Wall clock time and date at job start Tue Mar 31 2020 07:29:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46905 * 2 1 4 4 H 1.09002 * 109.46992 * 55.00122 * 3 2 1 5 5 C 1.50695 * 109.47012 * 174.99468 * 3 2 1 6 6 H 1.08006 * 120.00089 * 120.00077 * 5 3 2 7 7 C 1.37875 * 120.00189 * 299.99970 * 5 3 2 8 8 N 1.31512 * 120.00248 * 0.02562 * 7 5 3 9 9 Si 1.86807 * 119.99962 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47114 * 60.00481 * 9 7 5 11 11 H 1.48504 * 109.46771 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47124 * 299.99932 * 9 7 5 13 13 N 1.46496 * 109.47377 * 294.99756 * 3 2 1 14 14 C 1.34779 * 119.99957 * 85.00045 * 13 3 2 15 15 O 1.21279 * 119.99898 * 0.02562 * 14 13 3 16 16 C 1.50698 * 119.99881 * 180.02562 * 14 13 3 17 17 C 1.50698 * 109.47187 * 180.02562 * 16 14 13 18 18 C 1.30907 * 121.84133 * 84.97315 * 17 16 14 19 19 S 1.75785 * 109.82109 * 180.02562 * 18 17 16 20 20 C 1.76249 * 90.69696 * 0.02562 * 19 18 17 21 21 N 1.32361 * 141.95163 * 180.02562 * 20 19 18 22 22 C 1.33874 * 109.13546 * 179.97438 * 21 20 19 23 23 C 1.34330 * 108.38786 * 0.02562 * 22 21 20 24 24 N 1.35143 * 109.22650 * 0.02562 * 20 19 18 25 25 H 1.09007 * 109.46957 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47637 * 300.00315 * 1 2 3 27 27 H 1.09005 * 109.47044 * 60.00434 * 1 2 3 28 28 H 1.08999 * 109.47062 * 240.00057 * 2 1 3 29 29 H 1.09001 * 109.46594 * 119.99777 * 2 1 3 30 30 H 0.97003 * 120.00574 * 179.97438 * 8 7 5 31 31 H 0.96993 * 119.99873 * 265.00293 * 13 3 2 32 32 H 1.08997 * 109.47756 * 59.99218 * 16 14 13 33 33 H 1.09007 * 109.47103 * 299.99782 * 16 14 13 34 34 H 1.07999 * 125.09482 * 0.02562 * 18 17 16 35 35 H 1.08000 * 125.80396 * 180.02562 * 22 21 20 36 36 H 1.08001 * 126.43506 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5418 1.4443 0.1240 6 1 4.1472 1.8889 -0.6522 7 6 4.1431 0.8785 1.2281 8 7 3.4061 0.3367 2.1730 9 14 6.0049 0.8802 1.3814 10 1 6.5003 2.2800 1.3811 11 1 6.3977 0.2158 2.6501 12 1 6.5966 0.1453 0.2346 13 7 1.6525 2.0975 -1.2518 14 6 0.4352 2.6644 -1.3670 15 8 -0.3392 2.6327 -0.4341 16 6 0.0363 3.3377 -2.6549 17 6 -1.3611 3.8862 -2.5232 18 6 -1.5946 5.0623 -1.9979 19 16 -3.3229 5.3835 -2.0000 20 6 -3.6343 3.8201 -2.7518 21 7 -4.6188 3.0535 -3.1935 22 6 -4.1057 1.9152 -3.6765 23 6 -2.7703 1.9600 -3.5382 24 7 -2.4610 3.1781 -2.9462 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.8291 -0.0617 2.9497 31 1 2.2720 2.1231 -1.9977 32 1 0.0675 2.6131 -3.4685 33 1 0.7278 4.1530 -2.8679 34 1 -0.8388 5.7347 -1.6198 35 1 -4.6696 1.0996 -4.1045 36 1 -2.0689 1.1934 -3.8326 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358084589.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:29:46 Heat of formation + Delta-G solvation = 56.338877 kcal Electronic energy + Delta-G solvation = -21110.583447 eV Core-core repulsion = 17915.938478 eV Total energy + Delta-G solvation = -3194.644969 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.63821 -39.33404 -36.86855 -35.08950 -32.55787 -31.57250 -30.83705 -30.13655 -28.25738 -26.81122 -23.60950 -22.97637 -21.84141 -20.88195 -19.87199 -19.45710 -18.20861 -17.35083 -16.20295 -15.74758 -15.49802 -15.33852 -15.07012 -14.81571 -14.40753 -14.23523 -13.54861 -13.21543 -12.90033 -12.81320 -12.62914 -11.86892 -11.71498 -11.49399 -11.33324 -11.25465 -11.06451 -10.89374 -10.46386 -10.40855 -10.27058 -10.22196 -9.72912 -9.25025 -9.13993 -8.87208 -8.58380 -7.97018 -7.65603 -6.19944 -4.30447 0.87714 0.95049 1.58850 2.17933 2.55584 2.89843 3.17149 3.19830 3.25883 3.26306 3.93235 4.27283 4.33781 4.52897 4.87207 5.10420 5.11875 5.20920 5.23136 5.33434 5.49252 5.59744 6.06541 6.30404 6.35436 6.48463 6.56656 6.80959 6.93202 7.09810 7.25337 7.31655 7.51727 7.62133 7.68941 7.79725 8.08829 8.50617 8.66872 8.96542 9.37078 10.85201 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.029387 B = 0.003803 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.587850 B = 7360.271750 C = 7768.637113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.127 4.127 3 C 0.272 3.728 4 H 0.049 0.951 5 C -0.538 4.538 6 H 0.061 0.939 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.276 1.276 13 N -0.705 5.705 14 C 0.501 3.499 15 O -0.536 6.536 16 C -0.091 4.091 17 C 0.111 3.889 18 C -0.211 4.211 19 S 0.181 5.819 20 C 0.138 3.862 21 N -0.464 5.464 22 C 0.013 3.987 23 C -0.048 4.048 24 N -0.394 5.394 25 H 0.023 0.977 26 H 0.049 0.951 27 H 0.035 0.965 28 H 0.031 0.969 29 H 0.100 0.900 30 H 0.266 0.734 31 H 0.389 0.611 32 H 0.102 0.898 33 H 0.119 0.881 34 H 0.194 0.806 35 H 0.185 0.815 36 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.349 6.558 -11.967 15.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.067 0.933 5 C -0.576 4.576 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.353 5.353 14 C 0.284 3.716 15 O -0.414 6.414 16 C -0.134 4.134 17 C 0.001 3.999 18 C -0.348 4.348 19 S 0.431 5.569 20 C -0.228 4.228 21 N -0.188 5.188 22 C -0.137 4.137 23 C -0.181 4.181 24 N -0.072 5.072 25 H 0.042 0.958 26 H 0.068 0.932 27 H 0.054 0.946 28 H 0.050 0.950 29 H 0.118 0.882 30 H 0.076 0.924 31 H 0.221 0.779 32 H 0.120 0.880 33 H 0.137 0.863 34 H 0.212 0.788 35 H 0.202 0.798 36 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -9.446 7.684 -10.620 16.157 hybrid contribution 3.059 -1.571 -0.688 3.507 sum -6.387 6.114 -11.308 14.354 Atomic orbital electron populations 1.21820 0.98335 0.98065 1.01040 1.21944 0.92519 0.99812 1.02356 1.18804 0.94263 0.89148 0.80753 0.93270 1.21170 0.90582 1.39450 1.06409 0.92106 1.24884 0.98656 0.94701 0.95335 1.69877 1.35323 1.37275 1.09341 0.86511 0.84740 0.78343 0.77529 1.20153 1.21081 1.20143 1.46479 1.14234 1.55778 1.18768 1.19976 0.83252 0.80025 0.88393 1.90737 1.51192 1.59343 1.40104 1.20630 0.90698 1.02577 0.99535 1.18321 0.88553 0.91811 1.01253 1.24723 1.00608 1.00786 1.08682 1.84552 0.98771 1.07859 1.65689 1.26224 0.85119 1.01671 1.09772 1.70576 1.27840 1.03350 1.16999 1.22351 0.91120 0.96828 1.03354 1.22781 0.98303 0.88758 1.08256 1.43694 1.06165 1.14878 1.42501 0.95808 0.93203 0.94618 0.95032 0.88205 0.92404 0.77866 0.87980 0.86273 0.78850 0.79848 0.80307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 8.52 37.16 0.32 -2.64 16 2 C -0.13 -2.98 5.45 -26.73 -0.15 -3.13 16 3 C 0.27 6.46 2.24 -69.09 -0.15 6.31 16 4 H 0.05 1.38 7.58 -51.93 -0.39 0.98 16 5 C -0.54 -13.51 8.73 -34.44 -0.30 -13.81 16 6 H 0.06 1.45 7.74 -52.48 -0.41 1.04 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -24.02 11.29 55.43 0.63 -23.39 16 9 Si 0.90 19.90 29.54 -169.99 -5.02 14.88 16 10 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 11 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 12 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 13 N -0.70 -13.11 5.02 -54.94 -0.28 -13.39 16 14 C 0.50 8.76 6.39 -10.99 -0.07 8.69 16 15 O -0.54 -11.66 13.17 5.56 0.07 -11.58 16 16 C -0.09 -1.11 6.00 -29.04 -0.17 -1.28 16 17 C 0.11 1.51 5.24 -81.75 -0.43 1.08 16 18 C -0.21 -2.56 10.81 29.04 0.31 -2.25 16 19 S 0.18 2.25 23.37 -107.50 -2.51 -0.26 16 20 C 0.14 2.15 8.93 -88.71 -0.79 1.35 16 21 N -0.46 -7.45 11.33 -13.56 -0.15 -7.60 16 22 C 0.01 0.17 11.82 -18.04 -0.21 -0.04 16 23 C -0.05 -0.63 11.97 -15.71 -0.19 -0.82 16 24 N -0.39 -5.81 3.19 -59.54 -0.19 -6.00 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.05 1.18 7.85 -51.93 -0.41 0.77 16 27 H 0.03 0.75 5.65 -51.93 -0.29 0.46 16 28 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.10 2.62 5.95 -51.93 -0.31 2.31 16 30 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 31 H 0.39 6.09 8.54 -40.82 -0.35 5.74 16 32 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.12 1.06 8.13 -51.93 -0.42 0.64 16 34 H 0.19 1.81 8.06 -52.49 -0.42 1.39 16 35 H 0.18 1.74 8.06 -52.49 -0.42 1.32 16 36 H 0.18 1.85 8.06 -52.49 -0.42 1.43 16 LS Contribution 317.96 15.07 4.79 4.79 Total: -1.00 -32.15 317.96 -8.84 -40.99 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -4.25 Total: 6.46 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: -1.93 Total: -4.88 kcal Atomic # 7 Polarization: -50.39 SS G_CDS: 0.01 Total: -50.39 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: 0.07 Total: -11.58 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Atomic # 16 Polarization: 2.25 SS G_CDS: -2.51 Total: -0.26 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.15 -8.84 -40.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358084589.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.331 kcal (2) G-P(sol) polarization free energy of solvation -32.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds