Wall clock time and date at job start Tue Mar 31 2020 07:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53010 * 109.47361 * 2 1 4 4 N 1.46498 * 109.47171 * 179.97438 * 3 2 1 5 5 C 1.36934 * 120.00181 * 275.68688 * 4 3 2 6 6 H 1.08003 * 119.99846 * 38.48964 * 5 4 3 7 7 C 1.38808 * 120.00225 * 218.49726 * 5 4 3 8 8 N 1.31615 * 119.99803 * 18.91979 * 7 5 4 9 9 Si 1.86803 * 120.00151 * 198.92824 * 7 5 4 10 10 H 1.48499 * 109.47394 * 89.99401 * 9 7 5 11 11 H 1.48506 * 109.46961 * 209.99616 * 9 7 5 12 12 H 1.48496 * 109.46871 * 329.99360 * 9 7 5 13 13 C 1.46498 * 119.99842 * 95.68219 * 4 3 2 14 14 C 1.50695 * 109.47627 * 270.00071 * 13 4 3 15 15 C 1.34181 * 126.91321 * 269.96190 * 14 13 4 16 16 Cl 1.73601 * 124.93850 * 0.02893 * 15 14 13 17 17 O 1.34452 * 110.11981 * 180.02562 * 15 14 13 18 18 C 1.34838 * 110.89488 * 0.02562 * 17 15 14 19 19 C 1.38918 * 133.46851 * 180.02562 * 18 17 15 20 20 C 1.37864 * 119.82359 * 179.97438 * 19 18 17 21 21 C 1.38735 * 120.68549 * 0.02562 * 20 19 18 22 22 C 1.36745 * 120.41520 * 359.97438 * 21 20 19 23 23 C 1.39416 * 119.71312 * 0.02562 * 22 21 20 24 24 H 1.08998 * 109.46901 * 300.00198 * 1 2 3 25 25 H 1.09003 * 109.46670 * 60.00140 * 1 2 3 26 26 H 1.08992 * 109.47104 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47423 * 239.99748 * 2 1 3 28 28 H 1.09001 * 109.47401 * 119.99776 * 2 1 3 29 29 H 1.09004 * 109.46690 * 59.99678 * 3 2 1 30 30 H 1.09001 * 109.46680 * 300.00218 * 3 2 1 31 31 H 0.97004 * 120.00216 * 180.02562 * 8 7 5 32 32 H 1.09004 * 109.46986 * 149.99988 * 13 4 3 33 33 H 1.08997 * 109.46966 * 30.00506 * 13 4 3 34 34 H 1.08002 * 120.08630 * 0.02562 * 19 18 17 35 35 H 1.07998 * 119.66289 * 180.27734 * 20 19 18 36 36 H 1.08006 * 119.79342 * 179.97438 * 21 20 19 37 37 H 1.08000 * 120.14944 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.1893 1.3252 1.1809 6 1 3.8249 0.6634 1.9528 7 6 5.3510 2.0568 1.3855 8 7 5.6014 3.1150 0.6440 9 14 6.5592 1.5394 2.7130 10 1 7.5508 0.5947 2.1390 11 1 7.2626 2.7380 3.2364 12 1 5.8244 0.8744 3.8189 13 6 4.2381 1.5679 -1.2616 14 6 4.4895 0.1972 -1.8350 15 6 5.5531 -0.5887 -1.6080 16 17 6.8914 -0.1783 -0.5812 17 8 5.4317 -1.7402 -2.2914 18 6 4.2833 -1.7613 -2.9977 19 6 3.6995 -2.6947 -3.8449 20 6 2.4840 -2.4197 -4.4346 21 6 1.8351 -1.2178 -4.1916 22 6 2.3926 -0.2856 -3.3610 23 6 3.6212 -0.5460 -2.7557 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6767 1.9564 -0.8900 31 1 6.4135 3.6261 0.7866 32 1 5.1905 2.0664 -1.0807 33 1 3.6493 2.1544 -1.9669 34 1 4.1961 -3.6337 -4.0405 35 1 2.0303 -3.1491 -5.0892 36 1 0.8835 -1.0172 -4.6615 37 1 1.8835 0.6485 -3.1745 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352655599.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:55 Heat of formation + Delta-G solvation = 28.051420 kcal Electronic energy + Delta-G solvation = -21940.998448 eV Core-core repulsion = 18710.790386 eV Total energy + Delta-G solvation = -3230.208063 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.38200 -38.81533 -38.16555 -37.66560 -34.68492 -34.11546 -32.26836 -31.32207 -30.16547 -27.59461 -27.25003 -24.21951 -23.82454 -23.16259 -21.83547 -21.00314 -18.81385 -18.43136 -17.86123 -17.30529 -16.78058 -16.74380 -15.88714 -15.64394 -15.20718 -14.84528 -14.80098 -14.44975 -14.30648 -13.62516 -13.49915 -13.29856 -13.22461 -12.93333 -12.69608 -12.69278 -12.52006 -12.31094 -12.16872 -12.07806 -11.90110 -11.84596 -11.60001 -11.39050 -10.62004 -10.45975 -9.54479 -8.96759 -8.52339 -7.80450 -5.42285 -0.04773 0.27537 0.43844 1.31087 1.39499 1.44101 1.47894 2.43238 2.49920 2.82753 3.30161 3.72173 3.82976 3.91175 4.03351 4.20792 4.29563 4.40851 4.45243 4.55880 4.61975 4.72748 4.84556 4.89230 5.00707 5.08652 5.16879 5.24321 5.27753 5.37748 5.46655 5.50745 5.57576 5.66543 5.68282 5.75214 5.76556 6.16856 6.51637 7.20804 7.87373 8.41349 9.16198 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.016088 B = 0.007546 C = 0.005742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.989014 B = 3709.593320 C = 4875.558419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.136 4.136 3 C 0.150 3.850 4 N -0.585 5.585 5 C -0.257 4.257 6 H 0.041 0.959 7 C 0.003 3.997 8 N -0.904 5.904 9 Si 0.912 3.088 10 H -0.275 1.275 11 H -0.292 1.292 12 H -0.275 1.275 13 C 0.206 3.794 14 C -0.133 4.133 15 C 0.031 3.969 16 Cl 0.025 6.975 17 O -0.211 6.211 18 C 0.030 3.970 19 C -0.116 4.116 20 C -0.080 4.080 21 C -0.129 4.129 22 C -0.071 4.071 23 C -0.135 4.135 24 H 0.051 0.949 25 H 0.065 0.935 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.026 0.974 29 H 0.033 0.967 30 H 0.049 0.951 31 H 0.252 0.748 32 H 0.088 0.912 33 H 0.043 0.957 34 H 0.150 0.850 35 H 0.177 0.823 36 H 0.164 0.836 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.594 -9.214 -10.872 16.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.176 4.176 3 C 0.025 3.975 4 N -0.304 5.304 5 C -0.387 4.387 6 H 0.059 0.941 7 C -0.196 4.196 8 N -0.547 5.547 9 Si 0.741 3.259 10 H -0.201 1.201 11 H -0.218 1.218 12 H -0.201 1.201 13 C 0.080 3.920 14 C -0.138 4.138 15 C -0.043 4.043 16 Cl 0.053 6.947 17 O -0.116 6.116 18 C -0.017 4.017 19 C -0.135 4.135 20 C -0.098 4.098 21 C -0.147 4.147 22 C -0.089 4.089 23 C -0.136 4.136 24 H 0.070 0.930 25 H 0.084 0.916 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.045 0.955 29 H 0.051 0.949 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.105 0.895 33 H 0.061 0.939 34 H 0.168 0.832 35 H 0.194 0.806 36 H 0.182 0.818 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -7.172 -9.215 -10.731 15.859 hybrid contribution 1.516 -0.002 1.406 2.068 sum -5.655 -9.217 -9.325 14.279 Atomic orbital electron populations 1.21627 0.94149 1.01602 1.01985 1.22017 0.96402 0.98928 1.00222 1.21001 0.83318 0.94409 0.98801 1.43824 1.00626 1.84549 1.01450 1.18903 1.07021 1.18426 0.94348 0.94146 1.25335 1.01117 0.94480 0.98673 1.69985 1.26122 1.16109 1.42485 0.86121 0.81035 0.77660 0.81100 1.20129 1.21806 1.20051 1.19329 0.99801 0.87365 0.85516 1.22391 0.91809 1.01165 0.98426 1.22168 0.95121 0.87395 0.99597 1.98432 1.43739 1.90121 1.62360 1.83748 1.38731 1.36641 1.52474 1.20155 0.85450 0.98143 0.97937 1.20339 0.97146 0.98504 0.97491 1.21406 0.92405 0.97744 0.98203 1.21186 1.01589 0.93442 0.98450 1.20500 0.92133 1.00664 0.95594 1.19947 0.98068 0.94614 1.00972 0.92997 0.91642 0.92473 0.92786 0.95543 0.94895 0.93269 0.93792 0.89458 0.93863 0.83183 0.80610 0.81824 0.85293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.68 9.91 71.98 0.71 -2.97 16 2 C -0.14 -4.94 6.23 30.60 0.19 -4.75 16 3 C 0.15 6.19 5.72 86.38 0.49 6.68 16 4 N -0.58 -28.59 2.41 -706.34 -1.71 -30.30 16 5 C -0.26 -13.88 9.46 84.03 0.79 -13.08 16 6 H 0.04 2.29 7.90 -2.91 -0.02 2.26 16 7 C 0.00 0.15 4.48 84.86 0.38 0.53 16 8 N -0.90 -50.56 11.38 21.65 0.25 -50.31 16 9 Si 0.91 44.05 28.88 68.60 1.98 46.03 16 10 H -0.27 -12.90 6.91 99.48 0.69 -12.21 16 11 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 12 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 13 C 0.21 9.71 5.66 85.63 0.48 10.20 16 14 C -0.13 -5.74 5.86 -18.56 -0.11 -5.85 16 15 C 0.03 1.36 7.84 66.89 0.52 1.88 16 16 Cl 0.02 1.09 27.35 -2.72 -0.07 1.02 16 17 O -0.21 -8.57 10.58 -9.26 -0.10 -8.67 16 18 C 0.03 1.05 7.42 22.98 0.17 1.22 16 19 C -0.12 -2.89 10.07 22.34 0.23 -2.67 16 20 C -0.08 -1.48 10.01 22.30 0.22 -1.26 16 21 C -0.13 -2.60 9.98 22.04 0.22 -2.38 16 22 C -0.07 -2.00 8.88 22.20 0.20 -1.81 16 23 C -0.13 -4.89 5.30 -20.21 -0.11 -4.99 16 24 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.05 2.01 5.54 -2.39 -0.01 2.00 16 28 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.03 1.41 8.09 -2.39 -0.02 1.39 16 30 H 0.05 1.85 7.83 -2.39 -0.02 1.83 16 31 H 0.25 13.80 8.31 -92.70 -0.77 13.03 16 32 H 0.09 4.63 5.21 -2.38 -0.01 4.62 16 33 H 0.04 1.92 7.86 -2.39 -0.02 1.90 16 34 H 0.15 2.94 8.06 -2.91 -0.02 2.92 16 35 H 0.18 1.70 8.06 -2.91 -0.02 1.68 16 36 H 0.16 2.07 8.06 -2.91 -0.02 2.05 16 37 H 0.13 3.48 8.06 -2.91 -0.02 3.46 16 Total: -1.00 -62.89 324.08 5.81 -57.08 By element: Atomic # 1 Polarization: 3.35 SS G_CDS: 1.05 Total: 4.41 kcal Atomic # 6 Polarization: -23.66 SS G_CDS: 4.40 Total: -19.25 kcal Atomic # 7 Polarization: -79.15 SS G_CDS: -1.46 Total: -80.61 kcal Atomic # 8 Polarization: -8.57 SS G_CDS: -0.10 Total: -8.67 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 1.98 Total: 46.03 kcal Atomic # 17 Polarization: 1.09 SS G_CDS: -0.07 Total: 1.02 kcal Total: -62.89 5.81 -57.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352655599.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.132 kcal (2) G-P(sol) polarization free energy of solvation -62.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds