Wall clock time and date at job start Tue Mar 31 2020 06:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38352 * 119.86247 * 2 1 4 4 C 1.37944 * 120.16330 * 179.97438 * 3 2 1 5 5 C 1.39596 * 119.87387 * 359.97438 * 4 3 2 6 6 C 1.47853 * 120.13576 * 180.02562 * 5 4 3 7 7 O 1.21552 * 120.00015 * 5.14259 * 6 5 4 8 8 N 1.34776 * 119.99973 * 185.15071 * 6 5 4 9 9 C 1.46504 * 119.99902 * 185.07348 * 8 6 5 10 10 C 1.52999 * 109.47021 * 184.99411 * 9 8 6 11 11 C 1.50696 * 115.55333 * 54.23952 * 10 9 8 12 12 H 1.08000 * 120.00181 * 215.59644 * 11 10 9 13 13 C 1.37880 * 119.99935 * 35.31325 * 11 10 9 14 14 N 1.31513 * 119.99705 * 355.78806 * 13 11 10 15 15 Si 1.86793 * 120.00156 * 175.78286 * 13 11 10 16 16 H 1.48506 * 109.46972 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.47451 * 120.00132 * 15 13 11 18 18 H 1.48495 * 109.47581 * 240.00297 * 15 13 11 19 19 C 1.52998 * 117.49578 * 199.91123 * 10 9 8 20 20 C 1.53001 * 117.49827 * 268.57006 * 10 9 8 21 21 C 1.39539 * 119.73003 * 0.27262 * 5 4 3 22 22 C 1.38112 * 119.83155 * 359.47302 * 21 5 4 23 23 Cl 1.73600 * 119.93806 * 180.25404 * 22 21 5 24 24 H 1.09003 * 109.47061 * 89.99720 * 1 2 3 25 25 H 1.08997 * 109.47495 * 210.00349 * 1 2 3 26 26 H 1.08999 * 109.46702 * 330.00121 * 1 2 3 27 27 H 1.08007 * 119.92025 * 359.97438 * 3 2 1 28 28 H 1.07995 * 120.06400 * 179.97438 * 4 3 2 29 29 H 0.97001 * 119.99956 * 5.07056 * 8 6 5 30 30 H 1.09004 * 109.46843 * 64.99539 * 9 8 6 31 31 H 1.08995 * 109.46892 * 304.99030 * 9 8 6 32 32 H 0.97008 * 119.99686 * 184.99314 * 14 13 11 33 33 H 1.09005 * 117.49438 * 214.99986 * 19 10 9 34 34 H 1.08997 * 117.50186 * 0.02562 * 19 10 9 35 35 H 1.08999 * 117.49998 * 359.97306 * 20 10 9 36 36 H 1.08999 * 117.50496 * 144.97300 * 20 10 9 37 37 H 1.07990 * 120.08495 * 179.72663 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1960 1.1998 0.0000 4 6 3.5754 1.2071 0.0005 5 6 4.2770 0.0003 0.0016 6 6 5.7556 0.0013 0.0028 7 8 6.3626 1.0502 0.0971 8 7 6.4303 -1.1608 -0.1010 9 6 7.8910 -1.1723 0.0117 10 6 8.4127 -2.5838 -0.2647 11 6 7.9746 -3.1945 -1.5708 12 1 7.7725 -4.2538 -1.6308 13 6 7.8262 -2.4001 -2.6879 14 7 7.9862 -1.0981 -2.5948 15 14 7.3981 -3.1731 -4.3336 16 1 7.2728 -4.6440 -4.1719 17 1 6.1102 -2.6177 -4.8214 18 1 8.4705 -2.8723 -5.3158 19 6 9.8136 -2.9310 0.2429 20 6 8.5812 -3.5216 0.9324 21 6 3.5774 -1.2070 -0.0036 22 6 2.1963 -1.2007 0.0012 23 17 1.3230 -2.7011 0.0014 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3634 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 1.6524 2.1331 -0.0004 28 1 4.1115 2.1445 0.0001 29 1 5.9488 -1.9895 -0.2502 30 1 8.1802 -0.8686 1.0178 31 1 8.3168 -0.4791 -0.7137 32 1 7.8113 -0.5317 -3.3627 33 1 10.4184 -3.6013 -0.3680 34 1 10.3634 -2.1541 0.7740 35 1 8.3208 -3.1330 1.9168 36 1 8.3748 -4.5803 0.7753 37 1 4.1144 -2.1439 -0.0073 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404093416.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:45 Heat of formation + Delta-G solvation = 0.146097 kcal Electronic energy + Delta-G solvation = -20951.095525 eV Core-core repulsion = 17719.677396 eV Total energy + Delta-G solvation = -3231.418128 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.84987 -38.22702 -36.70634 -36.31875 -33.34174 -32.66461 -32.17270 -30.69112 -27.78289 -25.87569 -25.15103 -22.75628 -22.10882 -21.26210 -19.69115 -19.30702 -17.68106 -16.26047 -15.90521 -15.31066 -14.89039 -14.83452 -14.49776 -14.37979 -13.94871 -13.89827 -13.59050 -12.98749 -12.50123 -12.46077 -12.41428 -11.88563 -11.78693 -11.54594 -11.28585 -11.22381 -11.10101 -10.88297 -10.71586 -10.53434 -10.26883 -9.76906 -9.19433 -8.98040 -8.90662 -8.87434 -8.62535 -8.31514 -7.87044 -6.01176 -4.21669 0.90629 1.21359 2.10104 3.19583 3.20368 3.30757 3.32762 3.98405 4.17500 4.28956 4.66197 4.67361 4.92827 5.05275 5.26447 5.37817 5.43818 5.46113 5.49389 5.59847 5.75273 5.92900 6.00279 6.12678 6.27591 6.32113 6.44250 6.50659 6.58989 6.67889 6.73423 6.87187 7.07214 7.23435 7.53875 7.61286 7.95312 8.28237 8.50984 8.80279 9.10487 9.42352 10.87734 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.014962 B = 0.005066 C = 0.004710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.962506 B = 5525.877043 C = 5943.128107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.065 4.065 3 C -0.120 4.120 4 C -0.058 4.058 5 C -0.109 4.109 6 C 0.547 3.453 7 O -0.553 6.553 8 N -0.672 5.672 9 C 0.163 3.837 10 C 0.034 3.966 11 C -0.498 4.498 12 H 0.062 0.938 13 C 0.074 3.926 14 N -0.865 5.865 15 Si 0.892 3.108 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.282 1.282 19 C -0.198 4.198 20 C -0.212 4.212 21 C -0.075 4.075 22 C -0.045 4.045 23 Cl -0.069 7.069 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.135 0.865 28 H 0.141 0.859 29 H 0.397 0.603 30 H 0.020 0.980 31 H 0.120 0.880 32 H 0.263 0.737 33 H 0.080 0.920 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.574 1.527 5.078 14.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.066 4.066 3 C -0.138 4.138 4 C -0.077 4.077 5 C -0.113 4.113 6 C 0.332 3.668 7 O -0.434 6.434 8 N -0.318 5.318 9 C 0.040 3.960 10 C 0.034 3.966 11 C -0.535 4.535 12 H 0.080 0.920 13 C -0.130 4.130 14 N -0.501 5.501 15 Si 0.719 3.281 16 H -0.197 1.197 17 H -0.209 1.209 18 H -0.208 1.208 19 C -0.236 4.236 20 C -0.250 4.250 21 C -0.094 4.094 22 C -0.071 4.071 23 Cl -0.040 7.040 24 H 0.094 0.906 25 H 0.092 0.908 26 H 0.089 0.911 27 H 0.152 0.848 28 H 0.159 0.841 29 H 0.232 0.768 30 H 0.038 0.962 31 H 0.137 0.863 32 H 0.073 0.927 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.094 0.906 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -13.117 2.266 5.020 14.227 hybrid contribution -0.402 -1.072 -1.028 1.539 sum -13.520 1.194 3.992 14.147 Atomic orbital electron populations 1.20893 0.90321 1.03416 1.02956 1.19886 0.96693 0.91459 0.98608 1.20941 0.93848 0.97082 1.01938 1.21380 0.93589 0.98307 0.94421 1.20242 0.94669 0.93184 1.03187 1.17929 0.85877 0.84675 0.78327 1.90701 1.69473 1.31300 1.51947 1.45570 1.08990 1.08238 1.69016 1.21136 0.78128 0.98614 0.98086 1.19249 0.93997 0.91298 0.92085 1.20534 1.46764 0.94475 0.91731 0.92017 1.25005 0.94341 0.94843 0.98839 1.69860 1.46758 1.03063 1.30457 0.86533 0.78075 0.79544 0.83926 1.19701 1.20912 1.20819 1.22939 0.92495 1.03298 1.04906 1.22961 1.05566 0.99229 0.97208 1.21321 0.92032 0.98889 0.97155 1.20645 0.92076 0.86805 1.07611 1.98352 1.76420 1.32267 1.96997 0.90572 0.90783 0.91060 0.84761 0.84116 0.76824 0.96203 0.86271 0.92665 0.90190 0.91433 0.91331 0.90582 0.84187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.06 9.61 36.01 0.35 -0.71 16 2 C -0.07 -0.78 5.89 -104.50 -0.62 -1.40 16 3 C -0.12 -1.43 9.68 -39.65 -0.38 -1.82 16 4 C -0.06 -0.86 9.59 -39.18 -0.38 -1.24 16 5 C -0.11 -1.88 5.87 -104.97 -0.62 -2.50 16 6 C 0.55 11.54 7.76 -12.33 -0.10 11.44 16 7 O -0.55 -13.34 16.34 5.32 0.09 -13.25 16 8 N -0.67 -14.41 4.96 -61.25 -0.30 -14.71 16 9 C 0.16 3.82 4.62 -4.04 -0.02 3.81 16 10 C 0.03 0.80 2.04 -155.66 -0.32 0.48 16 11 C -0.50 -12.52 8.43 -34.44 -0.29 -12.81 16 12 H 0.06 1.56 7.82 -52.49 -0.41 1.15 16 13 C 0.07 1.90 5.31 -17.82 -0.09 1.80 16 14 N -0.87 -23.05 10.11 55.43 0.56 -22.49 16 15 Si 0.89 20.22 29.54 -169.99 -5.02 15.20 16 16 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 19 C -0.20 -4.26 9.96 -26.69 -0.27 -4.53 16 20 C -0.21 -4.34 9.92 -26.69 -0.26 -4.61 16 21 C -0.07 -1.15 9.30 -39.14 -0.36 -1.51 16 22 C -0.04 -0.61 6.31 -39.55 -0.25 -0.86 16 23 Cl -0.07 -0.85 27.27 -51.86 -1.41 -2.27 16 24 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.07 0.65 6.88 -51.93 -0.36 0.29 16 26 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 27 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 28 H 0.14 2.07 7.66 -52.49 -0.40 1.67 16 29 H 0.40 8.04 6.21 -40.82 -0.25 7.79 16 30 H 0.02 0.45 8.09 -51.93 -0.42 0.03 16 31 H 0.12 3.21 5.89 -51.93 -0.31 2.90 16 32 H 0.26 6.89 8.32 -40.82 -0.34 6.55 16 33 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 34 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 35 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 37 H 0.14 2.10 6.47 -52.49 -0.34 1.76 16 LS Contribution 328.03 15.07 4.94 4.94 Total: -1.00 -28.11 328.03 -9.34 -37.44 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -4.58 Total: 9.58 kcal Atomic # 6 Polarization: -10.84 SS G_CDS: -3.61 Total: -14.44 kcal Atomic # 7 Polarization: -37.45 SS G_CDS: 0.26 Total: -37.20 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: 0.09 Total: -13.25 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -1.41 Total: -2.27 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -28.11 -9.34 -37.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404093416.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.587 kcal (2) G-P(sol) polarization free energy of solvation -28.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds