Wall clock time and date at job start Tue Mar 31 2020 06:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33889 * 125.91371 * 2 1 4 4 N 1.31132 * 115.83506 * 179.97438 * 3 2 1 5 5 C 1.30191 * 117.09958 * 0.02562 * 4 3 2 6 6 C 1.47944 * 125.46796 * 180.02562 * 5 4 3 7 7 N 1.30929 * 126.43347 * 180.02562 * 6 5 4 8 8 O 1.21292 * 110.06026 * 179.72381 * 7 6 5 9 9 C 1.33681 * 110.06359 * 0.39929 * 8 7 6 10 10 C 1.50706 * 126.41623 * 179.86151 * 9 8 7 11 11 C 1.52999 * 109.46953 * 269.69426 * 10 9 8 12 12 C 1.53006 * 109.46623 * 179.97438 * 11 10 9 13 13 C 1.52999 * 109.46626 * 179.97438 * 12 11 10 14 14 C 1.50706 * 109.46957 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99816 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00340 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99773 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00296 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.46692 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47025 * 119.99570 * 18 16 14 21 21 H 1.48492 * 109.46854 * 239.99727 * 18 16 14 22 22 N 1.30935 * 107.16551 * 359.60341 * 9 8 7 23 23 S 1.76179 * 109.06507 * 0.26469 * 5 4 3 24 24 H 1.09002 * 109.46721 * 89.99301 * 1 2 3 25 25 H 1.09000 * 109.47305 * 209.99836 * 1 2 3 26 26 H 1.09002 * 109.46501 * 329.99756 * 1 2 3 27 27 H 1.08006 * 122.08465 * 0.02562 * 3 2 1 28 28 H 1.09000 * 109.46974 * 149.69174 * 10 9 8 29 29 H 1.09001 * 109.46547 * 29.69264 * 10 9 8 30 30 H 1.09000 * 109.47486 * 60.00062 * 11 10 9 31 31 H 1.09001 * 109.47362 * 299.99339 * 11 10 9 32 32 H 1.08993 * 109.46955 * 300.00075 * 12 11 10 33 33 H 1.09000 * 109.47050 * 59.99904 * 12 11 10 34 34 H 1.08993 * 109.47839 * 299.99931 * 13 12 11 35 35 H 1.09000 * 109.47160 * 60.00369 * 13 12 11 36 36 H 0.97000 * 120.00540 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2924 1.0844 0.0000 4 7 3.5834 0.8549 0.0005 5 6 3.9645 -0.3900 0.0005 6 6 5.3680 -0.8581 0.0015 7 7 5.7723 -2.1034 0.0010 8 8 6.9844 -2.1473 -0.0033 9 6 7.4881 -0.9091 0.0028 10 6 8.9487 -0.5374 0.0031 11 6 9.4425 -0.4118 1.4458 12 6 10.9255 -0.0351 1.4461 13 6 11.4192 0.0911 2.8887 14 6 12.8797 0.4628 2.8891 15 1 13.4032 0.5961 1.9539 16 6 13.5476 0.6327 4.0833 17 7 12.9100 0.4708 5.2221 18 14 15.3577 1.0941 4.0837 19 1 15.8376 1.2162 2.6838 20 1 15.5377 2.3910 4.7841 21 1 16.1366 0.0412 4.7836 22 7 6.4750 -0.0797 0.0026 23 16 2.5408 -1.4277 -0.0080 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3632 0.8900 0.5139 27 1 1.8877 2.0858 0.0004 28 1 9.0814 0.4147 -0.5106 29 1 9.5203 -1.3103 -0.5107 30 1 9.3098 -1.3640 1.9595 31 1 8.8709 0.3611 1.9596 32 1 11.4968 -0.8082 0.9324 33 1 11.0586 0.9169 0.9322 34 1 10.8478 0.8644 3.4020 35 1 11.2860 -0.8607 3.4029 36 1 13.3796 0.5907 6.0623 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351146408.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:56 Heat of formation + Delta-G solvation = 68.980258 kcal Electronic energy + Delta-G solvation = -19298.099960 eV Core-core repulsion = 16104.003162 eV Total energy + Delta-G solvation = -3194.096798 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -46.80272 -40.76535 -37.53160 -36.88086 -35.23586 -33.98004 -33.32726 -31.05197 -29.02127 -27.53002 -26.15261 -24.87076 -24.33206 -22.85788 -21.78840 -20.90386 -19.35194 -19.05280 -18.45076 -18.32380 -16.94751 -16.54746 -16.36841 -15.95389 -15.75684 -15.40621 -14.64883 -14.34534 -14.19671 -14.02682 -13.74719 -13.69932 -13.65282 -13.49554 -12.95937 -12.84765 -12.38506 -12.35653 -12.24357 -12.16745 -12.13531 -11.58718 -11.34516 -11.23490 -10.99495 -10.94962 -10.52505 -10.48384 -9.79570 -8.16838 -6.27465 -1.04453 -0.13668 0.02355 0.42765 0.94491 1.42659 1.42913 1.56232 1.61674 1.81094 1.99780 2.43825 2.69250 3.16834 3.60904 3.70782 3.87121 4.03136 4.08437 4.10927 4.19697 4.57734 4.63292 4.70014 4.77643 4.79947 4.81229 4.91062 4.92265 5.16557 5.18112 5.33798 5.35287 5.60106 5.83012 5.92511 6.29049 6.44383 6.85138 6.91851 7.42062 8.95331 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.035755 B = 0.002249 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.918171 B =12447.998603 C =12785.291396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.175 4.175 3 C 0.009 3.991 4 N -0.446 5.446 5 C 0.076 3.924 6 C 0.227 3.773 7 N -0.378 5.378 8 O 0.093 5.907 9 C 0.212 3.788 10 C -0.020 4.020 11 C -0.107 4.107 12 C -0.095 4.095 13 C 0.017 3.983 14 C -0.538 4.538 15 H 0.066 0.934 16 C -0.007 4.007 17 N -0.937 5.937 18 Si 0.965 3.035 19 H -0.258 1.258 20 H -0.282 1.282 21 H -0.280 1.280 22 N -0.482 5.482 23 S 0.170 5.830 24 H 0.101 0.899 25 H 0.086 0.914 26 H 0.106 0.894 27 H 0.209 0.791 28 H 0.127 0.873 29 H 0.139 0.861 30 H 0.063 0.937 31 H 0.049 0.951 32 H 0.070 0.930 33 H 0.061 0.939 34 H -0.015 1.015 35 H -0.009 1.009 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.119 -3.639 -14.667 29.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.298 4.298 3 C -0.143 4.143 4 N -0.162 5.162 5 C -0.198 4.198 6 C -0.046 4.046 7 N -0.086 5.086 8 O 0.030 5.970 9 C -0.008 4.008 10 C -0.058 4.058 11 C -0.146 4.146 12 C -0.133 4.133 13 C -0.020 4.020 14 C -0.576 4.576 15 H 0.085 0.915 16 C -0.204 4.204 17 N -0.578 5.578 18 Si 0.790 3.210 19 H -0.181 1.181 20 H -0.208 1.208 21 H -0.206 1.206 22 N -0.215 5.215 23 S 0.423 5.577 24 H 0.119 0.881 25 H 0.105 0.895 26 H 0.125 0.875 27 H 0.225 0.775 28 H 0.145 0.855 29 H 0.157 0.843 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.004 0.996 35 H 0.009 0.991 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -25.593 -4.607 -14.516 29.781 hybrid contribution 0.878 1.118 0.728 1.597 sum -24.715 -3.489 -13.788 28.515 Atomic orbital electron populations 1.20580 0.82788 1.05551 1.05022 1.26919 1.03727 0.93643 1.05517 1.22115 0.85270 1.02277 1.04682 1.66320 1.19020 1.18701 1.12208 1.23437 0.92734 0.91928 1.11704 1.22622 0.93262 0.85627 1.03077 1.74931 0.92618 1.19614 1.21433 1.85267 1.13769 1.32788 1.65181 1.29526 1.00261 0.78383 0.92600 1.20622 0.79157 1.06422 0.99638 1.21534 0.96922 1.01856 0.94306 1.21416 0.93191 1.01413 0.97244 1.19074 0.94796 0.94674 0.93463 1.21808 0.96770 1.46261 0.92742 0.91541 1.26040 1.03413 0.95568 0.95385 1.70119 1.38389 1.51322 0.97999 0.85390 0.79229 0.77634 0.78746 1.18128 1.20767 1.20590 1.72174 0.97006 1.31543 1.20809 1.84976 0.96198 1.09621 1.66950 0.88061 0.89541 0.87523 0.77458 0.85480 0.84258 0.91783 0.93170 0.91101 0.91987 0.99650 0.99076 0.92964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.40 10.41 71.24 0.74 0.34 16 2 C -0.18 -2.48 6.60 24.70 0.16 -2.32 16 3 C 0.01 0.16 11.15 83.81 0.93 1.09 16 4 N -0.45 -12.30 10.57 -189.78 -2.01 -14.31 16 5 C 0.08 2.12 7.54 87.51 0.66 2.78 16 6 C 0.23 7.11 8.12 137.07 1.11 8.22 16 7 N -0.38 -11.26 12.21 -58.96 -0.72 -11.98 16 8 O 0.09 2.54 11.29 74.50 0.84 3.38 16 9 C 0.21 5.75 7.75 88.36 0.68 6.43 16 10 C -0.02 -0.44 5.84 29.85 0.17 -0.26 16 11 C -0.11 -3.26 5.20 30.60 0.16 -3.10 16 12 C -0.10 -3.50 5.15 30.60 0.16 -3.34 16 13 C 0.02 0.88 4.97 29.85 0.15 1.03 16 14 C -0.54 -30.16 9.11 25.60 0.23 -29.93 16 15 H 0.07 3.51 7.74 -2.91 -0.02 3.48 16 16 C -0.01 -0.40 5.46 84.65 0.46 0.06 16 17 N -0.94 -57.77 13.29 21.45 0.28 -57.49 16 18 Si 0.97 44.21 29.54 68.60 2.03 46.23 16 19 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 20 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 21 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 22 N -0.48 -15.58 11.58 -302.43 -3.50 -19.09 16 23 S 0.17 3.28 23.43 -56.49 -1.32 1.96 16 24 H 0.10 0.24 8.14 -2.39 -0.02 0.22 16 25 H 0.09 0.31 8.14 -2.39 -0.02 0.29 16 26 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 27 H 0.21 2.43 8.06 -2.91 -0.02 2.41 16 28 H 0.13 2.51 8.14 -2.39 -0.02 2.49 16 29 H 0.14 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 33 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 34 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 35 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 36 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -74.49 334.20 2.32 -72.17 By element: Atomic # 1 Polarization: -2.97 SS G_CDS: 1.09 Total: -1.88 kcal Atomic # 6 Polarization: -24.63 SS G_CDS: 5.63 Total: -19.00 kcal Atomic # 7 Polarization: -96.91 SS G_CDS: -5.94 Total: -102.86 kcal Atomic # 8 Polarization: 2.54 SS G_CDS: 0.84 Total: 3.38 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.23 kcal Atomic # 16 Polarization: 3.28 SS G_CDS: -1.32 Total: 1.96 kcal Total: -74.49 2.32 -72.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351146408.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.146 kcal (2) G-P(sol) polarization free energy of solvation -74.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds