Wall clock time and date at job start Tue Mar 31 2020 07:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53010 * 109.47361 * 2 1 4 4 N 1.46498 * 109.47171 * 179.97438 * 3 2 1 5 5 C 1.36934 * 120.00181 * 275.68688 * 4 3 2 6 6 H 1.08003 * 119.99846 * 38.48964 * 5 4 3 7 7 C 1.38808 * 120.00225 * 218.49726 * 5 4 3 8 8 N 1.31615 * 119.99803 * 18.91979 * 7 5 4 9 9 Si 1.86803 * 120.00151 * 198.92824 * 7 5 4 10 10 H 1.48499 * 109.47394 * 89.99401 * 9 7 5 11 11 H 1.48506 * 109.46961 * 209.99616 * 9 7 5 12 12 H 1.48496 * 109.46871 * 329.99360 * 9 7 5 13 13 C 1.46498 * 119.99842 * 95.68219 * 4 3 2 14 14 C 1.50695 * 109.47627 * 270.00071 * 13 4 3 15 15 C 1.34181 * 126.91321 * 269.96190 * 14 13 4 16 16 Cl 1.73601 * 124.93850 * 0.02893 * 15 14 13 17 17 O 1.34452 * 110.11981 * 180.02562 * 15 14 13 18 18 C 1.34838 * 110.89488 * 0.02562 * 17 15 14 19 19 C 1.38918 * 133.46851 * 180.02562 * 18 17 15 20 20 C 1.37864 * 119.82359 * 179.97438 * 19 18 17 21 21 C 1.38735 * 120.68549 * 0.02562 * 20 19 18 22 22 C 1.36745 * 120.41520 * 359.97438 * 21 20 19 23 23 C 1.39416 * 119.71312 * 0.02562 * 22 21 20 24 24 H 1.08998 * 109.46901 * 300.00198 * 1 2 3 25 25 H 1.09003 * 109.46670 * 60.00140 * 1 2 3 26 26 H 1.08992 * 109.47104 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47423 * 239.99748 * 2 1 3 28 28 H 1.09001 * 109.47401 * 119.99776 * 2 1 3 29 29 H 1.09004 * 109.46690 * 59.99678 * 3 2 1 30 30 H 1.09001 * 109.46680 * 300.00218 * 3 2 1 31 31 H 0.97004 * 120.00216 * 180.02562 * 8 7 5 32 32 H 1.09004 * 109.46986 * 149.99988 * 13 4 3 33 33 H 1.08997 * 109.46966 * 30.00506 * 13 4 3 34 34 H 1.08002 * 120.08630 * 0.02562 * 19 18 17 35 35 H 1.07998 * 119.66289 * 180.27734 * 20 19 18 36 36 H 1.08006 * 119.79342 * 179.97438 * 21 20 19 37 37 H 1.08000 * 120.14944 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.1893 1.3252 1.1809 6 1 3.8249 0.6634 1.9528 7 6 5.3510 2.0568 1.3855 8 7 5.6014 3.1150 0.6440 9 14 6.5592 1.5394 2.7130 10 1 7.5508 0.5947 2.1390 11 1 7.2626 2.7380 3.2364 12 1 5.8244 0.8744 3.8189 13 6 4.2381 1.5679 -1.2616 14 6 4.4895 0.1972 -1.8350 15 6 5.5531 -0.5887 -1.6080 16 17 6.8914 -0.1783 -0.5812 17 8 5.4317 -1.7402 -2.2914 18 6 4.2833 -1.7613 -2.9977 19 6 3.6995 -2.6947 -3.8449 20 6 2.4840 -2.4197 -4.4346 21 6 1.8351 -1.2178 -4.1916 22 6 2.3926 -0.2856 -3.3610 23 6 3.6212 -0.5460 -2.7557 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6767 1.9564 -0.8900 31 1 6.4135 3.6261 0.7866 32 1 5.1905 2.0664 -1.0807 33 1 3.6493 2.1544 -1.9669 34 1 4.1961 -3.6337 -4.0405 35 1 2.0303 -3.1491 -5.0892 36 1 0.8835 -1.0172 -4.6615 37 1 1.8835 0.6485 -3.1745 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352655599.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:56 Heat of formation + Delta-G solvation = 40.932262 kcal Electronic energy + Delta-G solvation = -21940.439893 eV Core-core repulsion = 18710.790386 eV Total energy + Delta-G solvation = -3229.649507 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.98806 -37.62640 -36.45228 -36.02737 -33.11801 -32.48131 -30.61872 -30.09087 -28.83469 -25.88097 -25.51960 -22.96816 -22.18327 -21.93102 -20.24683 -19.50006 -17.22934 -16.92510 -16.32377 -15.81681 -15.57511 -14.84217 -14.32785 -13.96686 -13.90803 -13.58851 -13.18564 -12.94497 -12.86036 -12.19366 -12.15454 -11.95041 -11.56778 -11.42927 -11.24327 -11.07396 -10.75658 -10.74259 -10.55242 -10.48095 -10.30519 -10.07789 -9.89956 -9.85557 -9.20566 -8.47961 -8.34121 -7.55036 -6.58873 -5.81263 -3.39180 1.18928 1.60913 1.81625 2.79160 3.31884 3.40847 3.43345 3.81414 3.98361 4.46835 4.92440 5.10639 5.23717 5.32888 5.41376 5.49360 5.53170 5.66200 5.70871 5.79883 5.93978 6.10218 6.19365 6.28799 6.41598 6.46759 6.48464 6.61890 6.64727 6.66037 6.77096 6.90764 6.96874 7.00391 7.22127 7.46307 7.61488 7.82832 8.51544 9.17051 9.78603 10.37168 11.19521 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.016088 B = 0.007546 C = 0.005742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.989014 B = 3709.593320 C = 4875.558419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.148 4.148 3 C 0.151 3.849 4 N -0.571 5.571 5 C -0.253 4.253 6 H 0.057 0.943 7 C 0.028 3.972 8 N -0.883 5.883 9 Si 0.879 3.121 10 H -0.281 1.281 11 H -0.290 1.290 12 H -0.276 1.276 13 C 0.199 3.801 14 C -0.123 4.123 15 C 0.049 3.951 16 Cl 0.039 6.961 17 O -0.201 6.201 18 C 0.055 3.945 19 C -0.111 4.111 20 C -0.101 4.101 21 C -0.145 4.145 22 C -0.057 4.057 23 C -0.111 4.111 24 H 0.048 0.952 25 H 0.046 0.954 26 H 0.041 0.959 27 H 0.057 0.943 28 H 0.053 0.947 29 H 0.045 0.955 30 H 0.033 0.967 31 H 0.255 0.745 32 H 0.115 0.885 33 H 0.039 0.961 34 H 0.126 0.874 35 H 0.129 0.871 36 H 0.124 0.876 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.109 -7.415 -8.714 12.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.188 4.188 3 C 0.025 3.975 4 N -0.290 5.290 5 C -0.382 4.382 6 H 0.075 0.925 7 C -0.173 4.173 8 N -0.525 5.525 9 Si 0.709 3.291 10 H -0.208 1.208 11 H -0.217 1.217 12 H -0.201 1.201 13 C 0.073 3.927 14 C -0.128 4.128 15 C -0.025 4.025 16 Cl 0.068 6.932 17 O -0.104 6.104 18 C 0.008 3.992 19 C -0.130 4.130 20 C -0.119 4.119 21 C -0.163 4.163 22 C -0.075 4.075 23 C -0.113 4.113 24 H 0.067 0.933 25 H 0.065 0.935 26 H 0.060 0.940 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.051 0.949 31 H 0.066 0.934 32 H 0.132 0.868 33 H 0.057 0.943 34 H 0.144 0.856 35 H 0.147 0.853 36 H 0.142 0.858 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -4.670 -7.397 -8.560 12.240 hybrid contribution 0.887 -0.484 0.896 1.351 sum -3.782 -7.882 -7.664 11.626 Atomic orbital electron populations 1.21703 0.97446 1.00236 1.00871 1.22204 0.93661 1.01149 1.01811 1.20906 0.84990 0.92876 0.98740 1.43685 0.99328 1.84152 1.01827 1.18931 1.06506 1.19073 0.93740 0.92503 1.25021 1.00342 0.94469 0.97423 1.69903 1.25976 1.15303 1.41283 0.86645 0.82099 0.77941 0.82465 1.20770 1.21652 1.20093 1.19600 1.01179 0.86266 0.85705 1.22549 0.90779 1.02013 0.97484 1.22192 0.95101 0.86407 0.98753 1.98458 1.43114 1.89870 1.61759 1.83793 1.37350 1.37345 1.51952 1.19516 0.85874 0.97007 0.96850 1.19823 0.96377 0.98299 0.98497 1.20788 0.93981 0.97418 0.99713 1.20679 1.00660 0.94407 1.00548 1.20283 0.93006 0.99439 0.94814 1.19892 0.96693 0.94510 1.00181 0.93330 0.93505 0.93996 0.92386 0.92791 0.93630 0.94855 0.93436 0.86750 0.94302 0.85608 0.85329 0.85796 0.85641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.91 37.16 0.37 -1.78 16 2 C -0.15 -2.75 6.23 -26.72 -0.17 -2.91 16 3 C 0.15 3.11 5.72 -4.04 -0.02 3.09 16 4 N -0.57 -13.64 2.41 -174.61 -0.42 -14.06 16 5 C -0.25 -6.62 9.46 -15.06 -0.14 -6.77 16 6 H 0.06 1.54 7.90 -52.48 -0.41 1.13 16 7 C 0.03 0.74 4.48 -17.43 -0.08 0.66 16 8 N -0.88 -23.96 11.38 55.49 0.63 -23.33 16 9 Si 0.88 21.07 28.88 -169.99 -4.91 16.16 16 10 H -0.28 -6.57 6.91 56.52 0.39 -6.18 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 13 C 0.20 4.55 5.66 -5.20 -0.03 4.53 16 14 C -0.12 -2.60 5.86 -102.61 -0.60 -3.20 16 15 C 0.05 1.05 7.84 29.30 0.23 1.28 16 16 Cl 0.04 0.83 27.35 -51.86 -1.42 -0.59 16 17 O -0.20 -4.01 10.58 3.82 0.04 -3.97 16 18 C 0.06 1.00 7.42 -38.48 -0.29 0.71 16 19 C -0.11 -1.58 10.07 -39.47 -0.40 -1.98 16 20 C -0.10 -1.22 10.01 -39.53 -0.40 -1.62 16 21 C -0.14 -1.84 9.98 -39.94 -0.40 -2.24 16 22 C -0.06 -0.89 8.88 -39.68 -0.35 -1.24 16 23 C -0.11 -2.07 5.30 -105.16 -0.56 -2.62 16 24 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 1.11 5.54 -51.93 -0.29 0.82 16 28 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.05 0.97 8.09 -51.93 -0.42 0.55 16 30 H 0.03 0.64 7.83 -51.93 -0.41 0.23 16 31 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 32 H 0.12 2.91 5.21 -51.93 -0.27 2.64 16 33 H 0.04 0.84 7.86 -51.93 -0.41 0.43 16 34 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 35 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 36 H 0.12 1.22 8.06 -52.48 -0.42 0.79 16 37 H 0.13 1.84 8.06 -52.49 -0.42 1.42 16 LS Contribution 324.08 15.07 4.88 4.88 Total: -1.00 -27.73 324.08 -8.76 -36.49 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: -4.74 Total: -1.49 kcal Atomic # 6 Polarization: -11.26 SS G_CDS: -2.83 Total: -14.09 kcal Atomic # 7 Polarization: -37.60 SS G_CDS: 0.21 Total: -37.39 kcal Atomic # 8 Polarization: -4.01 SS G_CDS: 0.04 Total: -3.97 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.91 Total: 16.16 kcal Atomic # 17 Polarization: 0.83 SS G_CDS: -1.42 Total: -0.59 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -27.73 -8.76 -36.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352655599.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.418 kcal (2) G-P(sol) polarization free energy of solvation -27.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds