Wall clock time and date at job start Tue Mar 31 2020 06:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33889 * 125.91371 * 2 1 4 4 N 1.31132 * 115.83506 * 179.97438 * 3 2 1 5 5 C 1.30191 * 117.09958 * 0.02562 * 4 3 2 6 6 C 1.47944 * 125.46796 * 180.02562 * 5 4 3 7 7 N 1.30929 * 126.43347 * 180.02562 * 6 5 4 8 8 O 1.21292 * 110.06026 * 179.72381 * 7 6 5 9 9 C 1.33681 * 110.06359 * 0.39929 * 8 7 6 10 10 C 1.50706 * 126.41623 * 179.86151 * 9 8 7 11 11 C 1.52999 * 109.46953 * 269.69426 * 10 9 8 12 12 C 1.53006 * 109.46623 * 179.97438 * 11 10 9 13 13 C 1.52999 * 109.46626 * 179.97438 * 12 11 10 14 14 C 1.50706 * 109.46957 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99816 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00340 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99773 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00296 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.46692 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47025 * 119.99570 * 18 16 14 21 21 H 1.48492 * 109.46854 * 239.99727 * 18 16 14 22 22 N 1.30935 * 107.16551 * 359.60341 * 9 8 7 23 23 S 1.76179 * 109.06507 * 0.26469 * 5 4 3 24 24 H 1.09002 * 109.46721 * 89.99301 * 1 2 3 25 25 H 1.09000 * 109.47305 * 209.99836 * 1 2 3 26 26 H 1.09002 * 109.46501 * 329.99756 * 1 2 3 27 27 H 1.08006 * 122.08465 * 0.02562 * 3 2 1 28 28 H 1.09000 * 109.46974 * 149.69174 * 10 9 8 29 29 H 1.09001 * 109.46547 * 29.69264 * 10 9 8 30 30 H 1.09000 * 109.47486 * 60.00062 * 11 10 9 31 31 H 1.09001 * 109.47362 * 299.99339 * 11 10 9 32 32 H 1.08993 * 109.46955 * 300.00075 * 12 11 10 33 33 H 1.09000 * 109.47050 * 59.99904 * 12 11 10 34 34 H 1.08993 * 109.47839 * 299.99931 * 13 12 11 35 35 H 1.09000 * 109.47160 * 60.00369 * 13 12 11 36 36 H 0.97000 * 120.00540 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2924 1.0844 0.0000 4 7 3.5834 0.8549 0.0005 5 6 3.9645 -0.3900 0.0005 6 6 5.3680 -0.8581 0.0015 7 7 5.7723 -2.1034 0.0010 8 8 6.9844 -2.1473 -0.0033 9 6 7.4881 -0.9091 0.0028 10 6 8.9487 -0.5374 0.0031 11 6 9.4425 -0.4118 1.4458 12 6 10.9255 -0.0351 1.4461 13 6 11.4192 0.0911 2.8887 14 6 12.8797 0.4628 2.8891 15 1 13.4032 0.5961 1.9539 16 6 13.5476 0.6327 4.0833 17 7 12.9100 0.4708 5.2221 18 14 15.3577 1.0941 4.0837 19 1 15.8376 1.2162 2.6838 20 1 15.5377 2.3910 4.7841 21 1 16.1366 0.0412 4.7836 22 7 6.4750 -0.0797 0.0026 23 16 2.5408 -1.4277 -0.0080 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3632 0.8900 0.5139 27 1 1.8877 2.0858 0.0004 28 1 9.0814 0.4147 -0.5106 29 1 9.5203 -1.3103 -0.5107 30 1 9.3098 -1.3640 1.9595 31 1 8.8709 0.3611 1.9596 32 1 11.4968 -0.8082 0.9324 33 1 11.0586 0.9169 0.9322 34 1 10.8478 0.8644 3.4020 35 1 11.2860 -0.8607 3.4029 36 1 13.3796 0.5907 6.0623 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351146408.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:57 Heat of formation + Delta-G solvation = 90.808880 kcal Electronic energy + Delta-G solvation = -19297.153400 eV Core-core repulsion = 16104.003162 eV Total energy + Delta-G solvation = -3193.150238 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -45.72265 -39.96048 -36.33755 -35.63271 -33.64608 -32.93765 -32.01669 -29.48955 -28.24477 -25.86768 -25.30399 -23.79217 -22.94035 -21.66111 -20.19331 -20.02187 -18.28229 -18.21734 -17.38561 -16.21575 -16.05773 -15.19473 -15.16890 -14.84194 -14.53568 -14.32768 -13.59389 -13.54155 -13.19554 -13.07848 -12.98375 -12.31853 -12.14801 -11.87681 -11.70724 -11.62712 -11.22084 -11.04814 -10.67381 -10.61027 -10.56630 -10.31510 -10.14162 -9.71047 -9.70709 -9.33102 -9.06363 -8.98334 -8.34259 -5.98943 -4.01403 -0.18634 0.66097 1.05243 1.17707 1.92173 2.64862 2.70209 2.92118 3.32039 3.39580 3.43380 3.71254 4.32331 4.46732 4.51216 4.60854 4.74907 4.96273 5.13415 5.19707 5.21312 5.26149 5.36951 5.37243 5.65519 5.69037 5.78193 5.98014 6.05845 6.34648 6.67966 6.83134 7.10655 7.23912 7.68914 7.82421 7.91011 8.01238 8.43020 9.06300 9.62824 11.12426 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.035755 B = 0.002249 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.918171 B =12447.998603 C =12785.291396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.206 4.206 3 C 0.032 3.968 4 N -0.419 5.419 5 C 0.127 3.873 6 C 0.234 3.766 7 N -0.368 5.368 8 O 0.091 5.909 9 C 0.206 3.794 10 C -0.031 4.031 11 C -0.117 4.117 12 C -0.108 4.108 13 C 0.019 3.981 14 C -0.520 4.520 15 H 0.056 0.944 16 C 0.055 3.945 17 N -0.896 5.896 18 Si 0.892 3.108 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 N -0.451 5.451 23 S 0.150 5.850 24 H 0.082 0.918 25 H 0.074 0.926 26 H 0.085 0.915 27 H 0.183 0.817 28 H 0.113 0.887 29 H 0.105 0.895 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.016 0.984 35 H 0.016 0.984 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.284 -3.677 -13.101 27.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.329 4.329 3 C -0.121 4.121 4 N -0.134 5.134 5 C -0.148 4.148 6 C -0.039 4.039 7 N -0.075 5.075 8 O 0.028 5.972 9 C -0.014 4.014 10 C -0.070 4.070 11 C -0.155 4.155 12 C -0.146 4.146 13 C -0.018 4.018 14 C -0.558 4.558 15 H 0.074 0.926 16 C -0.146 4.146 17 N -0.535 5.535 18 Si 0.720 3.280 19 H -0.197 1.197 20 H -0.211 1.211 21 H -0.211 1.211 22 N -0.184 5.184 23 S 0.403 5.597 24 H 0.100 0.900 25 H 0.093 0.907 26 H 0.104 0.896 27 H 0.200 0.800 28 H 0.131 0.869 29 H 0.123 0.877 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.035 0.965 35 H 0.035 0.965 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -24.774 -4.635 -12.931 28.327 hybrid contribution 0.805 1.120 0.214 1.396 sum -23.969 -3.516 -12.717 27.360 Atomic orbital electron populations 1.20313 0.85997 1.03965 1.03400 1.26327 1.02065 0.95147 1.09318 1.21669 0.86227 1.00543 1.03633 1.66355 1.16822 1.18028 1.12210 1.23399 0.92389 0.90861 1.08178 1.22243 0.92411 0.85622 1.03594 1.74972 0.92335 1.19632 1.20586 1.85296 1.13946 1.32831 1.65166 1.29298 1.00000 0.78605 0.93489 1.20636 0.80070 1.04344 1.01992 1.21765 0.99266 1.02703 0.91816 1.21633 0.91107 1.00213 1.01637 1.19111 0.95754 0.97243 0.89710 1.21299 0.95417 1.46822 0.92287 0.92552 1.25043 0.98257 0.95581 0.95726 1.69975 1.36254 1.50023 0.97245 0.86543 0.85376 0.78063 0.78063 1.19715 1.21056 1.21064 1.72194 0.96120 1.30447 1.19637 1.85130 0.97461 1.09317 1.67817 0.89979 0.90687 0.89626 0.80044 0.86916 0.87678 0.91538 0.91342 0.92836 0.92845 0.96539 0.96543 0.93070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.33 10.41 36.01 0.37 0.04 16 2 C -0.21 -1.67 6.60 -35.84 -0.24 -1.91 16 3 C 0.03 0.32 11.15 -19.38 -0.22 0.10 16 4 N -0.42 -5.73 10.57 -11.34 -0.12 -5.85 16 5 C 0.13 1.75 7.54 -14.27 -0.11 1.64 16 6 C 0.23 3.57 8.12 -156.09 -1.27 2.30 16 7 N -0.37 -5.39 12.21 30.97 0.38 -5.01 16 8 O 0.09 1.26 11.29 18.01 0.20 1.46 16 9 C 0.21 2.83 7.75 -12.98 -0.10 2.73 16 10 C -0.03 -0.37 5.84 -27.88 -0.16 -0.54 16 11 C -0.12 -1.79 5.20 -26.73 -0.14 -1.93 16 12 C -0.11 -2.03 5.15 -26.73 -0.14 -2.17 16 13 C 0.02 0.47 4.97 -27.88 -0.14 0.34 16 14 C -0.52 -14.52 9.11 -34.44 -0.31 -14.83 16 15 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 16 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 17 N -0.90 -26.97 13.29 55.43 0.74 -26.23 16 18 Si 0.89 21.56 29.54 -169.99 -5.02 16.53 16 19 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 N -0.45 -7.16 11.58 -9.90 -0.11 -7.27 16 23 S 0.15 1.50 23.43 -107.50 -2.52 -1.02 16 24 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 25 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.18 1.23 8.06 -52.48 -0.42 0.81 16 28 H 0.11 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 334.20 15.07 5.04 5.04 Total: -1.00 -33.13 334.20 -8.58 -41.71 By element: Atomic # 1 Polarization: -1.99 SS G_CDS: -4.61 Total: -6.61 kcal Atomic # 6 Polarization: -10.20 SS G_CDS: -2.54 Total: -12.75 kcal Atomic # 7 Polarization: -45.24 SS G_CDS: 0.88 Total: -44.36 kcal Atomic # 8 Polarization: 1.26 SS G_CDS: 0.20 Total: 1.46 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: 1.50 SS G_CDS: -2.52 Total: -1.02 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.13 -8.58 -41.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351146408.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.515 kcal (2) G-P(sol) polarization free energy of solvation -33.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds