Wall clock time and date at job start Tue Mar 31 2020 07:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47241 * 2 1 4 4 H 1.08994 * 109.47269 * 55.00202 * 3 2 1 5 5 C 1.50702 * 109.46842 * 174.99958 * 3 2 1 6 6 H 1.08002 * 120.00299 * 120.00437 * 5 3 2 7 7 C 1.37884 * 119.99942 * 299.71996 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48504 * 109.47196 * 60.00645 * 9 7 5 11 11 H 1.48504 * 109.46887 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47679 * 300.00280 * 9 7 5 13 13 N 1.46491 * 109.47168 * 294.99612 * 3 2 1 14 14 C 1.34776 * 120.00056 * 85.00588 * 13 3 2 15 15 O 1.21668 * 119.99898 * 359.97438 * 14 13 3 16 16 C 1.46867 * 120.00451 * 180.02562 * 14 13 3 17 17 C 1.33010 * 125.23109 * 179.97438 * 16 14 13 18 18 N 1.36237 * 116.11469 * 179.97438 * 17 16 14 19 19 C 1.39123 * 139.29616 * 179.97438 * 18 17 16 20 20 C 1.34221 * 107.10626 * 180.02562 * 19 18 17 21 21 C 1.50706 * 125.76421 * 180.02562 * 20 19 18 22 22 N 1.33947 * 108.46989 * 0.02562 * 20 19 18 23 23 C 1.32277 * 109.18631 * 0.02562 * 22 20 19 24 24 S 1.75810 * 125.22625 * 359.68673 * 16 14 13 25 25 H 1.08991 * 109.47795 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47374 * 300.00289 * 1 2 3 27 27 H 1.09003 * 109.46563 * 59.99857 * 1 2 3 28 28 H 1.09003 * 109.46905 * 239.99963 * 2 1 3 29 29 H 1.09003 * 109.46563 * 120.00143 * 2 1 3 30 30 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 31 31 H 0.97003 * 120.00221 * 265.00067 * 13 3 2 32 32 H 1.08004 * 121.94100 * 359.95029 * 17 16 14 33 33 H 1.07998 * 126.44335 * 0.02562 * 19 18 17 34 34 H 1.09002 * 109.47064 * 90.00466 * 21 20 19 35 35 H 1.08997 * 109.46916 * 209.99855 * 21 20 19 36 36 H 1.09000 * 109.47341 * 330.00141 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4441 0.1238 6 1 4.1473 1.8887 -0.6522 7 6 4.1430 0.8833 1.2308 8 7 3.4059 0.3419 2.1758 9 14 6.0043 0.8923 1.3879 10 1 6.4946 2.2940 1.3851 11 1 6.3969 0.2326 2.6592 12 1 6.6013 0.1568 0.2442 13 7 1.6526 2.0974 -1.2518 14 6 0.4353 2.6644 -1.3670 15 8 -0.3419 2.6319 -0.4315 16 6 0.0466 3.3206 -2.6221 17 6 -1.1237 3.9105 -2.8491 18 7 -1.2874 4.4628 -4.0837 19 6 -2.2499 5.1579 -4.8089 20 6 -1.7279 5.4071 -6.0201 21 6 -2.4167 6.1405 -7.1421 22 7 -0.4914 4.8939 -6.0631 23 6 -0.2173 4.3224 -4.9021 24 16 1.0594 3.4532 -4.0531 25 1 -0.3634 -1.0275 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3632 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8932 -0.5139 0.8900 30 1 3.8288 -0.0530 2.9544 31 1 2.2721 2.1230 -1.9977 32 1 -1.8993 3.9490 -2.0984 33 1 -3.2322 5.4432 -4.4625 34 1 -2.2016 7.2063 -7.0655 35 1 -2.0537 5.7645 -8.0987 36 1 -3.4928 5.9811 -7.0738 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358054712.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:29:28 Heat of formation + Delta-G solvation = 35.311753 kcal Electronic energy + Delta-G solvation = -20582.504000 eV Core-core repulsion = 17386.947227 eV Total energy + Delta-G solvation = -3195.556774 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.82616 -40.91619 -37.89137 -36.89083 -34.41496 -33.12821 -32.23508 -31.89473 -29.20069 -27.92071 -25.85419 -24.93347 -23.29493 -21.95224 -21.50854 -20.99429 -19.65358 -18.80372 -17.46164 -17.39002 -17.32372 -16.95215 -16.33223 -16.31852 -15.56789 -15.12862 -14.64262 -14.55756 -14.28676 -13.94446 -13.90832 -13.53309 -13.17666 -13.14617 -12.94234 -12.66525 -12.49152 -12.48487 -12.20774 -12.09293 -11.68184 -11.57411 -11.34353 -11.16235 -11.07275 -10.54396 -9.93811 -9.73460 -8.83856 -8.17225 -6.34326 -0.64622 -0.34567 0.36834 0.86115 1.25039 1.46964 1.47629 1.55410 1.67832 2.04227 2.29092 2.50085 3.12866 3.23458 3.52353 3.72631 4.03936 4.18724 4.33476 4.50221 4.57160 4.74314 4.82017 4.88008 4.89265 5.02247 5.05684 5.25499 5.40300 5.43509 5.46278 5.57718 5.69182 5.75311 5.84519 6.13827 6.55178 6.68519 6.74539 7.18576 7.39043 8.87866 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.030350 B = 0.003655 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.356548 B = 7659.916917 C = 8290.246442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.123 4.123 3 C 0.280 3.720 4 H 0.011 0.989 5 C -0.553 4.553 6 H 0.070 0.930 7 C 0.021 3.979 8 N -0.911 5.911 9 Si 0.967 3.033 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.266 1.266 13 N -0.694 5.694 14 C 0.588 3.412 15 O -0.559 6.559 16 C -0.256 4.256 17 C 0.136 3.864 18 N -0.407 5.407 19 C -0.048 4.048 20 C 0.030 3.970 21 C -0.065 4.065 22 N -0.484 5.484 23 C 0.115 3.885 24 S 0.232 5.768 25 H 0.047 0.953 26 H 0.032 0.968 27 H 0.042 0.958 28 H 0.041 0.959 29 H 0.076 0.924 30 H 0.266 0.734 31 H 0.399 0.601 32 H 0.213 0.787 33 H 0.225 0.775 34 H 0.086 0.914 35 H 0.071 0.929 36 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.341 8.308 -14.829 19.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.162 4.162 3 C 0.177 3.823 4 H 0.029 0.971 5 C -0.591 4.591 6 H 0.089 0.911 7 C -0.180 4.180 8 N -0.549 5.549 9 Si 0.792 3.208 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.190 1.190 13 N -0.341 5.341 14 C 0.372 3.628 15 O -0.441 6.441 16 C -0.379 4.379 17 C 0.001 3.999 18 N -0.086 5.086 19 C -0.178 4.178 20 C -0.099 4.099 21 C -0.123 4.123 22 N -0.210 5.210 23 C -0.251 4.251 24 S 0.483 5.517 25 H 0.066 0.934 26 H 0.051 0.949 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.094 0.906 30 H 0.075 0.925 31 H 0.234 0.766 32 H 0.230 0.770 33 H 0.242 0.758 34 H 0.104 0.896 35 H 0.090 0.910 36 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -9.058 7.793 -14.939 19.130 hybrid contribution -0.515 0.212 1.214 1.336 sum -9.574 8.006 -13.725 18.550 Atomic orbital electron populations 1.21705 0.96751 0.99475 1.00417 1.21816 0.93986 0.98791 1.01608 1.18516 0.93904 0.89392 0.80440 0.97117 1.21517 0.91296 1.39567 1.06767 0.91144 1.25688 1.03096 0.94244 0.94948 1.70017 1.37085 1.38094 1.09700 0.85475 0.79320 0.78468 0.77573 1.19713 1.21123 1.19033 1.46197 1.14457 1.55310 1.18171 1.16784 0.82641 0.78384 0.84973 1.90811 1.52130 1.61206 1.39912 1.23464 1.00008 1.13205 1.01209 1.20754 0.99029 0.93465 0.86660 1.43834 1.14670 1.39840 1.10272 1.23382 0.97228 1.04949 0.92207 1.21603 0.90454 1.01291 0.96570 1.20266 1.00072 0.98970 0.92964 1.70490 1.17104 1.15443 1.17921 1.26702 0.95307 1.09757 0.93291 1.84742 1.09042 1.57731 1.00192 0.93424 0.94916 0.93881 0.94013 0.90574 0.92454 0.76649 0.77041 0.75809 0.89567 0.90964 0.87866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.38 8.51 71.98 0.61 -4.76 16 2 C -0.12 -5.82 5.45 30.59 0.17 -5.65 16 3 C 0.28 13.78 2.24 44.25 0.10 13.88 16 4 H 0.01 0.63 7.58 -2.39 -0.02 0.61 16 5 C -0.55 -28.44 8.73 25.60 0.22 -28.22 16 6 H 0.07 3.41 7.74 -2.91 -0.02 3.39 16 7 C 0.02 1.10 5.30 84.66 0.45 1.55 16 8 N -0.91 -50.43 11.30 21.45 0.24 -50.19 16 9 Si 0.97 41.14 29.54 68.60 2.03 43.17 16 10 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 11 H -0.29 -12.08 7.11 99.48 0.71 -11.38 16 12 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 13 N -0.69 -27.94 5.02 -449.93 -2.26 -30.19 16 14 C 0.59 22.24 6.36 86.50 0.55 22.79 16 15 O -0.56 -24.32 13.88 -4.25 -0.06 -24.38 16 16 C -0.26 -7.65 6.34 23.36 0.15 -7.50 16 17 C 0.14 3.46 10.94 82.84 0.91 4.36 16 18 N -0.41 -10.10 3.14 -354.86 -1.12 -11.21 16 19 C -0.05 -0.91 11.92 82.62 0.99 0.08 16 20 C 0.03 0.64 7.05 41.32 0.29 0.93 16 21 C -0.07 -0.79 10.41 71.24 0.74 -0.05 16 22 N -0.48 -13.83 11.32 -184.69 -2.09 -15.92 16 23 C 0.11 3.25 8.92 179.61 1.60 4.85 16 24 S 0.23 6.25 22.41 -56.49 -1.27 4.99 16 25 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.03 1.48 7.84 -2.39 -0.02 1.47 16 27 H 0.04 1.76 5.64 -2.39 -0.01 1.74 16 28 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.08 4.03 5.96 -2.39 -0.01 4.02 16 30 H 0.27 14.03 8.31 -92.70 -0.77 13.26 16 31 H 0.40 14.19 7.64 -92.71 -0.71 13.48 16 32 H 0.21 4.51 7.97 -2.91 -0.02 4.49 16 33 H 0.23 2.19 8.06 -2.91 -0.02 2.16 16 34 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 Total: -1.00 -65.63 317.54 2.67 -62.96 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: 0.41 Total: 18.53 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: 6.77 Total: 2.25 kcal Atomic # 7 Polarization: -102.29 SS G_CDS: -5.22 Total: -107.51 kcal Atomic # 8 Polarization: -24.32 SS G_CDS: -0.06 Total: -24.38 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 2.03 Total: 43.17 kcal Atomic # 16 Polarization: 6.25 SS G_CDS: -1.27 Total: 4.99 kcal Total: -65.63 2.67 -62.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358054712.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.273 kcal (2) G-P(sol) polarization free energy of solvation -65.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds