Wall clock time and date at job start Tue Mar 31 2020 06:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50699 * 120.00190 * 2 1 4 4 N 1.46508 * 109.47009 * 124.99713 * 3 2 1 5 5 C 1.46501 * 119.99970 * 283.84585 * 4 3 2 6 6 C 1.50699 * 109.46664 * 270.00084 * 5 4 3 7 7 H 1.07996 * 120.00709 * 359.97438 * 6 5 4 8 8 C 1.37879 * 119.99545 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99949 * 179.97438 * 8 6 5 10 10 Si 1.86800 * 120.00310 * 0.02562 * 8 6 5 11 11 H 1.48503 * 109.47228 * 89.99562 * 10 8 6 12 12 H 1.48496 * 109.47483 * 210.00003 * 10 8 6 13 13 H 1.48504 * 109.46763 * 330.00179 * 10 8 6 14 14 C 1.34774 * 119.99744 * 103.84933 * 4 3 2 15 15 O 1.21560 * 119.99999 * 186.71830 * 14 4 3 16 16 C 1.47775 * 120.00320 * 6.70797 * 14 4 3 17 17 C 1.39628 * 120.15251 * 326.07827 * 16 14 4 18 18 C 1.37895 * 119.86392 * 179.97438 * 17 16 14 19 19 C 1.38432 * 120.18045 * 0.02562 * 18 17 16 20 20 C 1.50703 * 119.83977 * 179.97438 * 19 18 17 21 21 C 1.38273 * 120.31611 * 359.74629 * 19 18 17 22 22 C 1.38156 * 120.12761 * 0.50968 * 21 19 18 23 23 Cl 1.73600 * 120.08822 * 179.77330 * 22 21 19 24 24 H 1.07998 * 119.99839 * 0.02562 * 1 2 3 25 25 H 1.08001 * 119.99936 * 180.02562 * 1 2 3 26 26 H 1.08004 * 120.00118 * 179.97438 * 2 1 3 27 27 H 1.08996 * 109.46831 * 5.00233 * 3 2 1 28 28 H 1.08999 * 109.47058 * 244.99241 * 3 2 1 29 29 H 1.08999 * 109.47142 * 29.99823 * 5 4 3 30 30 H 1.08996 * 109.46583 * 150.00445 * 5 4 3 31 31 H 0.97000 * 120.00315 * 180.02562 * 9 8 6 32 32 H 1.07996 * 120.06638 * 0.02562 * 17 16 14 33 33 H 1.08000 * 119.91235 * 180.02562 * 18 17 16 34 34 H 1.09000 * 109.46879 * 90.00074 * 20 19 18 35 35 H 1.08997 * 109.47192 * 210.00317 * 20 19 18 36 36 H 1.08999 * 109.47249 * 330.00361 * 20 19 18 37 37 H 1.08002 * 119.93181 * 180.27490 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1315 5 6 2.4921 1.5729 2.4867 6 6 2.5009 3.0531 2.7696 7 1 2.8460 3.7450 2.0156 8 6 2.0692 3.5239 3.9915 9 7 2.0773 4.8155 4.2386 10 14 1.4742 2.3270 5.2965 11 1 2.6202 1.9070 6.1424 12 1 0.4494 2.9878 6.1439 13 1 0.8801 1.1346 4.6404 14 6 4.3110 1.1348 0.9257 15 8 5.0660 1.0351 1.8732 16 6 4.8376 1.0397 -0.4518 17 6 4.0645 0.4599 -1.4597 18 6 4.5615 0.3747 -2.7431 19 6 5.8243 0.8617 -3.0342 20 6 6.3601 0.7641 -4.4394 21 6 6.5943 1.4415 -2.0428 22 6 6.1113 1.5288 -0.7514 23 17 7.0813 2.2516 0.4937 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5400 -0.9353 0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3586 2.1316 0.0896 28 1 2.6214 1.4025 -0.9313 29 1 1.4738 1.1931 2.5701 30 1 3.1308 1.0615 3.2068 31 1 1.7740 5.1468 5.0984 32 1 3.0790 0.0798 -1.2347 33 1 3.9641 -0.0731 -3.5234 34 1 6.0845 1.6597 -4.9963 35 1 7.4460 0.6750 -4.4088 36 1 5.9372 -0.1129 -4.9294 37 1 7.5769 1.8234 -2.2778 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359442744.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:22 Heat of formation + Delta-G solvation = 32.376518 kcal Electronic energy + Delta-G solvation = -21150.038579 eV Core-core repulsion = 17920.018066 eV Total energy + Delta-G solvation = -3230.020512 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.27581 -38.26904 -36.35296 -35.81743 -33.35880 -32.82588 -32.05553 -30.88100 -28.68701 -27.16057 -25.75239 -23.12325 -22.67076 -21.46015 -20.17557 -18.99965 -17.01436 -16.87839 -16.46575 -15.88918 -15.21773 -14.89163 -14.47675 -14.40116 -14.09275 -13.81678 -13.55782 -13.09278 -12.96795 -12.62209 -12.44598 -12.30942 -11.90098 -11.74263 -11.58053 -11.26423 -11.23525 -10.98960 -10.72547 -10.62466 -10.50964 -10.14632 -9.59103 -9.34077 -9.07016 -8.73900 -8.60537 -8.56634 -7.74364 -6.06921 -4.05666 0.87421 1.13701 2.30744 2.36432 3.15095 3.30794 3.36732 3.39057 3.64249 3.97837 4.41408 4.58817 4.67363 4.81968 5.03673 5.09715 5.13469 5.26296 5.28564 5.31106 5.36113 5.47521 5.56107 5.68728 5.82981 5.93361 6.04747 6.13765 6.15469 6.31681 6.64237 6.68274 6.73553 6.81740 6.97010 7.32857 7.62197 8.18226 8.47973 8.88430 8.97789 9.53216 11.06397 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.017016 B = 0.005556 C = 0.004514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.122796 B = 5038.206962 C = 6201.940092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.177 4.177 3 C 0.104 3.896 4 N -0.579 5.579 5 C 0.218 3.782 6 C -0.529 4.529 7 H 0.075 0.925 8 C 0.074 3.926 9 N -0.897 5.897 10 Si 0.874 3.126 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.265 1.265 14 C 0.548 3.452 15 O -0.516 6.516 16 C -0.119 4.119 17 C -0.097 4.097 18 C -0.129 4.129 19 C -0.063 4.063 20 C -0.114 4.114 21 C -0.123 4.123 22 C 0.014 3.986 23 Cl -0.036 7.036 24 H 0.101 0.899 25 H 0.096 0.904 26 H 0.108 0.892 27 H 0.085 0.915 28 H 0.105 0.895 29 H 0.032 0.968 30 H 0.039 0.961 31 H 0.264 0.736 32 H 0.158 0.842 33 H 0.131 0.869 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.280 -10.219 -17.837 20.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.196 4.196 3 C -0.019 4.019 4 N -0.310 5.310 5 C 0.098 3.902 6 C -0.567 4.567 7 H 0.093 0.907 8 C -0.128 4.128 9 N -0.535 5.535 10 Si 0.701 3.299 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.190 1.190 14 C 0.334 3.666 15 O -0.392 6.392 16 C -0.123 4.123 17 C -0.116 4.116 18 C -0.147 4.147 19 C -0.063 4.063 20 C -0.171 4.171 21 C -0.142 4.142 22 C -0.014 4.014 23 Cl -0.007 7.007 24 H 0.120 0.880 25 H 0.115 0.885 26 H 0.126 0.874 27 H 0.103 0.897 28 H 0.122 0.878 29 H 0.050 0.950 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.175 0.825 33 H 0.149 0.851 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.725 -10.045 -17.017 20.109 hybrid contribution -0.360 -0.335 0.924 1.046 sum 3.365 -10.380 -16.094 19.444 Atomic orbital electron populations 1.23882 0.95760 1.02018 0.99322 1.23340 0.96461 0.98860 1.00977 1.21396 0.93706 0.95516 0.91248 1.47737 1.05080 1.68833 1.09312 1.19672 0.94400 0.97746 0.78396 1.21319 1.43721 0.90373 1.01311 0.90695 1.24826 0.95120 0.95021 0.97860 1.69895 1.47453 1.12534 1.23649 0.86881 0.79104 0.81583 0.82352 1.19870 1.21072 1.19008 1.17982 0.82756 0.78275 0.87558 1.90792 1.56446 1.49219 1.42748 1.20093 0.94051 1.02440 0.95691 1.22045 0.99900 0.97415 0.92199 1.21060 0.95504 1.01387 0.96749 1.19989 0.94106 0.96487 0.95752 1.20826 1.01432 1.02692 0.92157 1.20880 1.00994 1.01819 0.90531 1.20999 0.91946 0.97811 0.90620 1.98426 1.69336 1.80638 1.52300 0.88025 0.88533 0.87396 0.89670 0.87819 0.95009 0.94302 0.92578 0.82452 0.85072 0.90692 0.91256 0.91161 0.84674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.08 14.32 29.01 0.42 -1.66 16 2 C -0.18 -2.39 8.23 -36.03 -0.30 -2.68 16 3 C 0.10 1.69 5.37 -5.19 -0.03 1.66 16 4 N -0.58 -12.25 2.48 -177.58 -0.44 -12.69 16 5 C 0.22 5.42 4.23 -5.19 -0.02 5.40 16 6 C -0.53 -15.34 9.94 -34.44 -0.34 -15.69 16 7 H 0.07 2.39 8.06 -52.49 -0.42 1.97 16 8 C 0.07 2.18 5.47 -17.82 -0.10 2.08 16 9 N -0.90 -27.88 13.96 55.43 0.77 -27.11 16 10 Si 0.87 21.84 27.47 -169.99 -4.67 17.17 16 11 H -0.27 -6.89 7.11 56.52 0.40 -6.48 16 12 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 13 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 14 C 0.55 11.81 7.18 -12.36 -0.09 11.72 16 15 O -0.52 -12.97 14.53 5.31 0.08 -12.89 16 16 C -0.12 -2.04 5.52 -104.94 -0.58 -2.62 16 17 C -0.10 -1.28 7.42 -39.19 -0.29 -1.57 16 18 C -0.13 -1.36 9.68 -39.64 -0.38 -1.74 16 19 C -0.06 -0.66 5.89 -104.54 -0.62 -1.27 16 20 C -0.11 -0.79 10.00 36.01 0.36 -0.43 16 21 C -0.12 -1.55 9.47 -39.60 -0.37 -1.92 16 22 C 0.01 0.23 6.33 -39.07 -0.25 -0.02 16 23 Cl -0.04 -0.67 26.62 -51.86 -1.38 -2.05 16 24 H 0.10 1.22 7.84 -52.49 -0.41 0.81 16 25 H 0.10 0.98 8.06 -52.49 -0.42 0.56 16 26 H 0.11 1.35 7.71 -52.48 -0.40 0.94 16 27 H 0.09 1.45 7.79 -51.93 -0.40 1.04 16 28 H 0.10 1.46 3.80 -52.21 -0.20 1.26 16 29 H 0.03 0.76 6.99 -51.93 -0.36 0.40 16 30 H 0.04 1.04 6.77 -51.93 -0.35 0.68 16 31 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 32 H 0.16 1.87 3.65 -52.49 -0.19 1.68 16 33 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 36 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 37 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16 LS Contribution 324.26 15.07 4.89 4.89 Total: -1.00 -34.35 324.26 -7.79 -42.14 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -4.45 Total: -0.71 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: -2.59 Total: -8.75 kcal Atomic # 7 Polarization: -40.13 SS G_CDS: 0.33 Total: -39.80 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: 0.08 Total: -12.89 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.67 Total: 17.17 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -1.38 Total: -2.05 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -34.35 -7.79 -42.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359442744.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.515 kcal (2) G-P(sol) polarization free energy of solvation -34.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds