Wall clock time and date at job start Tue Mar 31 2020 06:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33893 * 122.08377 * 2 1 4 4 S 1.76257 * 108.18061 * 179.97438 * 3 2 1 5 5 C 1.76177 * 89.82273 * 0.02562 * 4 3 2 6 6 C 1.47945 * 125.46808 * 179.97438 * 5 4 3 7 7 N 1.30928 * 126.43289 * 180.02562 * 6 5 4 8 8 O 1.21296 * 110.06175 * 180.02562 * 7 6 5 9 9 C 1.33682 * 110.06136 * 0.02562 * 8 7 6 10 10 C 1.50706 * 126.41510 * 179.97438 * 9 8 7 11 11 C 1.52999 * 109.46953 * 270.02988 * 10 9 8 12 12 C 1.53006 * 109.46623 * 179.97438 * 11 10 9 13 13 C 1.52999 * 109.46626 * 179.97438 * 12 11 10 14 14 C 1.50706 * 109.46957 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99816 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00340 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99773 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00296 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47086 * 59.99480 * 18 16 14 20 20 H 1.48494 * 109.47288 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46879 * 299.99424 * 18 16 14 22 22 N 1.30938 * 107.16924 * 0.26470 * 9 8 7 23 23 N 1.30197 * 109.06625 * 0.25881 * 5 4 3 24 24 H 1.08999 * 109.47331 * 89.99338 * 1 2 3 25 25 H 1.08994 * 109.47196 * 209.99752 * 1 2 3 26 26 H 1.09000 * 109.47166 * 329.99744 * 1 2 3 27 27 H 1.08002 * 125.91262 * 0.02676 * 3 2 1 28 28 H 1.09000 * 109.46974 * 150.02736 * 10 9 8 29 29 H 1.09001 * 109.46547 * 30.02826 * 10 9 8 30 30 H 1.09000 * 109.47486 * 60.00062 * 11 10 9 31 31 H 1.09001 * 109.47362 * 299.99339 * 11 10 9 32 32 H 1.08993 * 109.46955 * 300.00075 * 12 11 10 33 33 H 1.09000 * 109.47050 * 59.99904 * 12 11 10 34 34 H 1.08993 * 109.47839 * 299.99931 * 13 12 11 35 35 H 1.09000 * 109.47160 * 60.00369 * 13 12 11 36 36 H 0.97000 * 120.00540 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2182 1.1344 0.0000 4 16 3.9291 0.7109 0.0007 5 6 3.5005 -0.9979 0.0002 6 6 4.4604 -2.1237 -0.0001 7 7 4.1633 -3.3988 -0.0010 8 8 5.1785 -4.0626 -0.0005 9 6 6.2495 -3.2625 0.0014 10 6 7.6921 -3.6987 0.0031 11 6 8.1780 -3.8478 1.4462 12 6 9.6424 -4.2912 1.4478 13 6 10.1286 -4.4397 2.8909 14 6 11.5711 -4.8759 2.8926 15 1 12.0894 -5.0312 1.9579 16 6 12.2293 -5.0766 4.0874 17 7 11.5983 -4.8870 5.2256 18 14 14.0176 -5.6166 4.0895 19 1 14.8430 -4.5981 3.3919 20 1 14.4895 -5.7608 5.4901 21 1 14.1420 -6.9196 3.3882 22 7 5.8104 -2.0290 0.0078 23 7 2.2035 -1.1111 -0.0060 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.8136 2.1358 0.0004 28 1 8.2982 -2.9515 -0.5091 29 1 7.7829 -4.6553 -0.5116 30 1 7.5719 -4.5950 1.9584 31 1 8.0872 -2.8912 1.9608 32 1 9.7329 -5.2478 0.9333 33 1 10.2488 -3.5443 0.9355 34 1 10.0382 -3.4829 3.4051 35 1 9.5223 -5.1864 3.4036 36 1 12.0614 -5.0278 6.0662 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000350043596.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:16 Heat of formation + Delta-G solvation = 69.422458 kcal Electronic energy + Delta-G solvation = -19354.134909 eV Core-core repulsion = 16160.057287 eV Total energy + Delta-G solvation = -3194.077622 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -46.82166 -40.92503 -37.55486 -36.90373 -35.22164 -33.88350 -32.70512 -30.94747 -28.73650 -27.59786 -27.47449 -25.05547 -24.05259 -22.63573 -21.77281 -20.29612 -19.51030 -19.34279 -18.38169 -18.25460 -17.10284 -16.54577 -16.36142 -16.09082 -15.69624 -14.99550 -14.62823 -14.49267 -14.26541 -13.83982 -13.71451 -13.66385 -13.49888 -13.38677 -12.88659 -12.78341 -12.48643 -12.40010 -12.31798 -12.18038 -12.10851 -11.58973 -11.32621 -11.24176 -11.04489 -10.96696 -10.60816 -10.50210 -9.73594 -8.15769 -6.26461 -1.00322 -0.05474 0.05038 0.53970 0.91031 1.43456 1.46312 1.53917 1.64337 1.74827 1.89865 2.44653 2.87082 3.17792 3.26642 3.80364 4.04016 4.10436 4.11386 4.14212 4.21919 4.52162 4.63736 4.71629 4.75735 4.79254 4.82829 4.83360 4.92771 5.19050 5.26312 5.35169 5.36541 5.60758 5.84248 5.93547 6.29906 6.43871 6.88514 6.92613 7.43000 8.95892 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.033412 B = 0.002317 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.826797 B =12080.315841 C =12385.597727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.039 3.961 3 C -0.221 4.221 4 S 0.198 5.802 5 C 0.085 3.915 6 C 0.221 3.779 7 N -0.367 5.367 8 O 0.091 5.909 9 C 0.215 3.785 10 C -0.020 4.020 11 C -0.108 4.108 12 C -0.095 4.095 13 C 0.017 3.983 14 C -0.539 4.539 15 H 0.066 0.934 16 C -0.006 4.006 17 N -0.937 5.937 18 Si 0.964 3.036 19 H -0.266 1.266 20 H -0.288 1.288 21 H -0.265 1.265 22 N -0.486 5.486 23 N -0.460 5.460 24 H 0.088 0.912 25 H 0.066 0.934 26 H 0.106 0.894 27 H 0.228 0.772 28 H 0.132 0.868 29 H 0.137 0.863 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.068 0.932 33 H 0.064 0.936 34 H -0.013 1.013 35 H -0.011 1.011 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.223 12.450 -14.653 27.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.094 4.094 3 C -0.361 4.361 4 S 0.450 5.550 5 C -0.189 4.189 6 C -0.052 4.052 7 N -0.074 5.074 8 O 0.027 5.973 9 C -0.005 4.005 10 C -0.058 4.058 11 C -0.147 4.147 12 C -0.133 4.133 13 C -0.020 4.020 14 C -0.577 4.577 15 H 0.085 0.915 16 C -0.203 4.203 17 N -0.578 5.578 18 Si 0.789 3.211 19 H -0.191 1.191 20 H -0.214 1.214 21 H -0.190 1.190 22 N -0.220 5.220 23 N -0.179 5.179 24 H 0.106 0.894 25 H 0.085 0.915 26 H 0.125 0.875 27 H 0.245 0.755 28 H 0.150 0.850 29 H 0.155 0.845 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.005 0.995 35 H 0.007 0.993 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -19.250 12.650 -14.485 27.210 hybrid contribution 0.093 -0.547 0.703 0.895 sum -19.157 12.103 -13.782 26.522 Atomic orbital electron populations 1.20534 0.84345 1.04552 1.04189 1.20752 1.00133 0.85602 1.02963 1.27727 0.94461 1.05523 1.08412 1.85113 1.06599 0.97988 1.65252 1.23499 0.90724 0.94537 1.10176 1.22567 0.88856 0.89877 1.03852 1.75090 1.07251 1.05313 1.19741 1.85328 1.11100 1.35882 1.64950 1.29469 0.95577 0.83087 0.92338 1.20642 0.79177 1.06396 0.99626 1.21542 0.97236 1.01591 0.94321 1.21414 0.93390 1.01270 0.97184 1.19066 0.94801 0.94587 0.93512 1.21753 0.98140 1.45138 0.92709 0.91542 1.26028 1.03133 0.95770 0.95392 1.70104 1.38842 1.50872 0.97976 0.85512 0.79340 0.79295 0.76974 1.19057 1.21374 1.18991 1.72025 1.05662 1.22360 1.21979 1.66220 1.03990 1.33733 1.13934 0.89361 0.91484 0.87525 0.75536 0.84988 0.84504 0.92080 0.92764 0.91305 0.91756 0.99501 0.99261 0.92978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.88 10.28 71.24 0.73 -0.14 16 2 C 0.04 0.73 6.69 41.67 0.28 1.01 16 3 C -0.22 -3.05 11.09 66.83 0.74 -2.30 16 4 S 0.20 3.83 23.43 -56.49 -1.32 2.51 16 5 C 0.08 2.34 7.54 87.51 0.66 3.00 16 6 C 0.22 6.82 8.12 137.07 1.11 7.94 16 7 N -0.37 -11.80 12.21 -58.94 -0.72 -12.52 16 8 O 0.09 2.57 11.29 74.48 0.84 3.41 16 9 C 0.22 5.53 7.75 88.36 0.68 6.21 16 10 C -0.02 -0.41 5.84 29.85 0.17 -0.23 16 11 C -0.11 -3.13 5.20 30.60 0.16 -2.98 16 12 C -0.10 -3.39 5.15 30.60 0.16 -3.23 16 13 C 0.02 0.89 4.97 29.85 0.15 1.04 16 14 C -0.54 -29.84 9.11 25.60 0.23 -29.61 16 15 H 0.07 3.44 7.74 -2.91 -0.02 3.42 16 16 C -0.01 -0.35 5.46 84.65 0.46 0.12 16 17 N -0.94 -57.28 13.29 21.45 0.28 -57.00 16 18 Si 0.96 43.71 29.54 68.60 2.03 45.74 16 19 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 20 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 21 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 22 N -0.49 -14.14 11.58 -302.40 -3.50 -17.64 16 23 N -0.46 -12.48 10.54 -177.73 -1.87 -14.36 16 24 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.11 0.57 8.11 -2.39 -0.02 0.55 16 27 H 0.23 1.04 8.06 -2.91 -0.02 1.02 16 28 H 0.13 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.14 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.06 1.83 8.14 -2.39 -0.02 1.82 16 31 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.06 2.15 8.14 -2.39 -0.02 2.14 16 34 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 35 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 36 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 Total: -1.00 -73.45 334.05 2.37 -71.08 By element: Atomic # 1 Polarization: -3.13 SS G_CDS: 1.09 Total: -2.04 kcal Atomic # 6 Polarization: -24.73 SS G_CDS: 5.54 Total: -19.18 kcal Atomic # 7 Polarization: -95.70 SS G_CDS: -5.81 Total: -101.51 kcal Atomic # 8 Polarization: 2.57 SS G_CDS: 0.84 Total: 3.41 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Atomic # 16 Polarization: 3.83 SS G_CDS: -1.32 Total: 2.51 kcal Total: -73.45 2.37 -71.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350043596.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.502 kcal (2) G-P(sol) polarization free energy of solvation -73.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds