Wall clock time and date at job start Tue Mar 31 2020 06:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38352 * 119.86247 * 2 1 4 4 C 1.37944 * 120.16330 * 179.97438 * 3 2 1 5 5 C 1.39596 * 119.87387 * 359.97438 * 4 3 2 6 6 C 1.47853 * 120.13576 * 180.02562 * 5 4 3 7 7 O 1.21552 * 120.00015 * 5.14259 * 6 5 4 8 8 N 1.34776 * 119.99973 * 185.15071 * 6 5 4 9 9 C 1.46504 * 119.99902 * 185.07348 * 8 6 5 10 10 C 1.52999 * 109.47021 * 184.99411 * 9 8 6 11 11 C 1.50696 * 115.55333 * 54.23952 * 10 9 8 12 12 H 1.08000 * 120.00181 * 215.59644 * 11 10 9 13 13 C 1.37880 * 119.99935 * 35.31325 * 11 10 9 14 14 N 1.31513 * 119.99705 * 355.78806 * 13 11 10 15 15 Si 1.86793 * 120.00156 * 175.78286 * 13 11 10 16 16 H 1.48506 * 109.46972 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.47451 * 120.00132 * 15 13 11 18 18 H 1.48495 * 109.47581 * 240.00297 * 15 13 11 19 19 C 1.52998 * 117.49578 * 199.91123 * 10 9 8 20 20 C 1.53001 * 117.49827 * 268.57006 * 10 9 8 21 21 C 1.39539 * 119.73003 * 0.27262 * 5 4 3 22 22 C 1.38112 * 119.83155 * 359.47302 * 21 5 4 23 23 Cl 1.73600 * 119.93806 * 180.25404 * 22 21 5 24 24 H 1.09003 * 109.47061 * 89.99720 * 1 2 3 25 25 H 1.08997 * 109.47495 * 210.00349 * 1 2 3 26 26 H 1.08999 * 109.46702 * 330.00121 * 1 2 3 27 27 H 1.08007 * 119.92025 * 359.97438 * 3 2 1 28 28 H 1.07995 * 120.06400 * 179.97438 * 4 3 2 29 29 H 0.97001 * 119.99956 * 5.07056 * 8 6 5 30 30 H 1.09004 * 109.46843 * 64.99539 * 9 8 6 31 31 H 1.08995 * 109.46892 * 304.99030 * 9 8 6 32 32 H 0.97008 * 119.99686 * 184.99314 * 14 13 11 33 33 H 1.09005 * 117.49438 * 214.99986 * 19 10 9 34 34 H 1.08997 * 117.50186 * 0.02562 * 19 10 9 35 35 H 1.08999 * 117.49998 * 359.97306 * 20 10 9 36 36 H 1.08999 * 117.50496 * 144.97300 * 20 10 9 37 37 H 1.07990 * 120.08495 * 179.72663 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1960 1.1998 0.0000 4 6 3.5754 1.2071 0.0005 5 6 4.2770 0.0003 0.0016 6 6 5.7556 0.0013 0.0028 7 8 6.3626 1.0502 0.0971 8 7 6.4303 -1.1608 -0.1010 9 6 7.8910 -1.1723 0.0117 10 6 8.4127 -2.5838 -0.2647 11 6 7.9746 -3.1945 -1.5708 12 1 7.7725 -4.2538 -1.6308 13 6 7.8262 -2.4001 -2.6879 14 7 7.9862 -1.0981 -2.5948 15 14 7.3981 -3.1731 -4.3336 16 1 7.2728 -4.6440 -4.1719 17 1 6.1102 -2.6177 -4.8214 18 1 8.4705 -2.8723 -5.3158 19 6 9.8136 -2.9310 0.2429 20 6 8.5812 -3.5216 0.9324 21 6 3.5774 -1.2070 -0.0036 22 6 2.1963 -1.2007 0.0012 23 17 1.3230 -2.7011 0.0014 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3634 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 1.6524 2.1331 -0.0004 28 1 4.1115 2.1445 0.0001 29 1 5.9488 -1.9895 -0.2502 30 1 8.1802 -0.8686 1.0178 31 1 8.3168 -0.4791 -0.7137 32 1 7.8113 -0.5317 -3.3627 33 1 10.4184 -3.6013 -0.3680 34 1 10.3634 -2.1541 0.7740 35 1 8.3208 -3.1330 1.9168 36 1 8.3748 -4.5803 0.7753 37 1 4.1144 -2.1439 -0.0073 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404093416.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:45 Heat of formation + Delta-G solvation = -14.193718 kcal Electronic energy + Delta-G solvation = -20951.717346 eV Core-core repulsion = 17719.677396 eV Total energy + Delta-G solvation = -3232.039949 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.17698 -39.66716 -38.40984 -37.40173 -34.97008 -34.18379 -33.73485 -31.80016 -28.99204 -27.68080 -26.79974 -23.86463 -23.34276 -22.92841 -21.19126 -21.09187 -19.22954 -17.97343 -17.24307 -16.76335 -16.37950 -16.13923 -16.04686 -15.93904 -15.30613 -15.07701 -14.91307 -14.65460 -14.01866 -13.64753 -13.44644 -13.26344 -13.23957 -12.95589 -12.85571 -12.60217 -12.39914 -12.30660 -12.26584 -12.04172 -11.89475 -11.56662 -10.97113 -10.82357 -10.65890 -10.17437 -10.00251 -9.80793 -9.55227 -7.95293 -6.21288 -0.25753 0.12718 1.05983 1.38270 1.44054 1.52380 1.87939 2.38791 2.45325 2.77580 3.06016 3.60298 3.66594 3.69703 3.99482 4.09171 4.23790 4.27498 4.45080 4.52799 4.64643 4.74120 4.75420 4.80332 4.82036 4.95901 5.00459 5.11707 5.20943 5.26212 5.33072 5.36269 5.52506 5.59762 5.69241 5.84264 5.98273 6.35836 6.75292 6.91984 7.43693 7.45369 8.90362 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.014962 B = 0.005066 C = 0.004710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.962506 B = 5525.877043 C = 5943.128107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.053 4.053 3 C -0.107 4.107 4 C -0.065 4.065 5 C -0.138 4.138 6 C 0.543 3.457 7 O -0.594 6.594 8 N -0.671 5.671 9 C 0.174 3.826 10 C 0.004 3.996 11 C -0.502 4.502 12 H 0.059 0.941 13 C 0.035 3.965 14 N -0.889 5.889 15 Si 0.945 3.055 16 H -0.265 1.265 17 H -0.284 1.284 18 H -0.287 1.287 19 C -0.198 4.198 20 C -0.186 4.186 21 C -0.080 4.080 22 C -0.054 4.054 23 Cl -0.057 7.057 24 H 0.089 0.911 25 H 0.076 0.924 26 H 0.096 0.904 27 H 0.174 0.826 28 H 0.136 0.864 29 H 0.401 0.599 30 H 0.020 0.980 31 H 0.083 0.917 32 H 0.256 0.744 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.097 0.983 5.431 17.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.054 4.054 3 C -0.125 4.125 4 C -0.084 4.084 5 C -0.141 4.141 6 C 0.330 3.670 7 O -0.478 6.478 8 N -0.317 5.317 9 C 0.050 3.950 10 C 0.004 3.996 11 C -0.539 4.539 12 H 0.077 0.923 13 C -0.167 4.167 14 N -0.526 5.526 15 Si 0.772 3.228 16 H -0.190 1.190 17 H -0.211 1.211 18 H -0.213 1.213 19 C -0.236 4.236 20 C -0.223 4.223 21 C -0.099 4.099 22 C -0.080 4.080 23 Cl -0.028 7.028 24 H 0.107 0.893 25 H 0.094 0.906 26 H 0.115 0.885 27 H 0.191 0.809 28 H 0.153 0.847 29 H 0.237 0.763 30 H 0.038 0.962 31 H 0.101 0.899 32 H 0.066 0.934 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -15.653 1.685 5.380 16.638 hybrid contribution 0.311 -0.921 -1.096 1.465 sum -15.342 0.764 4.284 15.947 Atomic orbital electron populations 1.21013 0.87529 1.04865 1.04149 1.20355 0.98611 0.90619 0.95805 1.21309 0.92458 0.98795 0.99957 1.21492 0.95067 0.97210 0.94642 1.19947 0.92178 0.95012 1.06988 1.18558 0.87712 0.83776 0.76909 1.90657 1.70859 1.32452 1.53810 1.45505 1.08274 1.08765 1.69185 1.20806 0.79313 0.98084 0.96801 1.19291 0.95648 0.91786 0.92908 1.20716 1.46303 0.94276 0.92652 0.92309 1.25582 0.94644 0.95078 1.01361 1.70055 1.48022 1.03971 1.30546 0.85696 0.77390 0.79072 0.80651 1.18951 1.21061 1.21306 1.22960 0.92194 1.03548 1.04927 1.22954 1.03535 0.99056 0.96728 1.21257 0.93059 0.98007 0.97599 1.20764 0.91531 0.88124 1.07619 1.98355 1.75843 1.31648 1.96935 0.89265 0.90560 0.88501 0.80864 0.84657 0.76299 0.96187 0.89938 0.93447 0.90387 0.90501 0.89643 0.89701 0.84658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.61 9.61 71.24 0.68 -0.92 16 2 C -0.05 -1.10 5.89 -19.79 -0.12 -1.22 16 3 C -0.11 -2.25 9.68 22.23 0.22 -2.04 16 4 C -0.06 -1.89 9.59 22.53 0.22 -1.68 16 5 C -0.14 -4.81 5.87 -20.09 -0.12 -4.93 16 6 C 0.54 23.85 7.76 86.79 0.67 24.53 16 7 O -0.59 -30.07 16.34 -3.88 -0.06 -30.13 16 8 N -0.67 -29.76 4.96 -465.96 -2.31 -32.07 16 9 C 0.17 8.40 4.62 86.38 0.40 8.80 16 10 C 0.00 0.20 2.04 -52.93 -0.11 0.09 16 11 C -0.50 -25.34 8.43 25.60 0.22 -25.13 16 12 H 0.06 2.94 7.82 -2.91 -0.02 2.92 16 13 C 0.04 1.81 5.31 84.66 0.45 2.26 16 14 N -0.89 -48.81 10.11 21.45 0.22 -48.60 16 15 Si 0.95 41.84 29.54 68.60 2.03 43.86 16 16 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 17 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 18 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 19 C -0.20 -8.40 9.96 30.62 0.30 -8.10 16 20 C -0.19 -7.33 9.92 30.62 0.30 -7.02 16 21 C -0.08 -2.44 9.30 22.55 0.21 -2.23 16 22 C -0.05 -1.37 6.31 22.29 0.14 -1.23 16 23 Cl -0.06 -1.28 27.27 -2.72 -0.07 -1.36 16 24 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.08 1.04 6.88 -2.39 -0.02 1.02 16 26 H 0.10 0.87 8.08 -2.39 -0.02 0.85 16 27 H 0.17 2.27 8.06 -2.91 -0.02 2.25 16 28 H 0.14 4.02 7.66 -2.91 -0.02 4.00 16 29 H 0.40 16.73 6.21 -92.71 -0.58 16.16 16 30 H 0.02 0.94 8.09 -2.38 -0.02 0.92 16 31 H 0.08 4.66 5.89 -2.39 -0.01 4.64 16 32 H 0.26 13.90 8.32 -92.70 -0.77 13.13 16 33 H 0.08 3.31 8.14 -2.38 -0.02 3.29 16 34 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16 35 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 36 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 37 H 0.14 4.13 6.47 -2.92 -0.02 4.11 16 Total: -1.00 -61.84 328.03 3.78 -58.05 By element: Atomic # 1 Polarization: 28.54 SS G_CDS: 0.52 Total: 29.06 kcal Atomic # 6 Polarization: -22.29 SS G_CDS: 3.47 Total: -18.82 kcal Atomic # 7 Polarization: -78.57 SS G_CDS: -2.10 Total: -80.67 kcal Atomic # 8 Polarization: -30.07 SS G_CDS: -0.06 Total: -30.13 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.86 kcal Atomic # 17 Polarization: -1.28 SS G_CDS: -0.07 Total: -1.36 kcal Total: -61.84 3.78 -58.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404093416.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.858 kcal (2) G-P(sol) polarization free energy of solvation -61.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds