1.48495 * 109.47227 * 210.00182 * 15 13 11 18 18 H 1.48506 * 109.47022 * 330.00130 * 15 13 11 19 19 C 1.46500 * 119.99692 * 359.97438 * 9 7 6 20 20 C 1.52998 * 109.47158 * 90.00021 * 19 9 7 21 21 C 1.47200 * 109.47191 * 180.02562 * 20 19 9 22 22 N 9.11593 * 166.34041 * 237.56699 * 2 1 3 23 23 S 1.70982 * 110.16446 * 359.72487 * 5 4 3 24 24 H 1.09002 * 109.47152 * 90.00002 * 1 2 3 25 25 H 1.09001 * 109.46980 * 330.00102 * 1 2 3 26 26 H 1.09004 * 109.47113 * 210.00083 * 1 2 3 27 27 H 1.07996 * 122.75014 * 0.02562 * 3 2 1 28 28 H 1.09005 * 109.47178 * 209.97478 * 6 5 4 29 29 H 1.09001 * 109.46918 * 329.96982 * 6 5 4 30 30 H 1.08998 * 109.47287 * 209.99653 * 10 9 7 31 31 H 1.09000 * 109.47228 * 330.00552 * 10 9 7 32 32 H 0.97001 * 120.00405 * 179.97438 * 14 13 11 33 33 H 1.08996 * 109.47224 * 209.99950 * 19 9 7 34 34 H 1.09001 * 109.47347 * 330.00055 * 19 9 7 35 35 H 1.08996 * 109.46995 * 300.00069 * 20 19 9 36 36 H 1.09001 * 109.46964 * 59.99799 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2933 1.0807 0.0000 4 7 3.5844 0.8171 0.0005 5 6 3.9312 -0.4257 0.0005 6 6 5.3532 -0.9245 0.0016 7 6 5.8263 -1.0906 1.4227 8 8 5.0820 -0.8292 2.3439 9 7 7.0763 -1.5296 1.6699 10 6 7.5363 -1.6905 3.0514 11 6 7.2230 -3.0863 3.5258 12 1 6.7309 -3.7838 2.8641 13 6 7.5656 -3.4732 4.8040 14 7 7.2919 -4.6910 5.2182 15 14 8.4174 -2.2670 5.9483 16 1 7.3975 -1.5099 6.7176 17 1 9.2946 -3.0109 6.8875 18 1 9.2373 -1.3212 5.1491 19 6 7.9750 -1.8459 0.5571 20 6 8.7660 -0.5950 0.1690 21 6 9.6686 -0.9126 -0.9495 22 7 10.3651 -1.1545 -1.8170 23 16 2.5436 -1.4247 0.0074 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 0.8900 0.5138 26 1 -0.3633 -0.8900 0.5139 27 1 1.9025 2.0875 0.0004 28 1 5.4019 -1.8846 -0.5121 29 1 5.9910 -0.2050 -0.5120 30 1 8.6124 -1.5241 3.0978 31 1 7.0288 -0.9674 3.6900 32 1 7.5332 -4.9633 6.1174 33 1 8.6655 -2.6329 0.8601 34 1 7.3897 -2.1853 -0.2975 35 1 8.0755 0.1920 -0.1340 36 1 9.3513 -0.2556 1.0237 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345228804.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:00 Heat of formation + Delta-G solvation = 35.118082 kcal Electronic energy + Delta-G solvation = -20435.909285 eV Core-core repulsion = 17240.344113 eV Total energy + Delta-G solvation = -3195.565172 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.93887 -39.07749 -36.89681 -35.38120 -33.39218 -32.76246 -31.08497 -30.75229 -27.98850 -25.95362 -24.17020 -23.76855 -22.31291 -19.56154 -18.64240 -17.90584 -17.73858 -16.89536 -16.73133 -15.83417 -15.08796 -14.87751 -14.68674 -14.55654 -14.04631 -13.82922 -13.53557 -13.26997 -13.12604 -12.79707 -12.70408 -12.51336 -12.49447 -12.29808 -12.11117 -11.69174 -11.60445 -11.14761 -11.09476 -10.90479 -10.58688 -10.23991 -9.63239 -9.56869 -9.32368 -9.08336 -8.66222 -8.64246 -7.97238 -6.14001 -4.13837 0.74355 1.40224 1.82695 2.64898 2.74389 2.86534 3.13276 3.25397 3.30712 3.33768 3.50698 4.06806 4.19403 4.34557 4.80181 4.85828 4.93460 4.99703 5.05520 5.07239 5.19986 5.24056 5.32594 5.39323 5.49273 5.63745 5.71240 5.79627 5.98622 6.21771 6.55267 6.84023 7.13195 7.51379 7.53174 7.81259 7.99071 8.38570 8.73868 8.89370 9.45458 10.99138 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.011666 B = 0.005137 C = 0.003893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.617493 B = 5449.791176 C = 7191.389079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.234 4.234 3 C 0.035 3.965 4 N -0.467 5.467 5 C 0.072 3.928 6 C -0.072 4.072 7 C 0.516 3.484 8 O -0.519 6.519 9 N -0.590 5.590 10 C 0.215 3.785 11 C -0.532 4.532 12 H 0.076 0.924 13 C 0.074 3.926 14 N -0.895 5.895 15 Si 0.874 3.126 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.265 1.265 19 C 0.115 3.885 20 C -0.052 4.052 21 C 0.216 3.784 22 N -0.442 5.442 23 S 0.141 5.859 24 H 0.073 0.927 25 H 0.077 0.923 26 H 0.070 0.930 27 H 0.171 0.829 28 H 0.112 0.888 29 H 0.119 0.881 30 H 0.034 0.966 31 H 0.040 0.960 32 H 0.265 0.735 33 H 0.099 0.901 34 H 0.080 0.920 35 H 0.109 0.891 36 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.668 9.159 -12.481 17.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.355 4.355 3 C -0.117 4.117 4 N -0.181 5.181 5 C -0.206 4.206 6 C -0.116 4.116 7 C 0.301 3.699 8 O -0.394 6.394 9 N -0.322 5.322 10 C 0.095 3.905 11 C -0.571 4.571 12 H 0.094 0.906 13 C -0.129 4.129 14 N -0.533 5.533 15 Si 0.701 3.299 16 H -0.199 1.199 17 H -0.211 1.211 18 H -0.189 1.189 19 C -0.011 4.011 20 C -0.093 4.093 21 C -0.103 4.103 22 N -0.120 5.120 23 S 0.397 5.603 24 H 0.092 0.908 25 H 0.096 0.904 26 H 0.089 0.911 27 H 0.188 0.812 28 H 0.131 0.869 29 H 0.137 0.863 30 H 0.052 0.948 31 H 0.058 0.942 32 H 0.075 0.925 33 H 0.118 0.882 34 H 0.098 0.902 35 H 0.127 0.873 36 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -6.741 8.128 -13.083 16.813 hybrid contribution -0.051 1.445 1.131 1.836 sum -6.792 9.573 -11.952 16.752 Atomic orbital electron populations 1.20194 0.86991 1.03400 1.02595 1.25977 1.01564 0.95413 1.12586 1.21586 0.86940 0.99857 1.03284 1.66164 1.17761 1.18588 1.15573 1.26106 0.99749 0.91519 1.03258 1.20418 0.89787 1.03480 0.97895 1.19938 0.82260 0.78049 0.89693 1.90733 1.53504 1.49315 1.45893 1.47834 1.11633 1.64617 1.08100 1.19749 0.94810 0.98501 0.77426 1.21293 1.40019 0.96201 0.99539 0.90601 1.24842 0.95321 0.95065 0.97630 1.69885 1.47098 1.17826 1.18518 0.86887 0.80053 0.81499 0.81453 1.19925 1.21089 1.18936 1.21382 0.94000 0.95245 0.90492 1.19905 0.95926 1.01275 0.92220 1.29142 0.93772 0.93282 0.94060 1.81326 1.10446 1.08686 1.11506 1.83994 0.98331 1.10814 1.67185 0.90792 0.90396 0.91106 0.81158 0.86948 0.86333 0.94814 0.94224 0.92492 0.88243 0.90207 0.87309 0.86564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.60 10.42 36.01 0.38 -0.22 16 2 C -0.23 -2.80 6.60 -35.92 -0.24 -3.04 16 3 C 0.03 0.45 11.25 -19.19 -0.22 0.24 16 4 N -0.47 -7.16 10.54 -11.86 -0.13 -7.29 16 5 C 0.07 1.06 5.88 -13.46 -0.08 0.98 16 6 C -0.07 -0.94 4.84 -29.04 -0.14 -1.08 16 7 C 0.52 9.22 7.67 -10.99 -0.08 9.14 16 8 O -0.52 -11.88 15.61 5.55 0.09 -11.79 16 9 N -0.59 -10.16 2.46 -175.07 -0.43 -10.59 16 10 C 0.22 4.67 4.23 -5.19 -0.02 4.65 16 11 C -0.53 -14.18 9.94 -34.44 -0.34 -14.52 16 12 H 0.08 2.22 8.06 -52.49 -0.42 1.80 16 13 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 14 N -0.90 -26.60 13.96 55.43 0.77 -25.83 16 15 Si 0.87 20.53 27.47 -169.99 -4.67 15.86 16 16 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 17 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 18 H -0.26 -5.72 6.54 56.52 0.37 -5.35 16 19 C 0.11 1.39 5.17 -4.04 -0.02 1.37 16 20 C -0.05 -0.48 6.03 -29.52 -0.18 -0.66 16 21 C 0.22 2.42 15.44 -20.68 -0.32 2.10 16 22 N -0.44 -6.21 18.55 42.25 0.78 -5.43 16 23 S 0.14 1.89 23.18 -107.50 -2.49 -0.60 16 24 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.17 1.73 8.06 -52.49 -0.42 1.30 16 28 H 0.11 1.16 7.40 -51.93 -0.38 0.77 16 29 H 0.12 1.19 7.19 -51.93 -0.37 0.82 16 30 H 0.03 0.68 7.13 -51.93 -0.37 0.31 16 31 H 0.04 0.94 6.85 -51.93 -0.36 0.58 16 32 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 33 H 0.10 1.30 8.07 -51.93 -0.42 0.88 16 34 H 0.08 0.77 6.44 -51.93 -0.33 0.44 16 35 H 0.11 0.82 7.22 -51.93 -0.37 0.44 16 36 H 0.12 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 332.73 15.07 5.01 5.01 Total: -1.00 -35.41 332.73 -6.73 -42.14 By element: Atomic # 1 Polarization: 1.92 SS G_CDS: -4.32 Total: -2.40 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: -1.36 Total: 0.91 kcal Atomic # 7 Polarization: -50.14 SS G_CDS: 1.00 Total: -49.13 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: 0.09 Total: -11.79 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -4.67 Total: 15.86 kcal Atomic # 16 Polarization: 1.89 SS G_CDS: -2.49 Total: -0.60 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -35.41 -6.73 -42.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345228804.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.259 kcal (2) G-P(sol) polarization free energy of solvation -35.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds