Wall clock time and date at job start Tue Mar 31 2020 07:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46905 * 2 1 4 4 H 1.09002 * 109.46992 * 55.00122 * 3 2 1 5 5 C 1.50695 * 109.47012 * 174.99468 * 3 2 1 6 6 H 1.08006 * 120.00089 * 120.00077 * 5 3 2 7 7 C 1.37875 * 120.00189 * 299.99970 * 5 3 2 8 8 N 1.31512 * 120.00248 * 0.02562 * 7 5 3 9 9 Si 1.86807 * 119.99962 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47114 * 60.00481 * 9 7 5 11 11 H 1.48504 * 109.46771 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47124 * 299.99932 * 9 7 5 13 13 N 1.46496 * 109.47377 * 294.99756 * 3 2 1 14 14 C 1.34779 * 119.99957 * 85.00045 * 13 3 2 15 15 O 1.21279 * 119.99898 * 0.02562 * 14 13 3 16 16 C 1.50698 * 119.99881 * 180.02562 * 14 13 3 17 17 C 1.50698 * 109.47187 * 180.02562 * 16 14 13 18 18 C 1.30907 * 121.84133 * 84.97315 * 17 16 14 19 19 S 1.75785 * 109.82109 * 180.02562 * 18 17 16 20 20 C 1.76249 * 90.69696 * 0.02562 * 19 18 17 21 21 N 1.32361 * 141.95163 * 180.02562 * 20 19 18 22 22 C 1.33874 * 109.13546 * 179.97438 * 21 20 19 23 23 C 1.34330 * 108.38786 * 0.02562 * 22 21 20 24 24 N 1.35143 * 109.22650 * 0.02562 * 20 19 18 25 25 H 1.09007 * 109.46957 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47637 * 300.00315 * 1 2 3 27 27 H 1.09005 * 109.47044 * 60.00434 * 1 2 3 28 28 H 1.08999 * 109.47062 * 240.00057 * 2 1 3 29 29 H 1.09001 * 109.46594 * 119.99777 * 2 1 3 30 30 H 0.97003 * 120.00574 * 179.97438 * 8 7 5 31 31 H 0.96993 * 119.99873 * 265.00293 * 13 3 2 32 32 H 1.08997 * 109.47756 * 59.99218 * 16 14 13 33 33 H 1.09007 * 109.47103 * 299.99782 * 16 14 13 34 34 H 1.07999 * 125.09482 * 0.02562 * 18 17 16 35 35 H 1.08000 * 125.80396 * 180.02562 * 22 21 20 36 36 H 1.08001 * 126.43506 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5418 1.4443 0.1240 6 1 4.1472 1.8889 -0.6522 7 6 4.1431 0.8785 1.2281 8 7 3.4061 0.3367 2.1730 9 14 6.0049 0.8802 1.3814 10 1 6.5003 2.2800 1.3811 11 1 6.3977 0.2158 2.6501 12 1 6.5966 0.1453 0.2346 13 7 1.6525 2.0975 -1.2518 14 6 0.4352 2.6644 -1.3670 15 8 -0.3392 2.6327 -0.4341 16 6 0.0363 3.3377 -2.6549 17 6 -1.3611 3.8862 -2.5232 18 6 -1.5946 5.0623 -1.9979 19 16 -3.3229 5.3835 -2.0000 20 6 -3.6343 3.8201 -2.7518 21 7 -4.6188 3.0535 -3.1935 22 6 -4.1057 1.9152 -3.6765 23 6 -2.7703 1.9600 -3.5382 24 7 -2.4610 3.1781 -2.9462 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.8291 -0.0617 2.9497 31 1 2.2720 2.1231 -1.9977 32 1 0.0675 2.6131 -3.4685 33 1 0.7278 4.1530 -2.8679 34 1 -0.8388 5.7347 -1.6198 35 1 -4.6696 1.0996 -4.1045 36 1 -2.0689 1.1934 -3.8326 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358084589.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:29:45 Heat of formation + Delta-G solvation = 35.901619 kcal Electronic energy + Delta-G solvation = -21111.469673 eV Core-core repulsion = 17915.938478 eV Total energy + Delta-G solvation = -3195.531195 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.64304 -40.77362 -37.99440 -36.77610 -34.31646 -33.12285 -32.08490 -31.24818 -29.48564 -28.46579 -25.14432 -24.37048 -22.89693 -22.30351 -21.26472 -20.88399 -19.28456 -18.86734 -17.65631 -17.23364 -16.77954 -16.63864 -16.30597 -16.05307 -15.71919 -15.47395 -14.85025 -14.62798 -14.40367 -14.14385 -13.72379 -13.57210 -13.18087 -13.01925 -12.90269 -12.72736 -12.64675 -12.24518 -12.19573 -12.04234 -11.60440 -11.47361 -11.28846 -11.06240 -10.73370 -10.50965 -9.87737 -9.63404 -8.64990 -8.15234 -6.32766 -0.11266 -0.03662 0.63010 1.14107 1.46603 1.47387 1.55227 1.60300 1.82800 1.88848 2.37418 2.69101 3.14757 3.31201 3.56240 3.93629 4.10503 4.22662 4.32784 4.41310 4.46089 4.53836 4.55752 4.66392 4.74062 5.03753 5.09476 5.23881 5.41470 5.52346 5.55740 5.62736 5.78897 5.83800 5.92823 6.17217 6.67448 6.76194 6.98324 7.35091 7.59397 8.89571 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.029387 B = 0.003803 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.587850 B = 7360.271750 C = 7768.637113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.121 4.121 3 C 0.281 3.719 4 H -0.003 1.003 5 C -0.547 4.547 6 H 0.075 0.925 7 C 0.016 3.984 8 N -0.916 5.916 9 Si 0.967 3.033 10 H -0.270 1.270 11 H -0.290 1.290 12 H -0.264 1.264 13 N -0.701 5.701 14 C 0.499 3.501 15 O -0.582 6.582 16 C -0.074 4.074 17 C 0.085 3.915 18 C -0.204 4.204 19 S 0.199 5.801 20 C 0.104 3.896 21 N -0.497 5.497 22 C 0.003 3.997 23 C -0.055 4.055 24 N -0.399 5.399 25 H 0.041 0.959 26 H 0.020 0.980 27 H 0.044 0.956 28 H 0.043 0.957 29 H 0.069 0.931 30 H 0.264 0.736 31 H 0.407 0.593 32 H 0.129 0.871 33 H 0.160 0.840 34 H 0.221 0.779 35 H 0.213 0.787 36 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.033 7.008 -14.007 16.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.160 4.160 3 C 0.177 3.823 4 H 0.015 0.985 5 C -0.585 4.585 6 H 0.093 0.907 7 C -0.184 4.184 8 N -0.555 5.555 9 Si 0.792 3.208 10 H -0.195 1.195 11 H -0.216 1.216 12 H -0.189 1.189 13 N -0.350 5.350 14 C 0.285 3.715 15 O -0.463 6.463 16 C -0.116 4.116 17 C -0.025 4.025 18 C -0.341 4.341 19 S 0.449 5.551 20 C -0.262 4.262 21 N -0.222 5.222 22 C -0.146 4.146 23 C -0.188 4.188 24 N -0.078 5.078 25 H 0.060 0.940 26 H 0.039 0.961 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.242 0.758 32 H 0.147 0.853 33 H 0.177 0.823 34 H 0.238 0.762 35 H 0.230 0.770 36 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -8.121 8.156 -12.713 17.149 hybrid contribution 2.574 -1.673 -0.034 3.070 sum -5.547 6.483 -12.747 15.339 Atomic orbital electron populations 1.21640 0.97210 0.98831 0.99979 1.21789 0.93382 0.99506 1.01301 1.18305 0.93519 0.88941 0.81514 0.98493 1.21570 0.91461 1.38836 1.06632 0.90663 1.25751 1.03088 0.94458 0.95126 1.70045 1.37120 1.38388 1.09917 0.85469 0.79383 0.78482 0.77430 1.19522 1.21631 1.18910 1.46181 1.15419 1.55839 1.17611 1.20843 0.81925 0.78928 0.89760 1.90730 1.52335 1.60795 1.42424 1.20586 0.90543 1.04004 0.96478 1.18621 0.88897 0.92390 1.02634 1.25207 1.00947 1.00872 1.07065 1.84432 0.99139 1.06555 1.64963 1.26696 0.85618 1.02972 1.10869 1.70528 1.28918 1.04633 1.18143 1.22945 0.91743 0.96851 1.03067 1.23339 0.98926 0.88857 1.07688 1.43930 1.06259 1.15246 1.42402 0.94003 0.96125 0.93711 0.93841 0.91307 0.92723 0.75775 0.85302 0.82268 0.76229 0.77000 0.77668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.22 8.52 71.98 0.61 -4.61 16 2 C -0.12 -5.68 5.45 30.60 0.17 -5.52 16 3 C 0.28 13.42 2.24 44.24 0.10 13.52 16 4 H 0.00 -0.16 7.58 -2.39 -0.02 -0.18 16 5 C -0.55 -27.15 8.73 25.60 0.22 -26.93 16 6 H 0.08 3.43 7.74 -2.91 -0.02 3.41 16 7 C 0.02 0.82 5.29 84.65 0.45 1.27 16 8 N -0.92 -51.12 11.29 21.45 0.24 -50.88 16 9 Si 0.97 40.35 29.54 68.60 2.03 42.37 16 10 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 11 H -0.29 -12.26 7.11 99.48 0.71 -11.55 16 12 H -0.26 -10.46 7.11 99.48 0.71 -9.76 16 13 N -0.70 -24.92 5.02 -446.11 -2.24 -27.16 16 14 C 0.50 16.58 6.39 87.66 0.56 17.14 16 15 O -0.58 -25.22 13.17 -3.03 -0.04 -25.26 16 16 C -0.07 -1.53 6.00 29.10 0.17 -1.35 16 17 C 0.08 2.10 5.24 41.73 0.22 2.32 16 18 C -0.20 -4.52 10.81 67.88 0.73 -3.79 16 19 S 0.20 4.75 23.37 -56.49 -1.32 3.43 16 20 C 0.10 3.16 8.93 179.68 1.60 4.76 16 21 N -0.50 -15.82 11.33 -196.81 -2.23 -18.05 16 22 C 0.00 0.08 11.82 83.49 0.99 1.06 16 23 C -0.06 -1.36 11.97 82.67 0.99 -0.37 16 24 N -0.40 -11.17 3.19 -342.29 -1.09 -12.26 16 25 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16 26 H 0.02 0.98 7.85 -2.39 -0.02 0.96 16 27 H 0.04 1.85 5.65 -2.38 -0.01 1.83 16 28 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.07 3.70 5.95 -2.39 -0.01 3.69 16 30 H 0.26 14.08 8.31 -92.71 -0.77 13.31 16 31 H 0.41 11.53 8.54 -92.71 -0.79 10.74 16 32 H 0.13 2.03 8.14 -2.39 -0.02 2.02 16 33 H 0.16 2.04 8.13 -2.38 -0.02 2.02 16 34 H 0.22 3.45 8.06 -2.91 -0.02 3.43 16 35 H 0.21 3.68 8.06 -2.91 -0.02 3.66 16 36 H 0.21 3.65 8.06 -2.91 -0.02 3.62 16 Total: -1.00 -72.33 317.96 2.49 -69.84 By element: Atomic # 1 Polarization: 20.15 SS G_CDS: 0.32 Total: 20.47 kcal Atomic # 6 Polarization: -9.32 SS G_CDS: 6.82 Total: -2.50 kcal Atomic # 7 Polarization: -103.03 SS G_CDS: -5.32 Total: -108.35 kcal Atomic # 8 Polarization: -25.22 SS G_CDS: -0.04 Total: -25.26 kcal Atomic # 14 Polarization: 40.35 SS G_CDS: 2.03 Total: 42.37 kcal Atomic # 16 Polarization: 4.75 SS G_CDS: -1.32 Total: 3.43 kcal Total: -72.33 2.49 -69.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358084589.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.737 kcal (2) G-P(sol) polarization free energy of solvation -72.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds