Wall clock time and date at job start Tue Mar 31 2020 07:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50703 * 119.99776 * 2 1 4 4 N 1.46500 * 109.46699 * 125.45587 * 3 2 1 5 5 C 1.46501 * 119.99722 * 85.12970 * 4 3 2 6 6 C 1.50701 * 109.47512 * 97.09718 * 5 4 3 7 7 H 1.07995 * 119.99955 * 0.02562 * 6 5 4 8 8 C 1.37874 * 120.00226 * 179.97438 * 6 5 4 9 9 N 1.31518 * 119.99808 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00281 * 179.97438 * 8 6 5 11 11 H 1.48508 * 109.46655 * 60.00049 * 10 8 6 12 12 H 1.48503 * 109.47263 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.47130 * 300.00491 * 10 8 6 14 14 C 1.34773 * 120.00384 * 265.11947 * 4 3 2 15 15 O 1.21628 * 120.00079 * 356.77361 * 14 4 3 16 16 C 1.47173 * 120.00316 * 176.76721 * 14 4 3 17 17 S 1.77338 * 128.47451 * 7.51092 * 16 14 4 18 18 N 1.56629 * 95.28277 * 179.97438 * 17 16 14 19 19 N 1.27334 * 109.74315 * 0.02562 * 18 17 16 20 20 C 1.31238 * 120.03969 * 359.71548 * 19 18 17 21 21 C 1.50695 * 124.06289 * 180.34120 * 20 19 18 22 22 C 1.53001 * 117.49658 * 8.91619 * 21 20 19 23 23 C 1.53008 * 117.49800 * 300.26114 * 21 20 19 24 24 H 1.08000 * 119.99911 * 5.01607 * 1 2 3 25 25 H 1.08000 * 119.99835 * 185.00640 * 1 2 3 26 26 H 1.08001 * 120.00009 * 179.97438 * 2 1 3 27 27 H 1.09000 * 109.47376 * 5.46269 * 3 2 1 28 28 H 1.08993 * 109.47415 * 245.45778 * 3 2 1 29 29 H 1.09008 * 109.46841 * 217.09714 * 5 4 3 30 30 H 1.09000 * 109.46982 * 337.09612 * 5 4 3 31 31 H 0.96998 * 119.99757 * 179.97438 * 9 8 6 32 32 H 1.09002 * 115.55413 * 154.58778 * 21 20 19 33 33 H 1.09002 * 117.50068 * 0.02562 * 22 21 20 34 34 H 1.09002 * 117.50136 * 145.01687 * 22 21 20 35 35 H 1.08990 * 117.49649 * 214.97648 * 23 21 20 36 36 H 1.08997 * 117.49309 * 359.97241 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 3.0015 1.3274 1.1251 5 6 4.3295 0.7253 0.9835 6 6 5.3344 1.7976 0.6497 7 1 5.0157 2.8250 0.5530 8 6 6.6607 1.4674 0.4686 9 7 7.0490 0.2165 0.5878 10 14 7.9061 2.7964 0.0540 11 1 7.9332 3.8062 1.1427 12 1 9.2525 2.1862 -0.0881 13 1 7.5226 3.4537 -1.2213 14 6 2.6428 1.9019 2.2903 15 8 1.5633 2.4534 2.3895 16 6 3.5573 1.8618 3.4428 17 16 5.2345 1.2888 3.5010 18 7 5.4366 1.5890 5.0249 19 7 4.3679 2.0811 5.5118 20 6 3.3204 2.2664 4.7433 21 6 2.0149 2.8478 5.2216 22 6 1.9784 3.4347 6.6341 23 6 1.2783 2.1059 6.3388 24 1 -0.5400 0.9317 -0.0818 25 1 -0.5400 -0.9318 0.0816 26 1 1.8500 -0.9353 0.0004 27 1 1.3592 2.1313 0.0978 28 1 2.6148 1.4064 -0.9347 29 1 4.6111 0.2422 1.9193 30 1 4.3093 -0.0153 0.1840 31 1 7.9820 -0.0159 0.4600 32 1 1.4099 3.3364 4.4578 33 1 2.8987 3.4007 7.2173 34 1 1.3491 4.3092 6.7997 35 1 0.1888 2.1067 6.3101 36 1 1.7377 1.1971 6.7274 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359403204.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:33:39 Heat of formation + Delta-G solvation = 86.361619 kcal Electronic energy + Delta-G solvation = -21438.327840 eV Core-core repulsion = 18244.984755 eV Total energy + Delta-G solvation = -3193.343085 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.25006 -39.07705 -36.60946 -35.62430 -33.85537 -32.45473 -31.04824 -27.87080 -27.26860 -25.38607 -23.46922 -23.00473 -22.13714 -21.17316 -19.62536 -18.59555 -17.66980 -16.93808 -16.35162 -15.97540 -15.40342 -15.07171 -14.69381 -14.51297 -14.24274 -13.82002 -13.38431 -12.89656 -12.71453 -12.50976 -12.08214 -11.62592 -11.54192 -11.32163 -11.26678 -11.12116 -11.03851 -10.95293 -10.72483 -10.41966 -10.09843 -10.07812 -9.49739 -9.15874 -9.12433 -8.88061 -8.85571 -8.61686 -8.01100 -6.50398 -4.56617 0.55012 1.74911 2.36782 2.50808 2.58025 3.09475 3.15584 3.18261 3.60430 3.76038 4.10126 4.18702 4.55943 4.83782 4.88911 5.15278 5.20025 5.24627 5.31885 5.46147 5.68490 5.82285 5.82989 5.99922 6.03772 6.17502 6.22165 6.30603 6.35769 6.52335 6.71415 6.81399 6.97034 7.19484 7.45497 7.62654 7.96248 8.44177 8.49949 8.70984 9.07036 10.53899 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.012249 B = 0.007803 C = 0.005313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2285.347141 B = 3587.278873 C = 5269.143746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.164 4.164 3 C 0.146 3.854 4 N -0.588 5.588 5 C 0.230 3.770 6 C -0.542 4.542 7 H 0.070 0.930 8 C 0.076 3.924 9 N -0.871 5.871 10 Si 0.891 3.109 11 H -0.271 1.271 12 H -0.280 1.280 13 H -0.270 1.270 14 C 0.606 3.394 15 O -0.551 6.551 16 C -0.321 4.321 17 S 0.587 5.413 18 N -0.355 5.355 19 N -0.280 5.280 20 C 0.105 3.895 21 C -0.073 4.073 22 C -0.166 4.166 23 C -0.162 4.162 24 H 0.096 0.904 25 H 0.094 0.906 26 H 0.109 0.891 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.032 0.968 30 H 0.058 0.942 31 H 0.274 0.726 32 H 0.140 0.860 33 H 0.104 0.896 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.620 0.144 2.031 7.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.183 4.183 3 C 0.023 3.977 4 N -0.318 5.318 5 C 0.107 3.893 6 C -0.585 4.585 7 H 0.088 0.912 8 C -0.131 4.131 9 N -0.507 5.507 10 Si 0.718 3.282 11 H -0.196 1.196 12 H -0.205 1.205 13 H -0.195 1.195 14 C 0.394 3.606 15 O -0.432 6.432 16 C -0.461 4.461 17 S 0.730 5.270 18 N -0.334 5.334 19 N -0.141 5.141 20 C -0.045 4.045 21 C -0.095 4.095 22 C -0.203 4.203 23 C -0.200 4.200 24 H 0.115 0.885 25 H 0.112 0.888 26 H 0.127 0.873 27 H 0.104 0.896 28 H 0.106 0.894 29 H 0.048 0.952 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.157 0.843 33 H 0.122 0.878 34 H 0.114 0.886 35 H 0.117 0.883 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.077 -0.243 2.710 6.659 hybrid contribution -0.407 0.934 -0.590 1.178 sum -6.484 0.691 2.120 6.857 Atomic orbital electron populations 1.23771 0.95817 1.01606 1.01041 1.23390 0.96194 0.99306 0.99385 1.20434 0.92168 0.95346 0.89712 1.47960 1.16775 1.56089 1.10969 1.19720 0.77298 0.94748 0.97499 1.21540 0.92540 0.94975 1.49418 0.91206 1.24940 0.98272 0.95859 0.94075 1.69880 1.18129 1.16697 1.45952 0.86610 0.80163 0.81726 0.79747 1.19638 1.20487 1.19517 1.16469 0.84441 0.78498 0.81236 1.90665 1.23089 1.45959 1.83444 1.27551 1.02903 1.16414 0.99187 1.84766 1.01188 1.38911 1.02099 1.78114 1.20669 1.19073 1.15501 1.70625 0.95491 1.15846 1.32162 1.21699 0.95715 0.98861 0.88266 1.20509 0.92134 1.04014 0.92828 1.23002 1.03096 0.96617 0.97625 1.22943 0.99067 0.96420 1.01586 0.88542 0.88801 0.87330 0.89632 0.89351 0.95179 0.92430 0.91619 0.84266 0.87778 0.88568 0.88334 0.88890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.43 14.31 29.01 0.42 -2.01 16 2 C -0.16 -2.43 9.84 -36.03 -0.35 -2.79 16 3 C 0.15 2.44 5.89 -5.19 -0.03 2.41 16 4 N -0.59 -11.61 2.46 -177.80 -0.44 -12.05 16 5 C 0.23 4.89 4.77 -5.19 -0.02 4.87 16 6 C -0.54 -12.47 7.32 -34.44 -0.25 -12.72 16 7 H 0.07 1.66 7.81 -52.49 -0.41 1.25 16 8 C 0.08 1.77 5.26 -17.82 -0.09 1.67 16 9 N -0.87 -20.86 13.29 55.43 0.74 -20.13 16 10 Si 0.89 18.79 29.54 -169.99 -5.02 13.77 16 11 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 12 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 13 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 14 C 0.61 12.69 7.59 -12.63 -0.10 12.59 16 15 O -0.55 -11.85 14.44 5.25 0.08 -11.78 16 16 C -0.32 -6.69 6.47 -35.95 -0.23 -6.92 16 17 S 0.59 12.28 17.44 -107.50 -1.87 10.41 16 18 N -0.35 -7.57 12.51 60.35 0.75 -6.81 16 19 N -0.28 -5.80 10.95 33.42 0.37 -5.44 16 20 C 0.11 2.09 6.59 -82.84 -0.55 1.55 16 21 C -0.07 -1.24 5.70 -91.77 -0.52 -1.76 16 22 C -0.17 -2.31 10.11 -26.69 -0.27 -2.58 16 23 C -0.16 -2.27 10.24 -26.69 -0.27 -2.54 16 24 H 0.10 1.22 7.86 -52.49 -0.41 0.81 16 25 H 0.09 1.07 8.06 -52.49 -0.42 0.65 16 26 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 27 H 0.09 1.43 6.90 -51.93 -0.36 1.07 16 28 H 0.09 1.40 8.11 -51.93 -0.42 0.98 16 29 H 0.03 0.68 4.47 -24.45 -0.11 0.57 16 30 H 0.06 1.24 8.02 -51.93 -0.42 0.83 16 31 H 0.27 6.31 8.31 -40.82 -0.34 5.97 16 32 H 0.14 2.44 6.55 -51.93 -0.34 2.10 16 33 H 0.10 1.53 7.80 -51.93 -0.41 1.13 16 34 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 322.40 15.07 4.86 4.86 Total: -1.00 -25.70 322.40 -6.94 -32.65 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -4.12 Total: 2.75 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: -2.28 Total: -8.23 kcal Atomic # 7 Polarization: -45.84 SS G_CDS: 1.42 Total: -44.42 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: 0.08 Total: -11.78 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.02 Total: 13.77 kcal Atomic # 16 Polarization: 12.28 SS G_CDS: -1.87 Total: 10.41 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -25.70 -6.94 -32.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359403204.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.010 kcal (2) G-P(sol) polarization free energy of solvation -25.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds