Wall clock time and date at job start Tue Mar 31 2020 07:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47495 * 2 1 4 4 H 1.08999 * 109.46965 * 304.99930 * 3 2 1 5 5 C 1.50696 * 109.46890 * 185.00337 * 3 2 1 6 6 H 1.08002 * 120.00157 * 239.99837 * 5 3 2 7 7 C 1.37881 * 120.00447 * 59.99907 * 5 3 2 8 8 N 1.31510 * 119.99635 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 120.00210 * 179.97438 * 7 5 3 10 10 H 1.48508 * 109.47150 * 60.00100 * 9 7 5 11 11 H 1.48498 * 109.47193 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47405 * 300.00440 * 9 7 5 13 13 N 1.46499 * 109.47136 * 65.00280 * 3 2 1 14 14 C 1.34777 * 119.99665 * 275.27771 * 13 3 2 15 15 O 1.21663 * 120.00219 * 359.72106 * 14 13 3 16 16 C 1.46869 * 119.99546 * 179.72432 * 14 13 3 17 17 C 1.33013 * 125.22207 * 179.71801 * 16 14 13 18 18 N 1.36242 * 116.10684 * 179.85216 * 17 16 14 19 19 C 1.39126 * 139.29281 * 180.10385 * 18 17 16 20 20 C 1.34223 * 107.10795 * 180.31480 * 19 18 17 21 21 C 1.50701 * 125.76400 * 179.97438 * 20 19 18 22 22 N 1.33948 * 108.46672 * 359.97438 * 20 19 18 23 23 C 1.32276 * 109.18822 * 359.97438 * 22 20 19 24 24 S 1.75802 * 125.22947 * 0.02562 * 16 14 13 25 25 H 1.09001 * 109.46725 * 300.00105 * 1 2 3 26 26 H 1.08998 * 109.46763 * 59.99672 * 1 2 3 27 27 H 1.08995 * 109.47461 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46725 * 239.99895 * 2 1 3 29 29 H 1.08999 * 109.47141 * 120.00715 * 2 1 3 30 30 H 0.97000 * 120.00295 * 179.97438 * 8 7 5 31 31 H 0.97001 * 119.99790 * 94.99484 * 13 3 2 32 32 H 1.07994 * 121.95191 * 0.02562 * 17 16 14 33 33 H 1.07990 * 126.44372 * 0.34007 * 19 18 17 34 34 H 1.08997 * 109.46700 * 90.00348 * 21 20 19 35 35 H 1.09007 * 109.46707 * 209.99830 * 21 20 19 36 36 H 1.08996 * 109.47475 * 329.99863 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5420 1.4441 -0.1239 6 1 4.1474 1.8886 0.6522 7 6 4.1433 0.8781 -1.2281 8 7 3.4062 0.3364 -2.1729 9 14 6.0049 0.8809 -1.3819 10 1 6.5975 0.1468 -0.2350 11 1 6.3977 0.2174 -2.6511 12 1 6.4996 2.2810 -1.3822 13 7 1.6527 2.0974 1.2518 14 6 0.4333 2.6595 1.3689 15 8 -0.3437 2.6274 0.4333 16 6 0.0426 3.3108 2.6259 17 6 -1.1277 3.9007 2.8529 18 7 -1.2948 4.4450 4.0906 19 6 -2.2593 5.1354 4.8178 20 6 -1.7379 5.3832 6.0295 21 6 -2.4288 6.1117 7.1534 22 7 -0.4998 4.8736 6.0710 23 6 -0.2242 4.3058 4.9085 24 16 1.0528 3.4372 4.0592 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.8292 -0.0614 -2.9499 31 1 2.2722 2.1230 1.9978 32 1 -1.9016 3.9433 2.1008 33 1 -3.2426 5.4182 4.4723 34 1 -2.9735 5.3963 7.7693 35 1 -1.6861 6.6255 7.7639 36 1 -3.1260 6.8403 6.7398 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358054711.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:29:25 Heat of formation + Delta-G solvation = 35.433852 kcal Electronic energy + Delta-G solvation = -20583.890321 eV Core-core repulsion = 17388.338842 eV Total energy + Delta-G solvation = -3195.551479 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.82568 -40.91847 -37.89136 -36.89121 -34.41627 -33.12736 -32.23512 -31.89411 -29.20163 -27.92070 -25.85422 -24.93323 -23.29535 -21.95235 -21.50901 -20.99416 -19.65384 -18.80331 -17.46508 -17.38850 -17.32111 -16.95405 -16.33460 -16.31940 -15.56952 -15.12658 -14.64236 -14.55378 -14.29223 -13.94285 -13.90734 -13.53317 -13.17700 -13.14656 -12.94222 -12.66522 -12.49384 -12.48265 -12.20862 -12.09384 -11.68187 -11.57423 -11.34336 -11.16201 -11.07265 -10.54209 -9.93768 -9.73449 -8.83855 -8.17164 -6.34304 -0.64622 -0.34583 0.36847 0.86103 1.25041 1.46968 1.47665 1.55449 1.67829 2.04241 2.29077 2.50123 3.12872 3.23476 3.52365 3.72613 4.03962 4.18720 4.33498 4.50179 4.57101 4.74256 4.81994 4.88011 4.89321 5.02233 5.05623 5.25462 5.40235 5.43549 5.46288 5.57680 5.69170 5.75322 5.84511 6.13959 6.55182 6.68519 6.74579 7.18576 7.39064 8.87907 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.030423 B = 0.003653 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.128885 B = 7662.456979 C = 8291.744491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.123 4.123 3 C 0.280 3.720 4 H 0.011 0.989 5 C -0.553 4.553 6 H 0.070 0.930 7 C 0.021 3.979 8 N -0.911 5.911 9 Si 0.967 3.033 10 H -0.266 1.266 11 H -0.286 1.286 12 H -0.272 1.272 13 N -0.694 5.694 14 C 0.588 3.412 15 O -0.559 6.559 16 C -0.256 4.256 17 C 0.136 3.864 18 N -0.408 5.408 19 C -0.048 4.048 20 C 0.030 3.970 21 C -0.065 4.065 22 N -0.484 5.484 23 C 0.115 3.885 24 S 0.232 5.768 25 H 0.042 0.958 26 H 0.032 0.968 27 H 0.047 0.953 28 H 0.076 0.924 29 H 0.041 0.959 30 H 0.266 0.734 31 H 0.399 0.601 32 H 0.213 0.787 33 H 0.225 0.775 34 H 0.086 0.914 35 H 0.071 0.929 36 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.354 8.276 14.839 19.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.162 4.162 3 C 0.178 3.822 4 H 0.029 0.971 5 C -0.591 4.591 6 H 0.089 0.911 7 C -0.180 4.180 8 N -0.549 5.549 9 Si 0.792 3.208 10 H -0.190 1.190 11 H -0.211 1.211 12 H -0.197 1.197 13 N -0.341 5.341 14 C 0.372 3.628 15 O -0.440 6.440 16 C -0.379 4.379 17 C 0.001 3.999 18 N -0.086 5.086 19 C -0.178 4.178 20 C -0.099 4.099 21 C -0.123 4.123 22 N -0.210 5.210 23 C -0.251 4.251 24 S 0.483 5.517 25 H 0.061 0.939 26 H 0.051 0.949 27 H 0.066 0.934 28 H 0.095 0.905 29 H 0.060 0.940 30 H 0.075 0.925 31 H 0.234 0.766 32 H 0.230 0.770 33 H 0.242 0.758 34 H 0.105 0.895 35 H 0.090 0.910 36 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -9.071 7.759 14.949 19.131 hybrid contribution -0.522 0.192 -1.205 1.327 sum -9.593 7.951 13.745 18.552 Atomic orbital electron populations 1.21708 0.96751 0.99468 1.00425 1.21820 0.93986 0.98804 1.01625 1.18516 0.93910 0.89378 0.80443 0.97117 1.21514 0.91286 1.39432 1.06910 0.91144 1.25685 1.03099 0.94233 0.94952 1.70011 1.37087 1.38012 1.09788 0.85475 0.79318 0.78464 0.77579 1.19029 1.21122 1.19718 1.46199 1.14310 1.55475 1.18158 1.16782 0.82632 0.78379 0.84982 1.90810 1.52215 1.61071 1.39950 1.23466 1.00057 1.13215 1.01158 1.20755 0.98996 0.93563 0.86590 1.43836 1.14564 1.40093 1.10126 1.23381 0.97096 1.05091 0.92199 1.21602 0.90419 1.01333 0.96561 1.20265 0.99438 0.99267 0.93302 1.70490 1.17088 1.15529 1.17853 1.26701 0.95282 1.09776 0.93292 1.84742 1.09202 1.57731 1.00027 0.93876 0.94908 0.93435 0.90542 0.94030 0.92450 0.76650 0.77042 0.75813 0.89526 0.90981 0.87887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.38 8.51 71.98 0.61 -4.77 16 2 C -0.12 -5.84 5.45 30.59 0.17 -5.67 16 3 C 0.28 13.78 2.24 44.24 0.10 13.88 16 4 H 0.01 0.63 7.58 -2.39 -0.02 0.61 16 5 C -0.55 -28.44 8.73 25.60 0.22 -28.22 16 6 H 0.07 3.41 7.74 -2.91 -0.02 3.39 16 7 C 0.02 1.10 5.29 84.66 0.45 1.55 16 8 N -0.91 -50.42 11.29 21.45 0.24 -50.18 16 9 Si 0.97 41.13 29.54 68.60 2.03 43.16 16 10 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 11 H -0.29 -12.08 7.11 99.48 0.71 -11.37 16 12 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 13 N -0.69 -27.94 5.02 -449.91 -2.26 -30.20 16 14 C 0.59 22.24 6.35 86.50 0.55 22.79 16 15 O -0.56 -24.31 13.87 -4.23 -0.06 -24.37 16 16 C -0.26 -7.65 6.34 23.37 0.15 -7.51 16 17 C 0.14 3.46 10.94 82.84 0.91 4.36 16 18 N -0.41 -10.10 3.15 -354.86 -1.12 -11.21 16 19 C -0.05 -0.91 11.92 82.62 0.99 0.08 16 20 C 0.03 0.64 7.05 41.32 0.29 0.93 16 21 C -0.07 -0.79 10.41 71.24 0.74 -0.05 16 22 N -0.48 -13.83 11.32 -184.69 -2.09 -15.92 16 23 C 0.11 3.25 8.92 179.61 1.60 4.86 16 24 S 0.23 6.25 22.41 -56.49 -1.27 4.99 16 25 H 0.04 1.76 5.63 -2.39 -0.01 1.75 16 26 H 0.03 1.49 7.84 -2.39 -0.02 1.47 16 27 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.08 4.05 5.95 -2.39 -0.01 4.04 16 29 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.27 14.03 8.31 -92.71 -0.77 13.26 16 31 H 0.40 14.19 7.64 -92.71 -0.71 13.48 16 32 H 0.21 4.51 7.97 -2.91 -0.02 4.48 16 33 H 0.23 2.19 8.06 -2.92 -0.02 2.16 16 34 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 36 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 Total: -1.00 -65.61 317.48 2.66 -62.95 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: 0.41 Total: 18.55 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: 6.77 Total: 2.23 kcal Atomic # 7 Polarization: -102.29 SS G_CDS: -5.22 Total: -107.51 kcal Atomic # 8 Polarization: -24.31 SS G_CDS: -0.06 Total: -24.37 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 2.03 Total: 43.16 kcal Atomic # 16 Polarization: 6.25 SS G_CDS: -1.27 Total: 4.99 kcal Total: -65.61 2.66 -62.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358054711.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.383 kcal (2) G-P(sol) polarization free energy of solvation -65.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds