Wall clock time and date at job start Tue Mar 31 2020 06:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86804 * 120.00063 * 2 1 4 4 H 1.48508 * 109.47003 * 270.00389 * 3 2 1 5 5 H 1.48496 * 109.47193 * 30.00236 * 3 2 1 6 6 H 1.48501 * 109.46932 * 150.00271 * 3 2 1 7 7 C 1.37878 * 119.99960 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99840 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99893 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47002 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.46966 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46966 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.47002 * 180.02562 * 12 11 10 14 14 N 1.31134 * 126.55091 * 90.00007 * 13 12 11 15 15 C 1.34496 * 105.61063 * 180.02562 * 14 13 12 16 16 C 1.50701 * 126.28314 * 179.97438 * 15 14 13 17 17 C 1.50703 * 109.47064 * 90.00215 * 16 15 14 18 18 C 1.33634 * 126.03727 * 90.00060 * 17 16 15 19 19 N 1.31789 * 114.50028 * 180.02562 * 18 17 16 20 20 C 1.29024 * 117.12247 * 359.97438 * 19 18 17 21 21 S 1.70977 * 110.16706 * 359.72794 * 20 19 18 22 22 N 1.29946 * 107.42657 * 0.24252 * 15 14 13 23 23 O 1.21303 * 110.24921 * 359.57805 * 22 15 14 24 24 H 0.97000 * 119.99822 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.47352 * 60.00030 * 9 7 2 26 26 H 1.09002 * 109.47327 * 300.00101 * 9 7 2 27 27 H 1.08997 * 109.47171 * 59.99762 * 10 9 7 28 28 H 1.09002 * 109.47033 * 300.00123 * 10 9 7 29 29 H 1.08996 * 109.46943 * 60.00267 * 11 10 9 30 30 H 1.08993 * 109.47134 * 299.99872 * 11 10 9 31 31 H 1.08997 * 109.47171 * 59.99799 * 12 11 10 32 32 H 1.09002 * 109.47033 * 300.00160 * 12 11 10 33 33 H 1.09002 * 109.47060 * 210.00179 * 16 15 14 34 34 H 1.09001 * 109.47380 * 330.00266 * 16 15 14 35 35 H 1.08000 * 122.75328 * 359.97438 * 18 17 16 36 36 H 1.07996 * 124.91558 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4002 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4802 -4.9871 0.0001 12 6 2.4744 -6.1500 -0.0005 13 6 1.7209 -7.4551 -0.0005 14 7 1.3300 -8.1312 -1.0540 15 6 0.7016 -9.2188 -0.5733 16 6 0.0670 -10.3156 -1.3891 17 6 1.0856 -11.3923 -1.6619 18 6 1.3246 -12.4607 -0.8956 19 7 2.2690 -13.2593 -1.3506 20 6 2.8395 -12.9243 -2.4583 21 16 2.1662 -11.4689 -3.0514 22 7 0.7371 -9.1474 0.7237 23 8 1.3229 -8.1443 1.0730 24 1 -0.4850 0.8401 0.0004 25 1 0.6240 -2.5567 -0.8902 26 1 0.6247 -2.5571 0.8897 27 1 2.8719 -3.6043 0.8894 28 1 2.8719 -3.6043 -0.8905 29 1 0.8533 -5.0451 -0.8896 30 1 0.8539 -5.0446 0.8903 31 1 3.1018 -6.0922 0.8889 32 1 3.1005 -6.0923 -0.8910 33 1 -0.7716 -10.7402 -0.8372 34 1 -0.2900 -9.9055 -2.3338 35 1 0.7884 -12.6534 0.0219 36 1 3.6250 -13.4847 -2.9433 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000350307090.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:33 Heat of formation + Delta-G solvation = 88.340380 kcal Electronic energy + Delta-G solvation = -19457.483948 eV Core-core repulsion = 16264.226668 eV Total energy + Delta-G solvation = -3193.257280 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -45.65696 -40.01069 -36.45789 -35.88869 -33.87245 -32.76429 -31.66191 -29.42239 -28.15017 -25.82428 -25.18075 -23.69447 -22.61091 -21.17847 -20.47543 -20.20514 -18.56644 -18.01089 -17.47181 -16.23520 -15.95995 -15.40148 -15.19987 -14.77970 -14.43317 -14.31736 -14.00773 -13.79608 -13.16853 -13.02879 -12.89295 -12.24411 -12.10581 -11.74599 -11.60176 -11.54992 -11.13059 -11.03750 -10.68425 -10.60888 -10.56584 -10.11204 -9.97215 -9.73639 -9.69428 -9.36761 -9.33219 -9.06786 -8.36086 -6.01087 -4.03666 0.24483 0.93313 1.09309 1.35950 2.09404 2.43635 2.78197 3.31223 3.37671 3.40608 3.49247 3.85815 3.95155 4.40560 4.44821 4.64391 4.84562 4.92588 5.04343 5.13091 5.19294 5.34763 5.36670 5.47393 5.72528 5.75896 5.82820 5.98195 6.03750 6.31823 6.65086 6.80224 7.07828 7.28364 7.65979 7.79573 7.98807 8.07052 8.40665 9.03717 9.60607 11.10227 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.037986 B = 0.002260 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.937695 B =12384.297923 C =12628.443832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.055 0.945 9 C 0.020 3.980 10 C -0.108 4.108 11 C -0.115 4.115 12 C -0.032 4.032 13 C 0.202 3.798 14 N -0.483 5.483 15 C 0.166 3.834 16 C 0.054 3.946 17 C -0.224 4.224 18 C 0.046 3.954 19 N -0.473 5.473 20 C 0.013 3.987 21 S 0.152 5.848 22 N -0.382 5.382 23 O 0.077 5.923 24 H 0.260 0.740 25 H 0.016 0.984 26 H 0.016 0.984 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.102 0.898 32 H 0.109 0.891 33 H 0.114 0.886 34 H 0.111 0.889 35 H 0.177 0.823 36 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.377 -24.798 -4.749 25.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.559 4.559 8 H 0.074 0.926 9 C -0.017 4.017 10 C -0.146 4.146 11 C -0.154 4.154 12 C -0.071 4.071 13 C -0.018 4.018 14 N -0.216 5.216 15 C -0.107 4.107 16 C 0.013 3.987 17 C -0.346 4.346 18 C -0.106 4.106 19 N -0.186 5.186 20 C -0.284 4.284 21 S 0.405 5.595 22 N -0.090 5.090 23 O 0.019 5.981 24 H 0.070 0.930 25 H 0.034 0.966 26 H 0.034 0.966 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.120 0.880 32 H 0.128 0.872 33 H 0.132 0.868 34 H 0.129 0.871 35 H 0.194 0.806 36 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 3.207 -25.300 -5.295 26.046 hybrid contribution 0.086 0.860 0.822 1.193 sum 3.293 -24.439 -4.474 25.063 Atomic orbital electron populations 1.69966 1.06073 1.26607 1.50854 1.25039 0.94849 0.99300 0.95358 0.86600 0.79842 0.83493 0.78095 1.20673 1.21258 1.19864 1.21256 0.93044 0.91074 1.50557 0.92630 1.19101 0.94022 0.91295 0.97311 1.21635 0.99180 0.93036 1.00761 1.21738 0.97496 0.93316 1.02825 1.20565 0.97207 0.83427 1.05863 1.29171 0.95278 0.97261 0.80073 1.71910 1.15768 1.04975 1.28970 1.25459 1.00337 0.96411 0.88523 1.18149 0.93710 0.87146 0.99737 1.25668 1.06064 1.02496 1.00415 1.21838 0.96584 0.90805 1.01328 1.66371 1.08972 1.31290 1.11940 1.28487 1.04470 0.99068 0.96345 1.84258 1.30003 1.22257 1.23012 1.74600 1.15197 1.03786 1.15400 1.85301 1.51801 1.25050 1.35973 0.93002 0.96574 0.96568 0.92892 0.92900 0.91455 0.91625 0.88013 0.87232 0.86825 0.87117 0.80614 0.78310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.73 13.29 55.43 0.74 -25.99 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.52 -14.42 9.11 -34.44 -0.31 -14.74 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.02 0.49 4.97 -27.88 -0.14 0.35 16 10 C -0.11 -2.01 5.15 -26.73 -0.14 -2.15 16 11 C -0.12 -1.73 5.20 -26.73 -0.14 -1.87 16 12 C -0.03 -0.37 5.84 -27.88 -0.16 -0.53 16 13 C 0.20 2.66 7.77 -13.06 -0.10 2.56 16 14 N -0.48 -6.65 11.55 -9.87 -0.11 -6.76 16 15 C 0.17 2.10 7.45 -156.37 -1.17 0.93 16 16 C 0.05 0.48 6.38 -29.03 -0.19 0.30 16 17 C -0.22 -2.09 5.83 -35.92 -0.21 -2.30 16 18 C 0.05 0.45 11.25 -19.18 -0.22 0.24 16 19 N -0.47 -4.93 10.54 -15.75 -0.17 -5.10 16 20 C 0.01 0.11 12.23 51.58 0.63 0.74 16 21 S 0.15 1.23 23.22 -107.50 -2.50 -1.27 16 22 N -0.38 -5.26 12.16 30.90 0.38 -4.89 16 23 O 0.08 1.07 11.31 18.11 0.20 1.27 16 24 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 25 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.11 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.11 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.18 1.47 8.06 -52.49 -0.42 1.05 16 36 H 0.20 0.91 8.06 -52.49 -0.42 0.49 16 LS Contribution 333.15 15.07 5.02 5.02 Total: -1.00 -32.68 333.15 -8.31 -40.99 By element: Atomic # 1 Polarization: -0.02 SS G_CDS: -4.61 Total: -4.63 kcal Atomic # 6 Polarization: -12.76 SS G_CDS: -2.24 Total: -14.99 kcal Atomic # 7 Polarization: -43.57 SS G_CDS: 0.83 Total: -42.74 kcal Atomic # 8 Polarization: 1.07 SS G_CDS: 0.20 Total: 1.27 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: 1.23 SS G_CDS: -2.50 Total: -1.27 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.68 -8.31 -40.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350307090.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.326 kcal (2) G-P(sol) polarization free energy of solvation -32.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds