Wall clock time and date at job start Tue Mar 31 2020 06:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86808 * 119.99922 * 2 1 4 4 H 1.48497 * 109.46875 * 270.00147 * 3 2 1 5 5 H 1.48497 * 109.46872 * 30.00211 * 3 2 1 6 6 H 1.48494 * 109.47249 * 149.99988 * 3 2 1 7 7 C 1.37880 * 120.00485 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99631 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00080 * 180.02562 * 7 2 1 10 10 C 1.53003 * 109.46808 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47182 * 179.97438 * 10 9 7 12 12 N 1.46493 * 109.47084 * 179.97438 * 11 10 9 13 13 C 1.34784 * 119.99864 * 180.02562 * 12 11 10 14 14 O 1.21283 * 119.99649 * 359.72839 * 13 12 11 15 15 C 1.50694 * 119.99988 * 179.72721 * 13 12 11 16 16 C 1.50698 * 109.47166 * 179.97438 * 15 13 12 17 17 C 1.30913 * 121.84018 * 85.02452 * 16 15 13 18 18 S 1.75777 * 109.82247 * 180.02562 * 17 16 15 19 19 C 1.76247 * 90.70044 * 359.97438 * 18 17 16 20 20 N 1.32356 * 141.95541 * 179.97438 * 19 18 17 21 21 C 1.33874 * 109.13933 * 179.97438 * 20 19 18 22 22 C 1.34339 * 108.38607 * 0.02562 * 21 20 19 23 23 N 1.35150 * 109.22161 * 359.74037 * 19 18 17 24 24 H 0.96993 * 120.00178 * 359.97438 * 1 2 3 25 25 H 1.08993 * 109.47275 * 60.00022 * 9 7 2 26 26 H 1.09001 * 109.47061 * 299.99581 * 9 7 2 27 27 H 1.09007 * 109.47291 * 60.00087 * 10 9 7 28 28 H 1.08993 * 109.47243 * 299.99996 * 10 9 7 29 29 H 1.09007 * 109.46593 * 60.00081 * 11 10 9 30 30 H 1.09006 * 109.47216 * 300.00539 * 11 10 9 31 31 H 0.97000 * 120.00740 * 359.72857 * 12 11 10 32 32 H 1.08998 * 109.47224 * 299.99701 * 15 13 12 33 33 H 1.09002 * 109.47054 * 60.00213 * 15 13 12 34 34 H 1.08006 * 125.09006 * 0.03449 * 17 16 15 35 35 H 1.07996 * 125.80516 * 180.02562 * 21 20 19 36 36 H 1.08001 * 126.43480 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 0.0000 10 6 4.0216 -2.6364 -0.0001 11 6 5.5517 -2.6364 -0.0001 12 7 6.0400 -4.0176 0.0004 13 6 7.3651 -4.2638 0.0009 14 8 8.1532 -3.3419 -0.0039 15 6 7.8675 -5.6846 0.0077 16 6 9.3744 -5.6846 0.0063 17 6 10.0661 -5.5825 1.1131 18 16 11.7850 -5.6153 0.7470 19 6 11.4376 -5.7744 -0.9735 20 7 12.0318 -5.8825 -2.1512 21 6 11.0987 -5.9722 -3.1070 22 6 9.8892 -5.9195 -2.5248 23 7 10.0987 -5.7979 -1.1568 24 1 -0.4850 0.8400 0.0004 25 1 3.8746 -0.6807 0.8905 26 1 3.8752 -0.6795 -0.8895 27 1 3.6587 -3.1501 -0.8904 28 1 3.6580 -3.1505 0.8896 29 1 5.9149 -2.1226 0.8900 30 1 5.9150 -2.1224 -0.8901 31 1 5.4097 -4.7549 0.0046 32 1 7.5046 -6.1940 0.9003 33 1 7.5037 -6.2028 -0.8797 34 1 9.6437 -5.4918 2.1030 35 1 11.2864 -6.0702 -4.1660 36 1 8.9336 -5.9674 -3.0256 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360501324.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:59 Heat of formation + Delta-G solvation = 25.990537 kcal Electronic energy + Delta-G solvation = -19865.504864 eV Core-core repulsion = 16669.543893 eV Total energy + Delta-G solvation = -3195.960972 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.67247 -40.84391 -37.96282 -36.91379 -35.16509 -33.45507 -32.33187 -31.38526 -29.64173 -28.42332 -25.01846 -24.14576 -22.85142 -22.26336 -21.74975 -20.83129 -19.28210 -18.95883 -18.19948 -17.11810 -16.87790 -16.85580 -16.40482 -16.16312 -15.89105 -15.66771 -15.34534 -14.79965 -14.73651 -14.44457 -13.88862 -13.79731 -13.73628 -13.20713 -12.78658 -12.73705 -12.69760 -12.24355 -11.93645 -11.79372 -11.60140 -11.50913 -11.33677 -11.30394 -11.00080 -10.77123 -10.12276 -9.90756 -8.68662 -8.30273 -6.33949 -0.13710 -0.07317 0.61813 1.09132 1.35797 1.37766 1.48757 1.53872 1.59333 1.86091 2.24525 2.35119 3.05781 3.24905 3.52635 3.79839 3.95705 4.11653 4.17857 4.21896 4.30695 4.39243 4.49828 4.53357 4.62596 4.88217 4.90980 5.03790 5.06206 5.37078 5.49587 5.49906 5.55587 5.64672 5.81451 6.26629 6.52828 6.65742 6.74741 7.20765 7.31195 8.86046 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.031649 B = 0.002567 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.505469 B =10906.507594 C =11021.131149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.005 3.995 3 Si 0.945 3.055 4 H -0.269 1.269 5 H -0.285 1.285 6 H -0.248 1.248 7 C -0.530 4.530 8 H 0.040 0.960 9 C -0.014 4.014 10 C -0.100 4.100 11 C 0.127 3.873 12 N -0.711 5.711 13 C 0.509 3.491 14 O -0.583 6.583 15 C -0.073 4.073 16 C 0.077 3.923 17 C -0.200 4.200 18 S 0.196 5.804 19 C 0.102 3.898 20 N -0.500 5.500 21 C 0.000 4.000 22 C -0.054 4.054 23 N -0.401 5.401 24 H 0.266 0.734 25 H 0.020 0.980 26 H 0.017 0.983 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.419 0.581 32 H 0.168 0.832 33 H 0.134 0.866 34 H 0.226 0.774 35 H 0.211 0.789 36 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.559 -17.130 0.899 26.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.192 4.192 3 Si 0.769 3.231 4 H -0.194 1.194 5 H -0.211 1.211 6 H -0.172 1.172 7 C -0.568 4.568 8 H 0.058 0.942 9 C -0.052 4.052 10 C -0.138 4.138 11 C 0.003 3.997 12 N -0.363 5.363 13 C 0.296 3.704 14 O -0.463 6.463 15 C -0.115 4.115 16 C -0.033 4.033 17 C -0.337 4.337 18 S 0.447 5.553 19 C -0.264 4.264 20 N -0.225 5.225 21 C -0.149 4.149 22 C -0.186 4.186 23 N -0.080 5.080 24 H 0.075 0.925 25 H 0.038 0.962 26 H 0.035 0.965 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.256 0.744 32 H 0.186 0.814 33 H 0.152 0.848 34 H 0.243 0.757 35 H 0.228 0.772 36 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 22.924 -16.315 1.562 28.181 hybrid contribution -2.477 0.735 -0.946 2.751 sum 20.448 -15.581 0.616 25.715 Atomic orbital electron populations 1.70047 1.08190 1.28113 1.52728 1.25964 0.95550 1.03348 0.94309 0.85733 0.79546 0.78734 0.79104 1.19410 1.21108 1.17152 1.21474 0.91918 0.93256 1.50110 0.94201 1.19476 0.94060 0.94967 0.96661 1.21475 0.91989 0.97900 1.02391 1.21268 0.94343 0.82874 1.01176 1.45903 1.06874 1.09349 1.74211 1.20920 0.82205 0.91722 0.75559 1.90761 1.56403 1.47948 1.51175 1.20591 0.86772 0.93974 1.10173 1.18671 0.95347 1.05990 0.83285 1.25283 0.95980 1.09002 1.03448 1.84590 1.03455 1.80472 0.86778 1.26719 0.84154 1.12860 1.02632 1.70528 1.33283 1.22510 0.96139 1.22962 0.87514 1.04094 1.00300 1.23377 1.03033 1.13309 0.78922 1.43981 1.06924 1.49959 1.07158 0.92522 0.96186 0.96498 0.91605 0.91328 0.92454 0.92914 0.74350 0.81448 0.84775 0.75735 0.77218 0.77190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.35 13.96 21.45 0.30 -58.05 16 2 C 0.01 0.30 5.47 84.66 0.46 0.76 16 3 Si 0.94 43.58 27.47 68.60 1.88 45.46 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 5 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 6 H -0.25 -10.66 6.54 99.48 0.65 -10.01 16 7 C -0.53 -29.13 9.66 25.60 0.25 -28.89 16 8 H 0.04 2.38 7.99 -2.91 -0.02 2.35 16 9 C -0.01 -0.60 4.04 29.85 0.12 -0.47 16 10 C -0.10 -3.26 5.27 30.60 0.16 -3.10 16 11 C 0.13 3.57 5.67 86.38 0.49 4.06 16 12 N -0.71 -13.91 5.56 -463.05 -2.57 -16.49 16 13 C 0.51 10.49 7.82 87.65 0.69 11.18 16 14 O -0.58 -18.32 16.03 -3.04 -0.05 -18.37 16 15 C -0.07 -0.79 6.00 29.10 0.17 -0.62 16 16 C 0.08 1.33 5.24 41.72 0.22 1.55 16 17 C -0.20 -3.00 10.81 67.87 0.73 -2.26 16 18 S 0.20 3.66 23.37 -56.49 -1.32 2.34 16 19 C 0.10 2.59 8.93 179.68 1.60 4.19 16 20 N -0.50 -13.82 11.32 -196.80 -2.23 -16.05 16 21 C 0.00 0.01 11.82 83.49 0.99 0.99 16 22 C -0.05 -1.02 11.97 82.68 0.99 -0.03 16 23 N -0.40 -8.74 3.19 -342.28 -1.09 -9.83 16 24 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 25 H 0.02 0.87 7.20 -2.39 -0.02 0.85 16 26 H 0.02 0.73 7.57 -2.39 -0.02 0.71 16 27 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 28 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 29 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 30 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 31 H 0.42 5.30 8.47 -92.71 -0.79 4.51 16 32 H 0.17 0.43 8.13 -2.39 -0.02 0.41 16 33 H 0.13 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.23 1.72 8.06 -2.91 -0.02 1.70 16 35 H 0.21 2.86 8.06 -2.91 -0.02 2.84 16 36 H 0.21 2.38 8.06 -2.91 -0.02 2.35 16 Total: -1.00 -80.70 326.92 2.06 -78.64 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: 0.26 Total: 5.00 kcal Atomic # 6 Polarization: -19.52 SS G_CDS: 6.88 Total: -12.64 kcal Atomic # 7 Polarization: -94.83 SS G_CDS: -5.59 Total: -100.42 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: -0.05 Total: -18.37 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 1.88 Total: 45.46 kcal Atomic # 16 Polarization: 3.66 SS G_CDS: -1.32 Total: 2.34 kcal Total: -80.70 2.06 -78.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360501324.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.627 kcal (2) G-P(sol) polarization free energy of solvation -80.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds