Wall clock time and date at job start Tue Mar 31 2020 06:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33893 * 122.08377 * 2 1 4 4 S 1.76257 * 108.18061 * 179.97438 * 3 2 1 5 5 C 1.76177 * 89.82273 * 0.02562 * 4 3 2 6 6 C 1.47945 * 125.46808 * 179.97438 * 5 4 3 7 7 N 1.30928 * 126.43289 * 180.02562 * 6 5 4 8 8 O 1.21296 * 110.06175 * 180.02562 * 7 6 5 9 9 C 1.33682 * 110.06136 * 0.02562 * 8 7 6 10 10 C 1.50706 * 126.41510 * 179.97438 * 9 8 7 11 11 C 1.52999 * 109.46953 * 270.02988 * 10 9 8 12 12 C 1.53006 * 109.46623 * 179.97438 * 11 10 9 13 13 C 1.52999 * 109.46626 * 179.97438 * 12 11 10 14 14 C 1.50706 * 109.46957 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99816 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00340 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99773 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00296 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47086 * 59.99480 * 18 16 14 20 20 H 1.48494 * 109.47288 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46879 * 299.99424 * 18 16 14 22 22 N 1.30938 * 107.16924 * 0.26470 * 9 8 7 23 23 N 1.30197 * 109.06625 * 0.25881 * 5 4 3 24 24 H 1.08999 * 109.47331 * 89.99338 * 1 2 3 25 25 H 1.08994 * 109.47196 * 209.99752 * 1 2 3 26 26 H 1.09000 * 109.47166 * 329.99744 * 1 2 3 27 27 H 1.08002 * 125.91262 * 0.02676 * 3 2 1 28 28 H 1.09000 * 109.46974 * 150.02736 * 10 9 8 29 29 H 1.09001 * 109.46547 * 30.02826 * 10 9 8 30 30 H 1.09000 * 109.47486 * 60.00062 * 11 10 9 31 31 H 1.09001 * 109.47362 * 299.99339 * 11 10 9 32 32 H 1.08993 * 109.46955 * 300.00075 * 12 11 10 33 33 H 1.09000 * 109.47050 * 59.99904 * 12 11 10 34 34 H 1.08993 * 109.47839 * 299.99931 * 13 12 11 35 35 H 1.09000 * 109.47160 * 60.00369 * 13 12 11 36 36 H 0.97000 * 120.00540 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2182 1.1344 0.0000 4 16 3.9291 0.7109 0.0007 5 6 3.5005 -0.9979 0.0002 6 6 4.4604 -2.1237 -0.0001 7 7 4.1633 -3.3988 -0.0010 8 8 5.1785 -4.0626 -0.0005 9 6 6.2495 -3.2625 0.0014 10 6 7.6921 -3.6987 0.0031 11 6 8.1780 -3.8478 1.4462 12 6 9.6424 -4.2912 1.4478 13 6 10.1286 -4.4397 2.8909 14 6 11.5711 -4.8759 2.8926 15 1 12.0894 -5.0312 1.9579 16 6 12.2293 -5.0766 4.0874 17 7 11.5983 -4.8870 5.2256 18 14 14.0176 -5.6166 4.0895 19 1 14.8430 -4.5981 3.3919 20 1 14.4895 -5.7608 5.4901 21 1 14.1420 -6.9196 3.3882 22 7 5.8104 -2.0290 0.0078 23 7 2.2035 -1.1111 -0.0060 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.8136 2.1358 0.0004 28 1 8.2982 -2.9515 -0.5091 29 1 7.7829 -4.6553 -0.5116 30 1 7.5719 -4.5950 1.9584 31 1 8.0872 -2.8912 1.9608 32 1 9.7329 -5.2478 0.9333 33 1 10.2488 -3.5443 0.9355 34 1 10.0382 -3.4829 3.4051 35 1 9.5223 -5.1864 3.4036 36 1 12.0614 -5.0278 6.0662 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000350043596.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:16 Heat of formation + Delta-G solvation = 90.946290 kcal Electronic energy + Delta-G solvation = -19353.201566 eV Core-core repulsion = 16160.057287 eV Total energy + Delta-G solvation = -3193.144279 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -45.74061 -40.12628 -36.40208 -35.66419 -33.61148 -32.50739 -31.65302 -29.43067 -28.11714 -26.63764 -25.83746 -23.78527 -22.68293 -21.54883 -20.21185 -19.48883 -18.61309 -18.23412 -17.31391 -16.22746 -16.19102 -15.30047 -15.21096 -14.70833 -14.39297 -14.20524 -13.71351 -13.17554 -13.07873 -12.99703 -12.88725 -12.32652 -12.15439 -11.87304 -11.74253 -11.65224 -11.32398 -11.04294 -10.67619 -10.63928 -10.61863 -10.36280 -10.19099 -9.78955 -9.72883 -9.34209 -9.08596 -8.93199 -8.35015 -6.00028 -4.02772 -0.13549 0.76319 1.06887 1.28957 1.85821 2.63721 2.64288 2.81543 3.33268 3.38008 3.39993 3.87931 4.09984 4.45597 4.67249 4.75862 4.79907 5.09309 5.15843 5.19895 5.20571 5.27430 5.35758 5.42364 5.64120 5.70062 5.82369 5.94711 6.02691 6.31627 6.65109 6.80367 7.08300 7.22619 7.66658 7.80412 7.92424 7.99690 8.41344 9.04428 9.61404 11.11230 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.033412 B = 0.002317 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.826797 B =12080.315841 C =12385.597727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.065 3.935 3 C -0.252 4.252 4 S 0.179 5.821 5 C 0.134 3.866 6 C 0.226 3.774 7 N -0.340 5.340 8 O 0.092 5.908 9 C 0.210 3.790 10 C -0.032 4.032 11 C -0.117 4.117 12 C -0.108 4.108 13 C 0.020 3.980 14 C -0.522 4.522 15 H 0.055 0.945 16 C 0.056 3.944 17 N -0.896 5.896 18 Si 0.892 3.108 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 N -0.473 5.473 23 N -0.435 5.435 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.186 0.814 28 H 0.112 0.888 29 H 0.106 0.894 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.016 0.984 35 H 0.016 0.984 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.322 11.288 -13.047 25.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.069 4.069 3 C -0.393 4.393 4 S 0.432 5.568 5 C -0.142 4.142 6 C -0.047 4.047 7 N -0.045 5.045 8 O 0.027 5.973 9 C -0.010 4.010 10 C -0.071 4.071 11 C -0.156 4.156 12 C -0.146 4.146 13 C -0.017 4.017 14 C -0.560 4.560 15 H 0.073 0.927 16 C -0.145 4.145 17 N -0.535 5.535 18 Si 0.720 3.280 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.202 1.202 22 N -0.207 5.207 23 N -0.153 5.153 24 H 0.096 0.904 25 H 0.097 0.903 26 H 0.096 0.904 27 H 0.203 0.797 28 H 0.131 0.869 29 H 0.124 0.876 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.034 0.966 35 H 0.035 0.965 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -19.356 11.504 -12.856 25.928 hybrid contribution 0.204 -0.299 0.177 0.403 sum -19.152 11.204 -12.680 25.556 Atomic orbital electron populations 1.20422 0.86593 1.03695 1.03224 1.20193 0.98641 0.85879 1.02213 1.27187 0.95947 1.04184 1.11933 1.85252 1.05003 1.00284 1.66223 1.23419 0.90492 0.93375 1.06939 1.22180 0.88345 0.89516 1.04651 1.75125 1.06495 1.04702 1.18175 1.85364 1.11100 1.35978 1.64861 1.29150 0.95194 0.83392 0.93234 1.20643 0.80408 1.04027 1.02003 1.21769 0.99367 1.02653 0.91780 1.21634 0.91369 0.99929 1.01661 1.19100 0.95769 0.97192 0.89677 1.21218 0.96786 1.45776 0.92233 0.92668 1.25037 0.98163 0.95618 0.95718 1.69952 1.36800 1.49456 0.97280 0.86658 0.85205 0.79206 0.76924 1.20246 1.21345 1.20232 1.72029 1.05673 1.21661 1.21324 1.66222 1.03575 1.31508 1.13965 0.90418 0.90316 0.90403 0.79705 0.86940 0.87609 0.91488 0.91373 0.92818 0.92860 0.96569 0.96545 0.92941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.53 10.28 36.01 0.37 -0.16 16 2 C 0.06 0.66 6.69 -84.42 -0.56 0.09 16 3 C -0.25 -2.08 11.09 29.21 0.32 -1.75 16 4 S 0.18 1.83 23.43 -107.50 -2.52 -0.68 16 5 C 0.13 1.83 7.54 -14.27 -0.11 1.72 16 6 C 0.23 3.41 8.12 -156.09 -1.27 2.14 16 7 N -0.34 -5.31 12.21 30.97 0.38 -4.93 16 8 O 0.09 1.29 11.29 18.00 0.20 1.49 16 9 C 0.21 2.76 7.75 -12.98 -0.10 2.66 16 10 C -0.03 -0.36 5.84 -27.88 -0.16 -0.52 16 11 C -0.12 -1.73 5.20 -26.73 -0.14 -1.87 16 12 C -0.11 -1.98 5.15 -26.73 -0.14 -2.12 16 13 C 0.02 0.49 4.97 -27.88 -0.14 0.35 16 14 C -0.52 -14.41 9.11 -34.44 -0.31 -14.72 16 15 H 0.06 1.46 7.74 -52.49 -0.41 1.06 16 16 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 17 N -0.90 -26.76 13.29 55.43 0.74 -26.02 16 18 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 N -0.47 -6.88 11.58 -9.89 -0.11 -6.99 16 23 N -0.44 -5.88 10.54 -7.53 -0.08 -5.96 16 24 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.08 0.34 8.11 -51.93 -0.42 -0.08 16 27 H 0.19 0.86 8.06 -52.49 -0.42 0.44 16 28 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 334.05 15.07 5.03 5.03 Total: -1.00 -32.60 334.05 -8.33 -40.93 By element: Atomic # 1 Polarization: -1.92 SS G_CDS: -4.61 Total: -6.53 kcal Atomic # 6 Polarization: -10.36 SS G_CDS: -2.34 Total: -12.70 kcal Atomic # 7 Polarization: -44.83 SS G_CDS: 0.92 Total: -43.91 kcal Atomic # 8 Polarization: 1.29 SS G_CDS: 0.20 Total: 1.49 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: 1.83 SS G_CDS: -2.52 Total: -0.68 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.60 -8.33 -40.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350043596.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.880 kcal (2) G-P(sol) polarization free energy of solvation -32.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds