Wall clock time and date at job start Tue Mar 31 2020 07:29:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47241 * 2 1 4 4 H 1.08994 * 109.47269 * 55.00202 * 3 2 1 5 5 C 1.50702 * 109.46842 * 174.99958 * 3 2 1 6 6 H 1.08002 * 120.00299 * 120.00437 * 5 3 2 7 7 C 1.37884 * 119.99942 * 299.71996 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48504 * 109.47196 * 60.00645 * 9 7 5 11 11 H 1.48504 * 109.46887 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47679 * 300.00280 * 9 7 5 13 13 N 1.46491 * 109.47168 * 294.99612 * 3 2 1 14 14 C 1.34776 * 120.00056 * 85.00588 * 13 3 2 15 15 O 1.21668 * 119.99898 * 359.97438 * 14 13 3 16 16 C 1.46867 * 120.00451 * 180.02562 * 14 13 3 17 17 C 1.33010 * 125.23109 * 179.97438 * 16 14 13 18 18 N 1.36237 * 116.11469 * 179.97438 * 17 16 14 19 19 C 1.39123 * 139.29616 * 179.97438 * 18 17 16 20 20 C 1.34221 * 107.10626 * 180.02562 * 19 18 17 21 21 C 1.50706 * 125.76421 * 180.02562 * 20 19 18 22 22 N 1.33947 * 108.46989 * 0.02562 * 20 19 18 23 23 C 1.32277 * 109.18631 * 0.02562 * 22 20 19 24 24 S 1.75810 * 125.22625 * 359.68673 * 16 14 13 25 25 H 1.08991 * 109.47795 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47374 * 300.00289 * 1 2 3 27 27 H 1.09003 * 109.46563 * 59.99857 * 1 2 3 28 28 H 1.09003 * 109.46905 * 239.99963 * 2 1 3 29 29 H 1.09003 * 109.46563 * 120.00143 * 2 1 3 30 30 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 31 31 H 0.97003 * 120.00221 * 265.00067 * 13 3 2 32 32 H 1.08004 * 121.94100 * 359.95029 * 17 16 14 33 33 H 1.07998 * 126.44335 * 0.02562 * 19 18 17 34 34 H 1.09002 * 109.47064 * 90.00466 * 21 20 19 35 35 H 1.08997 * 109.46916 * 209.99855 * 21 20 19 36 36 H 1.09000 * 109.47341 * 330.00141 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4441 0.1238 6 1 4.1473 1.8887 -0.6522 7 6 4.1430 0.8833 1.2308 8 7 3.4059 0.3419 2.1758 9 14 6.0043 0.8923 1.3879 10 1 6.4946 2.2940 1.3851 11 1 6.3969 0.2326 2.6592 12 1 6.6013 0.1568 0.2442 13 7 1.6526 2.0974 -1.2518 14 6 0.4353 2.6644 -1.3670 15 8 -0.3419 2.6319 -0.4315 16 6 0.0466 3.3206 -2.6221 17 6 -1.1237 3.9105 -2.8491 18 7 -1.2874 4.4628 -4.0837 19 6 -2.2499 5.1579 -4.8089 20 6 -1.7279 5.4071 -6.0201 21 6 -2.4167 6.1405 -7.1421 22 7 -0.4914 4.8939 -6.0631 23 6 -0.2173 4.3224 -4.9021 24 16 1.0594 3.4532 -4.0531 25 1 -0.3634 -1.0275 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3632 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8932 -0.5139 0.8900 30 1 3.8288 -0.0530 2.9544 31 1 2.2721 2.1230 -1.9977 32 1 -1.8993 3.9490 -2.0984 33 1 -3.2322 5.4432 -4.4625 34 1 -2.2016 7.2063 -7.0655 35 1 -2.0537 5.7645 -8.0987 36 1 -3.4928 5.9811 -7.0738 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358054712.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:29:30 Heat of formation + Delta-G solvation = 53.028160 kcal Electronic energy + Delta-G solvation = -20581.735759 eV Core-core repulsion = 17386.947227 eV Total energy + Delta-G solvation = -3194.788533 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.82227 -39.37043 -36.73938 -35.18379 -32.60561 -31.66910 -31.17923 -30.64818 -27.61509 -26.74519 -24.62080 -23.22378 -21.92922 -20.99258 -19.81522 -19.54490 -18.55303 -17.19805 -16.35663 -16.09957 -15.71313 -15.57538 -14.85747 -14.68973 -14.36761 -13.68623 -13.57102 -13.43462 -13.00031 -12.76714 -12.56520 -12.33160 -11.72228 -11.43749 -11.39054 -11.33052 -11.06758 -10.88979 -10.59573 -10.43158 -10.34710 -10.28973 -9.76198 -9.52086 -9.17053 -8.88095 -8.59629 -8.05987 -7.81934 -6.20165 -4.30353 0.47302 0.71420 1.45223 1.92106 2.30079 2.61864 3.22490 3.27979 3.29028 3.49115 3.75878 4.23671 4.33248 4.43269 4.85811 5.03605 5.06185 5.11847 5.36452 5.40724 5.49160 5.62869 5.88772 6.29989 6.30590 6.35474 6.54368 6.61917 6.93370 7.05996 7.14816 7.26314 7.48391 7.51735 7.59955 7.77162 8.05992 8.39340 8.59751 8.83038 9.36719 10.85186 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.030350 B = 0.003655 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.356548 B = 7659.916917 C = 8290.246442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.129 4.129 3 C 0.271 3.729 4 H 0.055 0.945 5 C -0.539 4.539 6 H 0.062 0.938 7 C 0.069 3.931 8 N -0.881 5.881 9 Si 0.903 3.097 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.275 1.275 13 N -0.692 5.692 14 C 0.582 3.418 15 O -0.529 6.529 16 C -0.232 4.232 17 C 0.109 3.891 18 N -0.403 5.403 19 C -0.057 4.057 20 C 0.045 3.955 21 C -0.068 4.068 22 N -0.458 5.458 23 C 0.141 3.859 24 S 0.219 5.781 25 H 0.025 0.975 26 H 0.051 0.949 27 H 0.036 0.964 28 H 0.034 0.966 29 H 0.102 0.898 30 H 0.266 0.734 31 H 0.388 0.612 32 H 0.194 0.806 33 H 0.184 0.816 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.476 7.406 -13.158 17.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.168 4.168 3 C 0.170 3.830 4 H 0.072 0.928 5 C -0.577 4.577 6 H 0.081 0.919 7 C -0.135 4.135 8 N -0.518 5.518 9 Si 0.730 3.270 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.200 1.200 13 N -0.339 5.339 14 C 0.364 3.636 15 O -0.408 6.408 16 C -0.354 4.354 17 C -0.025 4.025 18 N -0.081 5.081 19 C -0.189 4.189 20 C -0.085 4.085 21 C -0.126 4.126 22 N -0.183 5.183 23 C -0.225 4.225 24 S 0.470 5.530 25 H 0.044 0.956 26 H 0.070 0.930 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.120 0.880 30 H 0.076 0.924 31 H 0.221 0.779 32 H 0.211 0.789 33 H 0.202 0.798 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.190 6.870 -13.210 16.993 hybrid contribution -0.662 0.391 0.794 1.105 sum -8.853 7.261 -12.416 16.889 Atomic orbital electron populations 1.21859 0.98318 0.98358 1.01129 1.21962 0.92644 0.99490 1.02665 1.18935 0.94629 0.89311 0.80078 0.92765 1.21160 0.90371 1.39753 1.06454 0.91941 1.24869 0.98785 0.94588 0.95238 1.69875 1.35378 1.37329 1.09233 0.86485 0.84554 0.78434 0.77540 1.20083 1.21082 1.20037 1.46469 1.13475 1.54885 1.19045 1.16552 0.83615 0.79237 0.84185 1.90832 1.51469 1.60156 1.38331 1.24049 0.98486 1.11057 1.01841 1.20549 0.99535 0.95851 0.86535 1.43634 1.14308 1.39595 1.10533 1.22588 0.96460 1.06932 0.92878 1.20832 0.91303 1.01406 0.94992 1.20113 0.98812 0.98932 0.94715 1.70504 1.15308 1.14935 1.17563 1.26572 0.94549 1.08629 0.92707 1.84908 1.09424 1.57527 1.01132 0.95553 0.93004 0.94464 0.94730 0.87952 0.92361 0.77918 0.78871 0.79841 0.90724 0.90592 0.90712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 8.51 37.16 0.32 -2.63 16 2 C -0.13 -2.99 5.45 -26.73 -0.15 -3.14 16 3 C 0.27 6.50 2.24 -69.09 -0.15 6.34 16 4 H 0.05 1.49 7.58 -51.93 -0.39 1.10 16 5 C -0.54 -13.69 8.73 -34.44 -0.30 -13.99 16 6 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 7 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 8 N -0.88 -23.82 11.30 55.43 0.63 -23.19 16 9 Si 0.90 20.05 29.54 -169.99 -5.02 15.03 16 10 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 11 H -0.29 -6.34 7.11 56.52 0.40 -5.93 16 12 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 13 N -0.69 -13.76 5.02 -56.19 -0.28 -14.04 16 14 C 0.58 10.96 6.36 -12.77 -0.08 10.88 16 15 O -0.53 -11.33 13.88 5.22 0.07 -11.26 16 16 C -0.23 -3.54 6.34 -37.91 -0.24 -3.78 16 17 C 0.11 1.48 10.94 -17.41 -0.19 1.29 16 18 N -0.40 -5.44 3.14 -63.52 -0.20 -5.64 16 19 C -0.06 -0.64 11.92 -15.65 -0.19 -0.83 16 20 C 0.04 0.54 7.05 -83.08 -0.59 -0.05 16 21 C -0.07 -0.52 10.41 36.01 0.37 -0.14 16 22 N -0.46 -6.88 11.32 -9.73 -0.11 -6.99 16 23 C 0.14 2.10 8.92 -88.51 -0.79 1.31 16 24 S 0.22 3.02 22.41 -107.50 -2.41 0.61 16 25 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.05 1.16 7.84 -51.93 -0.41 0.75 16 27 H 0.04 0.76 5.64 -51.93 -0.29 0.47 16 28 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.10 2.63 5.96 -51.93 -0.31 2.32 16 30 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 31 H 0.39 6.88 7.64 -40.82 -0.31 6.57 16 32 H 0.19 2.28 7.97 -52.48 -0.42 1.86 16 33 H 0.18 1.35 8.06 -52.49 -0.42 0.92 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 317.54 15.07 4.79 4.79 Total: -1.00 -29.87 317.54 -8.83 -38.70 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -4.21 Total: 5.04 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: -2.08 Total: -3.04 kcal Atomic # 7 Polarization: -49.89 SS G_CDS: 0.03 Total: -49.86 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: 0.07 Total: -11.26 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Atomic # 16 Polarization: 3.02 SS G_CDS: -2.41 Total: 0.61 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.87 -8.83 -38.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358054712.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.727 kcal (2) G-P(sol) polarization free energy of solvation -29.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds