Wall clock time and date at job start Tue Mar 31 2020 06:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86808 * 119.99922 * 2 1 4 4 H 1.48497 * 109.46875 * 270.00147 * 3 2 1 5 5 H 1.48497 * 109.46872 * 30.00211 * 3 2 1 6 6 H 1.48494 * 109.47249 * 149.99988 * 3 2 1 7 7 C 1.37880 * 120.00485 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99631 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00080 * 180.02562 * 7 2 1 10 10 C 1.53003 * 109.46808 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47182 * 179.97438 * 10 9 7 12 12 N 1.46493 * 109.47084 * 179.97438 * 11 10 9 13 13 C 1.34784 * 119.99864 * 180.02562 * 12 11 10 14 14 O 1.21283 * 119.99649 * 359.72839 * 13 12 11 15 15 C 1.50694 * 119.99988 * 179.72721 * 13 12 11 16 16 C 1.50698 * 109.47166 * 179.97438 * 15 13 12 17 17 C 1.30913 * 121.84018 * 85.02452 * 16 15 13 18 18 S 1.75777 * 109.82247 * 180.02562 * 17 16 15 19 19 C 1.76247 * 90.70044 * 359.97438 * 18 17 16 20 20 N 1.32356 * 141.95541 * 179.97438 * 19 18 17 21 21 C 1.33874 * 109.13933 * 179.97438 * 20 19 18 22 22 C 1.34339 * 108.38607 * 0.02562 * 21 20 19 23 23 N 1.35150 * 109.22161 * 359.74037 * 19 18 17 24 24 H 0.96993 * 120.00178 * 359.97438 * 1 2 3 25 25 H 1.08993 * 109.47275 * 60.00022 * 9 7 2 26 26 H 1.09001 * 109.47061 * 299.99581 * 9 7 2 27 27 H 1.09007 * 109.47291 * 60.00087 * 10 9 7 28 28 H 1.08993 * 109.47243 * 299.99996 * 10 9 7 29 29 H 1.09007 * 109.46593 * 60.00081 * 11 10 9 30 30 H 1.09006 * 109.47216 * 300.00539 * 11 10 9 31 31 H 0.97000 * 120.00740 * 359.72857 * 12 11 10 32 32 H 1.08998 * 109.47224 * 299.99701 * 15 13 12 33 33 H 1.09002 * 109.47054 * 60.00213 * 15 13 12 34 34 H 1.08006 * 125.09006 * 0.03449 * 17 16 15 35 35 H 1.07996 * 125.80516 * 180.02562 * 21 20 19 36 36 H 1.08001 * 126.43480 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 0.0000 10 6 4.0216 -2.6364 -0.0001 11 6 5.5517 -2.6364 -0.0001 12 7 6.0400 -4.0176 0.0004 13 6 7.3651 -4.2638 0.0009 14 8 8.1532 -3.3419 -0.0039 15 6 7.8675 -5.6846 0.0077 16 6 9.3744 -5.6846 0.0063 17 6 10.0661 -5.5825 1.1131 18 16 11.7850 -5.6153 0.7470 19 6 11.4376 -5.7744 -0.9735 20 7 12.0318 -5.8825 -2.1512 21 6 11.0987 -5.9722 -3.1070 22 6 9.8892 -5.9195 -2.5248 23 7 10.0987 -5.7979 -1.1568 24 1 -0.4850 0.8400 0.0004 25 1 3.8746 -0.6807 0.8905 26 1 3.8752 -0.6795 -0.8895 27 1 3.6587 -3.1501 -0.8904 28 1 3.6580 -3.1505 0.8896 29 1 5.9149 -2.1226 0.8900 30 1 5.9150 -2.1224 -0.8901 31 1 5.4097 -4.7549 0.0046 32 1 7.5046 -6.1940 0.9003 33 1 7.5037 -6.2028 -0.8797 34 1 9.6437 -5.4918 2.1030 35 1 11.2864 -6.0702 -4.1660 36 1 8.9336 -5.9674 -3.0256 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360501324.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:00 Heat of formation + Delta-G solvation = 50.671706 kcal Electronic energy + Delta-G solvation = -19864.434609 eV Core-core repulsion = 16669.543893 eV Total energy + Delta-G solvation = -3194.890716 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.91243 -39.89667 -37.17242 -35.62955 -33.46300 -31.98865 -31.31890 -30.56466 -28.69206 -27.01249 -23.89392 -22.89479 -22.05617 -21.08172 -20.56440 -19.88456 -18.51941 -17.43027 -16.85395 -16.14100 -16.01025 -15.86047 -15.48331 -15.16320 -14.77173 -14.34323 -14.25031 -13.74715 -13.70996 -13.09796 -12.79960 -12.75680 -12.06982 -12.03239 -11.96638 -11.54353 -11.18903 -10.96632 -10.73397 -10.46203 -10.36602 -10.09010 -9.88362 -9.72537 -9.30441 -9.15436 -9.07145 -8.61759 -7.93343 -6.12479 -4.11772 0.60132 0.65469 1.30481 1.86100 2.25383 2.43847 2.66062 3.13090 3.26528 3.34533 3.37975 3.90680 4.24278 4.38688 4.46564 4.60988 4.79999 4.84429 4.92446 5.13597 5.21481 5.29418 5.42099 5.52350 5.77141 5.88513 6.16896 6.23922 6.32427 6.52610 6.54049 6.67804 7.13748 7.27202 7.38220 7.44596 7.69121 8.06174 8.43227 8.90808 9.49589 11.00674 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.031649 B = 0.002567 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.505469 B =10906.507594 C =11021.131149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.067 3.933 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.524 4.524 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.113 4.113 11 C 0.114 3.886 12 N -0.722 5.722 13 C 0.508 3.492 14 O -0.532 6.532 15 C -0.087 4.087 16 C 0.102 3.898 17 C -0.209 4.209 18 S 0.191 5.809 19 C 0.137 3.863 20 N -0.461 5.461 21 C 0.017 3.983 22 C -0.051 4.051 23 N -0.396 5.396 24 H 0.264 0.736 25 H 0.019 0.981 26 H 0.014 0.986 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.401 0.599 32 H 0.126 0.874 33 H 0.109 0.891 34 H 0.195 0.805 35 H 0.186 0.814 36 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.916 -16.404 0.476 25.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.134 4.134 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.562 4.562 8 H 0.090 0.910 9 C -0.049 4.049 10 C -0.151 4.151 11 C -0.009 4.009 12 N -0.373 5.373 13 C 0.292 3.708 14 O -0.408 6.408 15 C -0.129 4.129 16 C -0.009 4.009 17 C -0.346 4.346 18 S 0.442 5.558 19 C -0.229 4.229 20 N -0.185 5.185 21 C -0.133 4.133 22 C -0.184 4.184 23 N -0.075 5.075 24 H 0.074 0.926 25 H 0.037 0.963 26 H 0.032 0.968 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.236 0.764 32 H 0.144 0.856 33 H 0.127 0.873 34 H 0.212 0.788 35 H 0.203 0.797 36 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 22.289 -15.540 1.133 27.195 hybrid contribution -2.246 0.577 -0.819 2.459 sum 20.043 -14.963 0.314 25.014 Atomic orbital electron populations 1.69902 1.06324 1.27043 1.50800 1.25027 0.94747 0.99249 0.94392 0.86781 0.80386 0.83532 0.78635 1.20211 1.21302 1.18926 1.21076 0.89241 0.94524 1.51353 0.90999 1.19501 0.97343 0.91362 0.96686 1.21712 0.90394 1.01196 1.01793 1.21702 0.96301 0.80769 1.02090 1.46125 1.06257 1.10360 1.74557 1.20226 0.82965 0.90356 0.77268 1.90771 1.55237 1.45894 1.48900 1.20524 0.88567 0.96941 1.06916 1.18217 0.94066 1.04976 0.83632 1.24785 0.96887 1.10728 1.02222 1.84683 1.02089 1.80829 0.88182 1.26266 0.83141 1.11744 1.01740 1.70598 1.31659 1.21166 0.95042 1.22408 0.87493 1.04049 0.99331 1.22809 1.01976 1.14454 0.79152 1.43719 1.07142 1.50365 1.06314 0.92624 0.96304 0.96755 0.92074 0.91997 0.91616 0.91700 0.76449 0.85627 0.87253 0.78758 0.79664 0.80153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.26 13.96 55.43 0.77 -26.49 16 2 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 21.36 27.47 -169.99 -4.67 16.69 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.26 -6.19 6.54 56.52 0.37 -5.82 16 7 C -0.52 -14.38 9.66 -34.44 -0.33 -14.71 16 8 H 0.07 2.10 7.99 -52.49 -0.42 1.68 16 9 C -0.01 -0.25 4.04 -27.88 -0.11 -0.36 16 10 C -0.11 -1.96 5.27 -26.73 -0.14 -2.10 16 11 C 0.11 1.72 5.67 -4.04 -0.02 1.70 16 12 N -0.72 -8.21 5.56 -60.29 -0.33 -8.55 16 13 C 0.51 6.01 7.82 -10.98 -0.09 5.92 16 14 O -0.53 -8.82 16.03 5.56 0.09 -8.73 16 15 C -0.09 -0.65 6.00 -29.04 -0.17 -0.82 16 16 C 0.10 1.01 5.24 -81.75 -0.43 0.59 16 17 C -0.21 -1.82 10.81 29.04 0.31 -1.51 16 18 S 0.19 1.86 23.37 -107.50 -2.51 -0.66 16 19 C 0.14 1.77 8.93 -88.71 -0.79 0.97 16 20 N -0.46 -6.33 11.32 -13.56 -0.15 -6.48 16 21 C 0.02 0.18 11.82 -18.04 -0.21 -0.03 16 22 C -0.05 -0.53 11.97 -15.71 -0.19 -0.72 16 23 N -0.40 -4.63 3.19 -59.54 -0.19 -4.82 16 24 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 25 H 0.02 0.43 7.20 -51.93 -0.37 0.05 16 26 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 27 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 29 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.40 3.33 8.47 -40.82 -0.35 2.99 16 32 H 0.13 0.52 8.13 -51.93 -0.42 0.10 16 33 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.20 1.10 8.06 -52.48 -0.42 0.68 16 35 H 0.19 1.35 8.06 -52.49 -0.42 0.92 16 36 H 0.18 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 326.92 15.07 4.93 4.93 Total: -1.00 -36.05 326.92 -8.85 -44.89 By element: Atomic # 1 Polarization: 2.96 SS G_CDS: -4.50 Total: -1.54 kcal Atomic # 6 Polarization: -6.97 SS G_CDS: -2.27 Total: -9.24 kcal Atomic # 7 Polarization: -46.43 SS G_CDS: 0.10 Total: -46.33 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: 0.09 Total: -8.73 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.67 Total: 16.69 kcal Atomic # 16 Polarization: 1.86 SS G_CDS: -2.51 Total: -0.66 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -36.05 -8.85 -44.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360501324.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.566 kcal (2) G-P(sol) polarization free energy of solvation -36.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds