Wall clock time and date at job start Tue Mar 31 2020 06:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86804 * 120.00063 * 2 1 4 4 H 1.48508 * 109.47003 * 270.00389 * 3 2 1 5 5 H 1.48496 * 109.47193 * 30.00236 * 3 2 1 6 6 H 1.48501 * 109.46932 * 150.00271 * 3 2 1 7 7 C 1.37878 * 119.99960 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99840 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99893 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47002 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.46966 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46966 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.47002 * 180.02562 * 12 11 10 14 14 N 1.31134 * 126.55091 * 90.00007 * 13 12 11 15 15 C 1.34496 * 105.61063 * 180.02562 * 14 13 12 16 16 C 1.50701 * 126.28314 * 179.97438 * 15 14 13 17 17 C 1.50703 * 109.47064 * 90.00215 * 16 15 14 18 18 C 1.33634 * 126.03727 * 90.00060 * 17 16 15 19 19 N 1.31789 * 114.50028 * 180.02562 * 18 17 16 20 20 C 1.29024 * 117.12247 * 359.97438 * 19 18 17 21 21 S 1.70977 * 110.16706 * 359.72794 * 20 19 18 22 22 N 1.29946 * 107.42657 * 0.24252 * 15 14 13 23 23 O 1.21303 * 110.24921 * 359.57805 * 22 15 14 24 24 H 0.97000 * 119.99822 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.47352 * 60.00030 * 9 7 2 26 26 H 1.09002 * 109.47327 * 300.00101 * 9 7 2 27 27 H 1.08997 * 109.47171 * 59.99762 * 10 9 7 28 28 H 1.09002 * 109.47033 * 300.00123 * 10 9 7 29 29 H 1.08996 * 109.46943 * 60.00267 * 11 10 9 30 30 H 1.08993 * 109.47134 * 299.99872 * 11 10 9 31 31 H 1.08997 * 109.47171 * 59.99799 * 12 11 10 32 32 H 1.09002 * 109.47033 * 300.00160 * 12 11 10 33 33 H 1.09002 * 109.47060 * 210.00179 * 16 15 14 34 34 H 1.09001 * 109.47380 * 330.00266 * 16 15 14 35 35 H 1.08000 * 122.75328 * 359.97438 * 18 17 16 36 36 H 1.07996 * 124.91558 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4002 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4802 -4.9871 0.0001 12 6 2.4744 -6.1500 -0.0005 13 6 1.7209 -7.4551 -0.0005 14 7 1.3300 -8.1312 -1.0540 15 6 0.7016 -9.2188 -0.5733 16 6 0.0670 -10.3156 -1.3891 17 6 1.0856 -11.3923 -1.6619 18 6 1.3246 -12.4607 -0.8956 19 7 2.2690 -13.2593 -1.3506 20 6 2.8395 -12.9243 -2.4583 21 16 2.1662 -11.4689 -3.0514 22 7 0.7371 -9.1474 0.7237 23 8 1.3229 -8.1443 1.0730 24 1 -0.4850 0.8401 0.0004 25 1 0.6240 -2.5567 -0.8902 26 1 0.6247 -2.5571 0.8897 27 1 2.8719 -3.6043 0.8894 28 1 2.8719 -3.6043 -0.8905 29 1 0.8533 -5.0451 -0.8896 30 1 0.8539 -5.0446 0.8903 31 1 3.1018 -6.0922 0.8889 32 1 3.1005 -6.0923 -0.8910 33 1 -0.7716 -10.7402 -0.8372 34 1 -0.2900 -9.9055 -2.3338 35 1 0.7884 -12.6534 0.0219 36 1 3.6250 -13.4847 -2.9433 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000350307090.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:33 Heat of formation + Delta-G solvation = 67.369869 kcal Electronic energy + Delta-G solvation = -19458.393298 eV Core-core repulsion = 16264.226668 eV Total energy + Delta-G solvation = -3194.166629 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -46.66076 -40.68539 -37.50667 -37.10218 -35.33430 -34.17437 -32.85150 -30.91669 -28.87104 -27.48960 -25.90934 -24.91079 -23.98413 -22.25303 -21.77671 -21.14139 -19.35681 -18.94399 -18.46493 -18.34381 -16.65435 -16.54771 -16.36365 -16.21833 -15.69412 -14.94832 -14.84227 -14.64536 -14.53441 -14.21939 -13.89593 -13.69497 -13.52017 -13.37101 -12.81556 -12.62270 -12.35384 -12.31418 -12.20066 -12.16269 -12.02859 -11.38779 -11.34772 -11.19635 -10.83270 -10.67900 -10.51699 -10.37742 -10.01367 -8.16832 -6.27438 -0.41022 0.07094 0.32377 0.71797 1.12746 1.42984 1.43941 1.54974 1.73610 1.79984 2.43815 2.61587 2.96535 3.16835 3.36282 3.72866 3.82826 4.04602 4.05715 4.14673 4.29164 4.32050 4.50642 4.62398 4.71837 4.75520 4.81473 4.90253 4.91621 5.08284 5.18513 5.33604 5.34776 5.59528 5.82666 5.92188 6.29038 6.63193 6.91504 7.07260 7.42081 8.95028 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.037986 B = 0.002260 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.937695 B =12384.297923 C =12628.443832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.005 4.005 3 Si 0.964 3.036 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.260 1.260 7 C -0.539 4.539 8 H 0.065 0.935 9 C 0.018 3.982 10 C -0.096 4.096 11 C -0.105 4.105 12 C -0.021 4.021 13 C 0.201 3.799 14 N -0.499 5.499 15 C 0.169 3.831 16 C 0.054 3.946 17 C -0.236 4.236 18 C 0.038 3.962 19 N -0.504 5.504 20 C 0.020 3.980 21 S 0.165 5.835 22 N -0.399 5.399 23 O 0.067 5.933 24 H 0.262 0.738 25 H -0.012 1.012 26 H -0.011 1.011 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.128 0.872 32 H 0.126 0.874 33 H 0.131 0.869 34 H 0.122 0.878 35 H 0.182 0.818 36 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.101 -25.261 -5.251 26.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.202 4.202 3 Si 0.789 3.211 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.184 1.184 7 C -0.577 4.577 8 H 0.083 0.917 9 C -0.019 4.019 10 C -0.133 4.133 11 C -0.143 4.143 12 C -0.059 4.059 13 C -0.018 4.018 14 N -0.233 5.233 15 C -0.105 4.105 16 C 0.013 3.987 17 C -0.359 4.359 18 C -0.114 4.114 19 N -0.218 5.218 20 C -0.277 4.277 21 S 0.418 5.582 22 N -0.109 5.109 23 O 0.011 5.989 24 H 0.071 0.929 25 H 0.006 0.994 26 H 0.008 0.992 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.146 0.854 32 H 0.144 0.856 33 H 0.149 0.851 34 H 0.141 0.859 35 H 0.199 0.801 36 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 4.950 -25.764 -5.793 26.867 hybrid contribution -0.470 0.963 0.938 1.423 sum 4.480 -24.801 -4.856 25.666 Atomic orbital electron populations 1.70110 1.07894 1.27632 1.52095 1.26018 0.95741 1.03496 0.94990 0.85462 0.78753 0.78500 0.78422 1.19884 1.21135 1.18435 1.21772 0.93773 0.92332 1.49865 0.91670 1.19059 0.94698 0.93485 0.94634 1.21418 0.97918 0.92151 1.01833 1.21500 0.97714 0.93107 1.02023 1.20504 0.96228 0.81205 1.08011 1.29373 0.94997 0.97522 0.79948 1.71931 1.16329 1.05618 1.29427 1.26042 0.99437 0.96589 0.88445 1.18339 0.93983 0.86313 1.00073 1.25692 1.06628 1.02486 1.01070 1.22011 0.96693 0.91010 1.01701 1.66409 1.09964 1.32215 1.13229 1.29045 1.04210 0.98902 0.95502 1.84203 1.29491 1.22147 1.22350 1.74596 1.16005 1.04157 1.16117 1.85280 1.52077 1.25268 1.36247 0.92944 0.99404 0.99223 0.91588 0.91911 0.92697 0.92202 0.85424 0.85630 0.85085 0.85945 0.80110 0.75300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.98 13.29 21.45 0.28 -56.70 16 2 C -0.01 -0.30 5.46 84.65 0.46 0.16 16 3 Si 0.96 43.64 29.54 68.60 2.03 45.66 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 5 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 6 H -0.26 -11.12 7.11 99.48 0.71 -10.42 16 7 C -0.54 -29.88 9.11 25.60 0.23 -29.65 16 8 H 0.07 3.40 7.74 -2.91 -0.02 3.38 16 9 C 0.02 0.93 4.97 29.85 0.15 1.08 16 10 C -0.10 -3.45 5.15 30.60 0.16 -3.29 16 11 C -0.10 -3.06 5.20 30.60 0.16 -2.90 16 12 C -0.02 -0.44 5.84 29.85 0.17 -0.27 16 13 C 0.20 5.03 7.77 88.38 0.69 5.72 16 14 N -0.50 -13.17 11.55 -303.20 -3.50 -16.67 16 15 C 0.17 4.09 7.45 138.46 1.03 5.12 16 16 C 0.05 0.91 6.38 29.10 0.19 1.09 16 17 C -0.24 -4.13 5.83 24.64 0.14 -3.99 16 18 C 0.04 0.71 11.25 83.65 0.94 1.65 16 19 N -0.50 -9.97 10.54 -203.75 -2.15 -12.12 16 20 C 0.02 0.28 12.23 130.65 1.60 1.88 16 21 S 0.16 2.42 23.22 -56.49 -1.31 1.10 16 22 N -0.40 -10.72 12.16 -60.32 -0.73 -11.45 16 23 O 0.07 1.80 11.31 74.88 0.85 2.65 16 24 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 25 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 26 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 27 H 0.07 2.21 8.14 -2.39 -0.02 2.20 16 28 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.13 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.13 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.13 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.18 2.97 8.06 -2.91 -0.02 2.94 16 36 H 0.23 1.51 8.06 -2.91 -0.02 1.49 16 Total: -1.00 -70.82 333.15 2.47 -68.35 By element: Atomic # 1 Polarization: 1.49 SS G_CDS: 1.09 Total: 2.57 kcal Atomic # 6 Polarization: -29.32 SS G_CDS: 5.92 Total: -23.40 kcal Atomic # 7 Polarization: -90.84 SS G_CDS: -6.10 Total: -96.94 kcal Atomic # 8 Polarization: 1.80 SS G_CDS: 0.85 Total: 2.65 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.66 kcal Atomic # 16 Polarization: 2.42 SS G_CDS: -1.31 Total: 1.10 kcal Total: -70.82 2.47 -68.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350307090.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.718 kcal (2) G-P(sol) polarization free energy of solvation -70.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds