Wall clock time and date at job start Tue Mar 31 2020 07:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50703 * 119.99776 * 2 1 4 4 N 1.46500 * 109.46699 * 125.45587 * 3 2 1 5 5 C 1.46501 * 119.99722 * 85.12970 * 4 3 2 6 6 C 1.50701 * 109.47512 * 97.09718 * 5 4 3 7 7 H 1.07995 * 119.99955 * 0.02562 * 6 5 4 8 8 C 1.37874 * 120.00226 * 179.97438 * 6 5 4 9 9 N 1.31518 * 119.99808 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00281 * 179.97438 * 8 6 5 11 11 H 1.48508 * 109.46655 * 60.00049 * 10 8 6 12 12 H 1.48503 * 109.47263 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.47130 * 300.00491 * 10 8 6 14 14 C 1.34773 * 120.00384 * 265.11947 * 4 3 2 15 15 O 1.21628 * 120.00079 * 356.77361 * 14 4 3 16 16 C 1.47173 * 120.00316 * 176.76721 * 14 4 3 17 17 S 1.77338 * 128.47451 * 7.51092 * 16 14 4 18 18 N 1.56629 * 95.28277 * 179.97438 * 17 16 14 19 19 N 1.27334 * 109.74315 * 0.02562 * 18 17 16 20 20 C 1.31238 * 120.03969 * 359.71548 * 19 18 17 21 21 C 1.50695 * 124.06289 * 180.34120 * 20 19 18 22 22 C 1.53001 * 117.49658 * 8.91619 * 21 20 19 23 23 C 1.53008 * 117.49800 * 300.26114 * 21 20 19 24 24 H 1.08000 * 119.99911 * 5.01607 * 1 2 3 25 25 H 1.08000 * 119.99835 * 185.00640 * 1 2 3 26 26 H 1.08001 * 120.00009 * 179.97438 * 2 1 3 27 27 H 1.09000 * 109.47376 * 5.46269 * 3 2 1 28 28 H 1.08993 * 109.47415 * 245.45778 * 3 2 1 29 29 H 1.09008 * 109.46841 * 217.09714 * 5 4 3 30 30 H 1.09000 * 109.46982 * 337.09612 * 5 4 3 31 31 H 0.96998 * 119.99757 * 179.97438 * 9 8 6 32 32 H 1.09002 * 115.55413 * 154.58778 * 21 20 19 33 33 H 1.09002 * 117.50068 * 0.02562 * 22 21 20 34 34 H 1.09002 * 117.50136 * 145.01687 * 22 21 20 35 35 H 1.08990 * 117.49649 * 214.97648 * 23 21 20 36 36 H 1.08997 * 117.49309 * 359.97241 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 3.0015 1.3274 1.1251 5 6 4.3295 0.7253 0.9835 6 6 5.3344 1.7976 0.6497 7 1 5.0157 2.8250 0.5530 8 6 6.6607 1.4674 0.4686 9 7 7.0490 0.2165 0.5878 10 14 7.9061 2.7964 0.0540 11 1 7.9332 3.8062 1.1427 12 1 9.2525 2.1862 -0.0881 13 1 7.5226 3.4537 -1.2213 14 6 2.6428 1.9019 2.2903 15 8 1.5633 2.4534 2.3895 16 6 3.5573 1.8618 3.4428 17 16 5.2345 1.2888 3.5010 18 7 5.4366 1.5890 5.0249 19 7 4.3679 2.0811 5.5118 20 6 3.3204 2.2664 4.7433 21 6 2.0149 2.8478 5.2216 22 6 1.9784 3.4347 6.6341 23 6 1.2783 2.1059 6.3388 24 1 -0.5400 0.9317 -0.0818 25 1 -0.5400 -0.9318 0.0816 26 1 1.8500 -0.9353 0.0004 27 1 1.3592 2.1313 0.0978 28 1 2.6148 1.4064 -0.9347 29 1 4.6111 0.2422 1.9193 30 1 4.3093 -0.0153 0.1840 31 1 7.9820 -0.0159 0.4600 32 1 1.4099 3.3364 4.4578 33 1 2.8987 3.4007 7.2173 34 1 1.3491 4.3092 6.7997 35 1 0.1888 2.1067 6.3101 36 1 1.7377 1.1971 6.7274 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359403204.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:33:39 Heat of formation + Delta-G solvation = 73.361518 kcal Electronic energy + Delta-G solvation = -21438.891567 eV Core-core repulsion = 18244.984755 eV Total energy + Delta-G solvation = -3193.906812 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.83996 -40.67301 -37.86853 -37.17301 -35.34593 -34.04307 -32.57726 -29.52826 -28.83231 -26.87847 -25.17668 -24.42788 -23.23302 -22.67388 -20.87329 -20.14958 -19.19413 -18.70228 -17.96538 -17.43908 -16.83333 -16.61582 -16.36104 -15.98858 -15.54845 -15.19888 -14.88534 -14.39138 -14.21587 -14.14021 -13.66274 -13.17358 -12.98826 -12.82436 -12.71049 -12.62134 -12.37620 -12.24222 -12.12360 -12.05046 -11.80097 -11.36704 -11.05185 -10.86024 -10.52899 -10.45753 -10.29388 -10.25139 -9.60069 -8.29539 -6.40582 -1.08852 0.12471 0.79822 0.99272 1.27835 1.40172 1.44907 1.48902 1.99367 2.24466 2.37783 2.90573 3.02830 3.12279 3.50847 3.61922 3.98867 4.05925 4.15928 4.22836 4.26008 4.54285 4.63178 4.73783 4.77846 4.82303 4.99421 5.00394 5.07062 5.21812 5.30891 5.52683 5.67522 5.70701 5.85051 5.86718 6.32922 6.65498 6.85398 7.07784 7.26766 8.74374 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.012249 B = 0.007803 C = 0.005313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2285.347141 B = 3587.278873 C = 5269.143746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.186 4.186 3 C 0.143 3.857 4 N -0.587 5.587 5 C 0.239 3.761 6 C -0.549 4.549 7 H 0.058 0.942 8 C 0.050 3.950 9 N -0.890 5.890 10 Si 0.930 3.070 11 H -0.278 1.278 12 H -0.275 1.275 13 H -0.267 1.267 14 C 0.602 3.398 15 O -0.560 6.560 16 C -0.333 4.333 17 S 0.576 5.424 18 N -0.362 5.362 19 N -0.285 5.285 20 C 0.109 3.891 21 C -0.106 4.106 22 C -0.147 4.147 23 C -0.145 4.145 24 H 0.102 0.898 25 H 0.116 0.884 26 H 0.109 0.891 27 H 0.085 0.915 28 H 0.092 0.908 29 H 0.027 0.973 30 H 0.053 0.947 31 H 0.275 0.725 32 H 0.133 0.867 33 H 0.095 0.905 34 H 0.126 0.874 35 H 0.125 0.875 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.028 0.436 2.511 9.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.205 4.205 3 C 0.022 3.978 4 N -0.316 5.316 5 C 0.115 3.885 6 C -0.591 4.591 7 H 0.076 0.924 8 C -0.155 4.155 9 N -0.527 5.527 10 Si 0.755 3.245 11 H -0.203 1.203 12 H -0.200 1.200 13 H -0.192 1.192 14 C 0.389 3.611 15 O -0.442 6.442 16 C -0.473 4.473 17 S 0.718 5.282 18 N -0.341 5.341 19 N -0.146 5.146 20 C -0.041 4.041 21 C -0.127 4.127 22 C -0.184 4.184 23 C -0.183 4.183 24 H 0.120 0.880 25 H 0.134 0.866 26 H 0.127 0.873 27 H 0.103 0.897 28 H 0.110 0.890 29 H 0.044 0.956 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.151 0.849 33 H 0.113 0.887 34 H 0.144 0.856 35 H 0.144 0.856 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.491 0.045 3.160 8.130 hybrid contribution -0.075 0.860 -0.687 1.103 sum -7.566 0.905 2.473 8.011 Atomic orbital electron populations 1.24012 0.95171 1.02947 0.97890 1.23247 0.96810 0.98219 1.02259 1.20589 0.91848 0.96609 0.88774 1.48018 1.16709 1.55433 1.11453 1.19511 0.77754 0.94188 0.96999 1.21558 0.93102 0.94680 1.49724 0.92423 1.25347 0.99235 0.96938 0.94025 1.69924 1.18422 1.17566 1.46781 0.86011 0.79063 0.80072 0.79314 1.20309 1.19953 1.19203 1.16527 0.84409 0.78622 0.81513 1.90645 1.23345 1.46509 1.83662 1.27723 1.02735 1.16981 0.99853 1.84778 1.01917 1.39417 1.02041 1.78099 1.21129 1.19165 1.15704 1.70640 0.95583 1.16033 1.32380 1.22209 0.96448 0.97638 0.87847 1.20606 0.91287 1.06606 0.94250 1.23104 1.03117 0.97794 0.94418 1.23065 1.00391 0.96224 0.98640 0.87974 0.86556 0.87325 0.89698 0.89010 0.95593 0.92892 0.91491 0.84932 0.88666 0.85604 0.85643 0.89472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.90 14.31 67.78 0.97 -2.93 16 2 C -0.19 -5.33 9.84 25.64 0.25 -5.08 16 3 C 0.14 4.74 5.89 85.63 0.50 5.24 16 4 N -0.59 -23.19 2.46 -834.68 -2.05 -25.24 16 5 C 0.24 10.25 4.77 85.63 0.41 10.66 16 6 C -0.55 -25.44 7.32 25.60 0.19 -25.25 16 7 H 0.06 2.78 7.81 -2.91 -0.02 2.75 16 8 C 0.05 2.32 5.26 84.65 0.44 2.77 16 9 N -0.89 -42.76 13.29 21.45 0.28 -42.47 16 10 Si 0.93 38.25 29.54 68.60 2.03 40.28 16 11 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 12 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 13 H -0.27 -10.79 7.11 99.48 0.71 -10.09 16 14 C 0.60 25.12 7.59 86.59 0.66 25.78 16 15 O -0.56 -23.78 14.44 -4.12 -0.06 -23.84 16 16 C -0.33 -13.91 6.47 24.62 0.16 -13.75 16 17 S 0.58 24.33 17.44 -56.49 -0.98 23.34 16 18 N -0.36 -15.45 12.51 37.02 0.46 -14.99 16 19 N -0.28 -11.67 10.95 -48.19 -0.53 -12.20 16 20 C 0.11 4.27 6.59 42.65 0.28 4.56 16 21 C -0.11 -3.41 5.70 -11.54 -0.07 -3.48 16 22 C -0.15 -3.70 10.11 30.62 0.31 -3.39 16 23 C -0.15 -3.69 10.24 30.62 0.31 -3.38 16 24 H 0.10 2.34 7.86 -2.91 -0.02 2.32 16 25 H 0.12 2.28 8.06 -2.91 -0.02 2.26 16 26 H 0.11 3.09 8.06 -2.91 -0.02 3.07 16 27 H 0.08 2.79 6.90 -2.39 -0.02 2.77 16 28 H 0.09 2.91 8.11 -2.39 -0.02 2.89 16 29 H 0.03 1.20 4.47 -19.85 -0.09 1.11 16 30 H 0.05 2.31 8.02 -2.39 -0.02 2.29 16 31 H 0.28 12.68 8.31 -92.71 -0.77 11.90 16 32 H 0.13 4.49 6.55 -2.39 -0.02 4.47 16 33 H 0.09 2.60 7.80 -2.39 -0.02 2.59 16 34 H 0.13 2.43 8.14 -2.39 -0.02 2.41 16 35 H 0.13 2.52 8.14 -2.39 -0.02 2.50 16 36 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 Total: -1.00 -53.64 322.40 4.59 -49.05 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: 1.02 Total: 14.32 kcal Atomic # 6 Polarization: -12.67 SS G_CDS: 4.42 Total: -8.25 kcal Atomic # 7 Polarization: -93.07 SS G_CDS: -1.83 Total: -94.90 kcal Atomic # 8 Polarization: -23.78 SS G_CDS: -0.06 Total: -23.84 kcal Atomic # 14 Polarization: 38.25 SS G_CDS: 2.03 Total: 40.28 kcal Atomic # 16 Polarization: 24.33 SS G_CDS: -0.98 Total: 23.34 kcal Total: -53.64 4.59 -49.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359403204.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.408 kcal (2) G-P(sol) polarization free energy of solvation -53.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds