Wall clock time and date at job start Tue Mar 31 2020 06:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33641 * 126.03730 * 2 1 4 4 N 1.31778 * 114.50181 * 179.97438 * 3 2 1 5 5 C 1.29029 * 117.12461 * 0.02562 * 4 3 2 6 6 C 1.50700 * 124.91704 * 180.02562 * 5 4 3 7 7 C 1.50694 * 109.47477 * 89.97545 * 6 5 4 8 8 O 1.21283 * 119.99605 * 359.97438 * 7 6 5 9 9 N 1.34772 * 120.00468 * 179.97438 * 7 6 5 10 10 C 1.46493 * 120.00294 * 179.97438 * 9 7 6 11 11 C 1.50710 * 109.47041 * 89.99993 * 10 9 7 12 12 H 1.08000 * 119.99645 * 0.02562 * 11 10 9 13 13 C 1.37874 * 120.00220 * 179.97438 * 11 10 9 14 14 N 1.31512 * 120.00386 * 179.97438 * 13 11 10 15 15 Si 1.86806 * 120.00037 * 0.02562 * 13 11 10 16 16 H 1.48504 * 109.47025 * 89.99529 * 15 13 11 17 17 H 1.48495 * 109.47227 * 210.00182 * 15 13 11 18 18 H 1.48506 * 109.47022 * 330.00130 * 15 13 11 19 19 C 1.46500 * 119.99692 * 359.97438 * 9 7 6 20 20 C 1.52998 * 109.47158 * 90.00021 * 19 9 7 21 21 C 1.47200 * 109.47191 * 180.02562 * 20 19 9 22 22 N 9.11593 * 166.34041 * 237.56699 * 2 1 3 23 23 S 1.70982 * 110.16446 * 359.72487 * 5 4 3 24 24 H 1.09002 * 109.47152 * 90.00002 * 1 2 3 25 25 H 1.09001 * 109.46980 * 330.00102 * 1 2 3 26 26 H 1.09004 * 109.47113 * 210.00083 * 1 2 3 27 27 H 1.07996 * 122.75014 * 0.02562 * 3 2 1 28 28 H 1.09005 * 109.47178 * 209.97478 * 6 5 4 29 29 H 1.09001 * 109.46918 * 329.96982 * 6 5 4 30 30 H 1.08998 * 109.47287 * 209.99653 * 10 9 7 31 31 H 1.09000 * 109.47228 * 330.00552 * 10 9 7 32 32 H 0.97001 * 120.00405 * 179.97438 * 14 13 11 33 33 H 1.08996 * 109.47224 * 209.99950 * 19 9 7 34 34 H 1.09001 * 109.47347 * 330.00055 * 19 9 7 35 35 H 1.08996 * 109.46995 * 300.00069 * 20 19 9 36 36 H 1.09001 * 109.46964 * 59.99799 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2933 1.0807 0.0000 4 7 3.5844 0.8171 0.0005 5 6 3.9312 -0.4257 0.0005 6 6 5.3532 -0.9245 0.0016 7 6 5.8263 -1.0906 1.4227 8 8 5.0820 -0.8292 2.3439 9 7 7.0763 -1.5296 1.6699 10 6 7.5363 -1.6905 3.0514 11 6 7.2230 -3.0863 3.5258 12 1 6.7309 -3.7838 2.8641 13 6 7.5656 -3.4732 4.8040 14 7 7.2919 -4.6910 5.2182 15 14 8.4174 -2.2670 5.9483 16 1 7.3975 -1.5099 6.7176 17 1 9.2946 -3.0109 6.8875 18 1 9.2373 -1.3212 5.1491 19 6 7.9750 -1.8459 0.5571 20 6 8.7660 -0.5950 0.1690 21 6 9.6686 -0.9126 -0.9495 22 7 10.3651 -1.1545 -1.8170 23 16 2.5436 -1.4247 0.0074 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 0.8900 0.5138 26 1 -0.3633 -0.8900 0.5139 27 1 1.9025 2.0875 0.0004 28 1 5.4019 -1.8846 -0.5121 29 1 5.9910 -0.2050 -0.5120 30 1 8.6124 -1.5241 3.0978 31 1 7.0288 -0.9674 3.6900 32 1 7.5332 -4.9633 6.1174 33 1 8.6655 -2.6329 0.8601 34 1 7.3897 -2.1853 -0.2975 35 1 8.0755 0.1920 -0.1340 36 1 9.3513 -0.2556 1.0237 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345228804.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:59 Heat of formation + Delta-G solvation = 10.894714 kcal Electronic energy + Delta-G solvation = -20436.959689 eV Core-core repulsion = 17240.344113 eV Total energy + Delta-G solvation = -3196.615576 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.13053 -40.25107 -37.94745 -36.70864 -34.87754 -34.17733 -32.38728 -31.75568 -29.60324 -26.96936 -25.23778 -24.99324 -23.85917 -20.69289 -19.83050 -19.13163 -18.94227 -18.45860 -17.99826 -17.16592 -16.32121 -16.11420 -15.77452 -15.64521 -15.49673 -14.81006 -14.78129 -14.43671 -14.26926 -14.02636 -13.76729 -13.55604 -13.50488 -13.48806 -13.34997 -13.07275 -12.80831 -12.65245 -12.38584 -12.05039 -11.96761 -11.83180 -11.67230 -10.79444 -10.75350 -10.58933 -10.11683 -9.65187 -9.47270 -8.26681 -6.30805 -0.25730 0.43407 0.83336 1.38974 1.43146 1.49989 1.67304 1.77377 1.87173 1.90215 2.31161 2.37204 3.08171 3.15162 3.18800 3.72707 4.01762 4.06152 4.09202 4.13098 4.30514 4.37284 4.51239 4.65156 4.74803 4.84002 4.89588 4.92092 5.02686 5.07623 5.13593 5.33440 5.53597 5.62699 6.29903 6.61459 6.67062 6.72725 6.80141 7.27548 7.41267 8.90013 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.011666 B = 0.005137 C = 0.003893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.617493 B = 5449.791176 C = 7191.389079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.222 4.222 3 C 0.012 3.988 4 N -0.486 5.486 5 C 0.049 3.951 6 C -0.064 4.064 7 C 0.512 3.488 8 O -0.579 6.579 9 N -0.591 5.591 10 C 0.222 3.778 11 C -0.531 4.531 12 H 0.033 0.967 13 C 0.011 3.989 14 N -0.948 5.948 15 Si 0.940 3.060 16 H -0.282 1.282 17 H -0.283 1.283 18 H -0.227 1.227 19 C 0.108 3.892 20 C -0.039 4.039 21 C 0.246 3.754 22 N -0.492 5.492 23 S 0.119 5.881 24 H 0.095 0.905 25 H 0.095 0.905 26 H 0.072 0.928 27 H 0.195 0.805 28 H 0.140 0.860 29 H 0.154 0.846 30 H 0.063 0.937 31 H 0.022 0.978 32 H 0.265 0.735 33 H 0.089 0.911 34 H 0.108 0.892 35 H 0.138 0.862 36 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.408 11.328 -13.683 19.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.343 4.343 3 C -0.138 4.138 4 N -0.200 5.200 5 C -0.228 4.228 6 C -0.106 4.106 7 C 0.299 3.701 8 O -0.458 6.458 9 N -0.321 5.321 10 C 0.100 3.900 11 C -0.570 4.570 12 H 0.051 0.949 13 C -0.187 4.187 14 N -0.589 5.589 15 Si 0.763 3.237 16 H -0.208 1.208 17 H -0.209 1.209 18 H -0.149 1.149 19 C -0.016 4.016 20 C -0.080 4.080 21 C -0.072 4.072 22 N -0.170 5.170 23 S 0.374 5.626 24 H 0.113 0.887 25 H 0.113 0.887 26 H 0.091 0.909 27 H 0.212 0.788 28 H 0.158 0.842 29 H 0.172 0.828 30 H 0.080 0.920 31 H 0.040 0.960 32 H 0.074 0.926 33 H 0.107 0.893 34 H 0.126 0.874 35 H 0.156 0.844 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -6.447 10.312 -14.354 18.813 hybrid contribution -0.274 0.716 1.467 1.655 sum -6.721 11.028 -12.886 18.244 Atomic orbital electron populations 1.20372 0.84373 1.04320 1.04222 1.26435 1.03142 0.94133 1.10575 1.22030 0.86527 1.01290 1.03958 1.66168 1.19060 1.18995 1.15818 1.26358 1.00553 0.91642 1.04294 1.20484 0.89585 1.05927 0.94636 1.20758 0.81598 0.76574 0.91209 1.90702 1.55045 1.51921 1.48148 1.47781 1.12449 1.64214 1.07658 1.19426 0.96071 0.94606 0.79869 1.21612 1.38503 0.97906 0.98944 0.94858 1.25802 0.96433 0.96830 0.99649 1.70052 1.49389 1.20319 1.19131 0.85829 0.79069 0.79482 0.79270 1.20759 1.20907 1.14928 1.21632 0.93816 0.96490 0.89685 1.19870 0.95839 1.00329 0.91940 1.29264 0.92786 0.91790 0.93322 1.81375 1.12145 1.10198 1.13273 1.84026 0.99060 1.12086 1.67412 0.88682 0.88680 0.90898 0.78787 0.84224 0.82832 0.91958 0.95997 0.92571 0.89277 0.87358 0.84432 0.85369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.04 10.42 71.24 0.74 -0.30 16 2 C -0.22 -4.97 6.60 24.64 0.16 -4.80 16 3 C 0.01 0.30 11.25 83.66 0.94 1.24 16 4 N -0.49 -14.24 10.54 -191.45 -2.02 -16.26 16 5 C 0.05 1.39 5.88 88.52 0.52 1.91 16 6 C -0.06 -1.51 4.84 29.10 0.14 -1.37 16 7 C 0.51 17.73 7.67 87.66 0.67 18.41 16 8 O -0.58 -26.75 15.61 -3.04 -0.05 -26.79 16 9 N -0.59 -19.39 2.46 -826.18 -2.03 -21.42 16 10 C 0.22 9.41 4.23 85.64 0.36 9.77 16 11 C -0.53 -28.82 9.94 25.60 0.25 -28.56 16 12 H 0.03 2.03 8.06 -2.91 -0.02 2.01 16 13 C 0.01 0.59 5.47 84.65 0.46 1.05 16 14 N -0.95 -58.24 13.96 21.45 0.30 -57.94 16 15 Si 0.94 42.09 27.47 68.60 1.88 43.98 16 16 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 17 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 18 H -0.23 -8.68 6.54 99.48 0.65 -8.03 16 19 C 0.11 2.32 5.17 86.38 0.45 2.76 16 20 C -0.04 -0.57 6.03 28.79 0.17 -0.40 16 21 C 0.25 4.77 15.44 89.41 1.38 6.15 16 22 N -0.49 -12.85 18.55 20.04 0.37 -12.48 16 23 S 0.12 3.12 23.18 -56.49 -1.31 1.81 16 24 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 27 H 0.20 3.54 8.06 -2.91 -0.02 3.51 16 28 H 0.14 2.49 7.40 -2.38 -0.02 2.47 16 29 H 0.15 2.48 7.19 -2.39 -0.02 2.46 16 30 H 0.06 2.30 7.13 -2.39 -0.02 2.28 16 31 H 0.02 1.02 6.85 -2.39 -0.02 1.01 16 32 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 33 H 0.09 2.15 8.07 -2.39 -0.02 2.13 16 34 H 0.11 1.72 6.44 -2.39 -0.02 1.70 16 35 H 0.14 1.36 7.22 -2.39 -0.02 1.35 16 36 H 0.13 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -81.57 332.73 4.46 -77.11 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: 1.05 Total: 6.13 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: 6.26 Total: 5.86 kcal Atomic # 7 Polarization: -104.72 SS G_CDS: -3.38 Total: -108.10 kcal Atomic # 8 Polarization: -26.75 SS G_CDS: -0.05 Total: -26.79 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 1.88 Total: 43.98 kcal Atomic # 16 Polarization: 3.12 SS G_CDS: -1.31 Total: 1.81 kcal Total: -81.57 4.46 -77.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345228804.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.009 kcal (2) G-P(sol) polarization free energy of solvation -81.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds