Wall clock time and date at job start Tue Mar 31 2020 06:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50699 * 120.00190 * 2 1 4 4 N 1.46508 * 109.47009 * 124.99713 * 3 2 1 5 5 C 1.46501 * 119.99970 * 283.84585 * 4 3 2 6 6 C 1.50699 * 109.46664 * 270.00084 * 5 4 3 7 7 H 1.07996 * 120.00709 * 359.97438 * 6 5 4 8 8 C 1.37879 * 119.99545 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99949 * 179.97438 * 8 6 5 10 10 Si 1.86800 * 120.00310 * 0.02562 * 8 6 5 11 11 H 1.48503 * 109.47228 * 89.99562 * 10 8 6 12 12 H 1.48496 * 109.47483 * 210.00003 * 10 8 6 13 13 H 1.48504 * 109.46763 * 330.00179 * 10 8 6 14 14 C 1.34774 * 119.99744 * 103.84933 * 4 3 2 15 15 O 1.21560 * 119.99999 * 186.71830 * 14 4 3 16 16 C 1.47775 * 120.00320 * 6.70797 * 14 4 3 17 17 C 1.39628 * 120.15251 * 326.07827 * 16 14 4 18 18 C 1.37895 * 119.86392 * 179.97438 * 17 16 14 19 19 C 1.38432 * 120.18045 * 0.02562 * 18 17 16 20 20 C 1.50703 * 119.83977 * 179.97438 * 19 18 17 21 21 C 1.38273 * 120.31611 * 359.74629 * 19 18 17 22 22 C 1.38156 * 120.12761 * 0.50968 * 21 19 18 23 23 Cl 1.73600 * 120.08822 * 179.77330 * 22 21 19 24 24 H 1.07998 * 119.99839 * 0.02562 * 1 2 3 25 25 H 1.08001 * 119.99936 * 180.02562 * 1 2 3 26 26 H 1.08004 * 120.00118 * 179.97438 * 2 1 3 27 27 H 1.08996 * 109.46831 * 5.00233 * 3 2 1 28 28 H 1.08999 * 109.47058 * 244.99241 * 3 2 1 29 29 H 1.08999 * 109.47142 * 29.99823 * 5 4 3 30 30 H 1.08996 * 109.46583 * 150.00445 * 5 4 3 31 31 H 0.97000 * 120.00315 * 180.02562 * 9 8 6 32 32 H 1.07996 * 120.06638 * 0.02562 * 17 16 14 33 33 H 1.08000 * 119.91235 * 180.02562 * 18 17 16 34 34 H 1.09000 * 109.46879 * 90.00074 * 20 19 18 35 35 H 1.08997 * 109.47192 * 210.00317 * 20 19 18 36 36 H 1.08999 * 109.47249 * 330.00361 * 20 19 18 37 37 H 1.08002 * 119.93181 * 180.27490 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1315 5 6 2.4921 1.5729 2.4867 6 6 2.5009 3.0531 2.7696 7 1 2.8460 3.7450 2.0156 8 6 2.0692 3.5239 3.9915 9 7 2.0773 4.8155 4.2386 10 14 1.4742 2.3270 5.2965 11 1 2.6202 1.9070 6.1424 12 1 0.4494 2.9878 6.1439 13 1 0.8801 1.1346 4.6404 14 6 4.3110 1.1348 0.9257 15 8 5.0660 1.0351 1.8732 16 6 4.8376 1.0397 -0.4518 17 6 4.0645 0.4599 -1.4597 18 6 4.5615 0.3747 -2.7431 19 6 5.8243 0.8617 -3.0342 20 6 6.3601 0.7641 -4.4394 21 6 6.5943 1.4415 -2.0428 22 6 6.1113 1.5288 -0.7514 23 17 7.0813 2.2516 0.4937 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5400 -0.9353 0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3586 2.1316 0.0896 28 1 2.6214 1.4025 -0.9313 29 1 1.4738 1.1931 2.5701 30 1 3.1308 1.0615 3.2068 31 1 1.7740 5.1468 5.0984 32 1 3.0790 0.0798 -1.2347 33 1 3.9641 -0.0731 -3.5234 34 1 6.0845 1.6597 -4.9963 35 1 7.4460 0.6750 -4.4088 36 1 5.9372 -0.1129 -4.9294 37 1 7.5769 1.8234 -2.2778 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359442744.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:22 Heat of formation + Delta-G solvation = 10.905425 kcal Electronic energy + Delta-G solvation = -21150.969635 eV Core-core repulsion = 17920.018066 eV Total energy + Delta-G solvation = -3230.951569 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.58736 -39.57012 -37.70944 -37.23200 -35.18966 -33.87757 -33.76604 -31.92706 -30.39791 -28.27586 -27.11514 -24.79973 -23.76697 -22.74237 -21.38439 -20.35899 -19.10714 -18.39182 -17.75929 -17.05965 -16.70351 -16.14976 -15.98661 -15.88631 -15.32768 -14.86870 -14.72527 -14.63512 -14.26142 -14.14689 -13.60608 -13.52886 -13.22758 -13.02896 -12.96490 -12.73038 -12.52037 -12.35042 -12.23086 -12.03007 -11.95999 -11.83876 -11.73858 -10.85350 -10.67005 -10.42495 -9.80904 -9.73440 -9.43657 -8.35950 -6.41200 -0.23294 0.13279 1.14531 1.26047 1.31112 1.34682 1.43074 1.78167 2.26634 2.29008 2.66397 2.98311 3.47734 3.70991 3.87594 4.02248 4.15592 4.20512 4.22674 4.32805 4.38534 4.64859 4.75210 4.82272 4.86232 4.89627 4.91701 5.06492 5.09886 5.15655 5.26281 5.42302 5.45093 5.47936 5.68477 5.77875 5.88930 6.21505 6.57352 6.59936 7.16724 7.31335 8.81145 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.017016 B = 0.005556 C = 0.004514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.122796 B = 5038.206962 C = 6201.940092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.192 4.192 3 C 0.101 3.899 4 N -0.587 5.587 5 C 0.230 3.770 6 C -0.536 4.536 7 H 0.026 0.974 8 C 0.015 3.985 9 N -0.944 5.944 10 Si 0.946 3.054 11 H -0.277 1.277 12 H -0.272 1.272 13 H -0.238 1.238 14 C 0.539 3.461 15 O -0.569 6.569 16 C -0.153 4.153 17 C -0.094 4.094 18 C -0.114 4.114 19 C -0.047 4.047 20 C -0.114 4.114 21 C -0.125 4.125 22 C -0.010 4.010 23 Cl -0.073 7.073 24 H 0.099 0.901 25 H 0.125 0.875 26 H 0.122 0.878 27 H 0.069 0.931 28 H 0.126 0.874 29 H 0.050 0.950 30 H 0.019 0.981 31 H 0.269 0.731 32 H 0.172 0.828 33 H 0.177 0.823 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.093 0.907 37 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.873 -12.951 -20.831 24.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.211 4.211 3 C -0.020 4.020 4 N -0.317 5.317 5 C 0.108 3.892 6 C -0.575 4.575 7 H 0.045 0.955 8 C -0.184 4.184 9 N -0.584 5.584 10 Si 0.768 3.232 11 H -0.203 1.203 12 H -0.197 1.197 13 H -0.161 1.161 14 C 0.328 3.672 15 O -0.449 6.449 16 C -0.157 4.157 17 C -0.112 4.112 18 C -0.132 4.132 19 C -0.047 4.047 20 C -0.170 4.170 21 C -0.143 4.143 22 C -0.037 4.037 23 Cl -0.044 7.044 24 H 0.117 0.883 25 H 0.143 0.857 26 H 0.140 0.860 27 H 0.087 0.913 28 H 0.143 0.857 29 H 0.068 0.932 30 H 0.037 0.963 31 H 0.078 0.922 32 H 0.189 0.811 33 H 0.194 0.806 34 H 0.108 0.892 35 H 0.097 0.903 36 H 0.112 0.888 37 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 2.290 -12.788 -20.074 23.911 hybrid contribution 0.094 0.569 1.642 1.741 sum 2.385 -12.218 -18.432 22.242 Atomic orbital electron populations 1.24130 0.95262 1.03243 0.96472 1.23173 0.96833 0.97630 1.03466 1.21664 0.93042 0.96921 0.90405 1.47802 1.06105 1.68557 1.09197 1.19275 0.94848 0.94450 0.80596 1.21513 1.43347 0.92078 1.00542 0.95539 1.25806 0.95181 0.96981 1.00389 1.70046 1.48799 1.14876 1.24656 0.85749 0.78662 0.79838 0.78940 1.20289 1.19672 1.16113 1.18741 0.82369 0.76930 0.89175 1.90736 1.57594 1.51644 1.44879 1.19878 0.95376 1.06236 0.94183 1.22199 0.99999 0.96604 0.92384 1.21569 0.95654 0.99670 0.96305 1.20523 0.93586 0.93643 0.96993 1.20954 1.02160 1.04406 0.89472 1.21183 1.02151 1.01708 0.89267 1.21273 0.91792 0.99368 0.91283 1.98403 1.70205 1.81451 1.54309 0.88314 0.85740 0.86013 0.91291 0.85718 0.93198 0.96269 0.92213 0.81145 0.80569 0.89224 0.90300 0.88838 0.82827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.22 14.32 67.78 0.97 -2.25 16 2 C -0.19 -4.73 8.23 25.65 0.21 -4.52 16 3 C 0.10 3.23 5.37 85.63 0.46 3.69 16 4 N -0.59 -25.58 2.48 -834.00 -2.06 -27.64 16 5 C 0.23 11.75 4.23 85.63 0.36 12.11 16 6 C -0.54 -32.68 9.94 25.60 0.25 -32.43 16 7 H 0.03 1.81 8.06 -2.91 -0.02 1.79 16 8 C 0.01 0.88 5.47 84.66 0.46 1.35 16 9 N -0.94 -60.95 13.96 21.45 0.30 -60.65 16 10 Si 0.95 45.64 27.47 68.60 1.88 47.52 16 11 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 12 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 13 H -0.24 -10.35 6.54 99.48 0.65 -9.69 16 14 C 0.54 24.31 7.18 86.77 0.62 24.93 16 15 O -0.57 -30.48 14.53 -3.90 -0.06 -30.54 16 16 C -0.15 -5.33 5.52 -20.07 -0.11 -5.44 16 17 C -0.09 -2.27 7.42 22.52 0.17 -2.10 16 18 C -0.11 -1.90 9.68 22.23 0.22 -1.68 16 19 C -0.05 -0.79 5.89 -19.81 -0.12 -0.91 16 20 C -0.11 -0.97 10.00 71.24 0.71 -0.26 16 21 C -0.12 -2.92 9.47 22.26 0.21 -2.71 16 22 C -0.01 -0.32 6.33 22.60 0.14 -0.17 16 23 Cl -0.07 -2.84 26.62 -2.72 -0.07 -2.91 16 24 H 0.10 2.14 7.84 -2.91 -0.02 2.12 16 25 H 0.12 1.96 8.06 -2.91 -0.02 1.94 16 26 H 0.12 2.69 7.71 -2.91 -0.02 2.67 16 27 H 0.07 2.39 7.79 -2.39 -0.02 2.37 16 28 H 0.13 3.39 3.80 -2.65 -0.01 3.38 16 29 H 0.05 2.35 6.99 -2.39 -0.02 2.33 16 30 H 0.02 1.06 6.77 -2.39 -0.02 1.04 16 31 H 0.27 16.09 8.31 -92.71 -0.77 15.32 16 32 H 0.17 3.60 3.65 -2.91 -0.01 3.59 16 33 H 0.18 1.42 8.06 -2.91 -0.02 1.39 16 34 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.08 0.59 8.08 -2.39 -0.02 0.57 16 36 H 0.09 0.45 8.08 -2.39 -0.02 0.43 16 37 H 0.15 2.93 8.06 -2.91 -0.02 2.90 16 Total: -1.00 -82.00 324.26 5.58 -76.42 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: 1.02 Total: 8.19 kcal Atomic # 6 Polarization: -14.95 SS G_CDS: 4.57 Total: -10.38 kcal Atomic # 7 Polarization: -86.53 SS G_CDS: -1.76 Total: -88.29 kcal Atomic # 8 Polarization: -30.48 SS G_CDS: -0.06 Total: -30.54 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 1.88 Total: 47.52 kcal Atomic # 17 Polarization: -2.84 SS G_CDS: -0.07 Total: -2.91 kcal Total: -82.00 5.58 -76.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359442744.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.324 kcal (2) G-P(sol) polarization free energy of solvation -81.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds