Wall clock time and date at job start Tue Mar 31 2020 06:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.37909 * 119.93533 * 2 1 4 4 C 1.39590 * 119.86846 * 179.97438 * 3 2 1 5 5 C 1.47791 * 120.13448 * 179.97438 * 4 3 2 6 6 O 1.21564 * 119.99471 * 5.36953 * 5 4 3 7 7 N 1.34776 * 120.00033 * 185.37656 * 5 4 3 8 8 C 1.46498 * 119.99688 * 184.85695 * 7 5 4 9 9 C 1.53002 * 109.47231 * 184.74272 * 8 7 5 10 10 C 1.50700 * 115.54807 * 294.74592 * 9 8 7 11 11 H 1.07998 * 120.00243 * 122.47359 * 10 9 8 12 12 C 1.37883 * 119.99995 * 302.20227 * 10 9 8 13 13 N 1.31512 * 120.00172 * 173.42451 * 12 10 9 14 14 Si 1.86801 * 119.99956 * 353.41843 * 12 10 9 15 15 H 1.48500 * 109.46943 * 94.24780 * 14 12 10 16 16 H 1.48499 * 109.47285 * 214.24675 * 14 12 10 17 17 H 1.48500 * 109.47335 * 334.25314 * 14 12 10 18 18 C 1.52998 * 117.50048 * 80.41448 * 9 8 7 19 19 C 1.52998 * 117.50087 * 149.07548 * 9 8 7 20 20 C 1.39629 * 119.73836 * 0.25439 * 4 3 2 21 21 C 1.37880 * 119.86780 * 359.48890 * 20 4 3 22 22 C 1.38489 * 119.93442 * 179.97438 * 2 1 3 23 23 Cl 1.73603 * 119.86679 * 359.97438 * 22 2 1 24 24 H 1.08996 * 109.47350 * 89.99680 * 1 2 3 25 25 H 1.09003 * 109.47048 * 209.99894 * 1 2 3 26 26 H 1.09007 * 109.46745 * 329.99408 * 1 2 3 27 27 H 1.08003 * 120.06838 * 359.96376 * 3 2 1 28 28 H 0.96991 * 120.00005 * 4.85398 * 7 5 4 29 29 H 1.09001 * 109.47644 * 64.74215 * 8 7 5 30 30 H 1.08999 * 109.47359 * 304.74059 * 8 7 5 31 31 H 0.96997 * 120.00369 * 179.97438 * 13 12 10 32 32 H 1.08997 * 117.50076 * 215.00803 * 18 9 8 33 33 H 1.09000 * 117.49462 * 0.02562 * 18 9 8 34 34 H 1.08998 * 117.49729 * 359.97438 * 19 9 8 35 35 H 1.08996 * 117.49730 * 144.97390 * 19 9 8 36 36 H 1.07998 * 120.07166 * 179.74863 * 20 4 3 37 37 H 1.08001 * 119.93674 * 180.25016 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1953 1.1951 0.0000 4 6 3.5912 1.1935 0.0005 5 6 4.3346 2.4708 0.0000 6 8 3.7343 3.5234 0.0976 7 7 5.6780 2.4686 -0.1089 8 6 6.4235 3.7252 -0.0027 9 6 7.9057 3.4637 -0.2778 10 6 8.6088 2.5886 0.7277 11 1 9.0969 1.6807 0.4055 12 6 8.6337 2.9500 2.0581 13 7 9.1326 2.1265 2.9539 14 14 7.9590 4.6093 2.5880 15 1 6.5420 4.4570 3.0055 16 1 8.7578 5.1275 3.7275 17 1 8.0405 5.5625 1.4522 18 6 8.3442 3.3532 -1.7394 19 6 8.7148 4.5921 -0.9203 20 6 4.2824 -0.0197 -0.0043 21 6 3.5834 -1.2082 0.0011 22 6 2.1981 -1.2001 0.0005 23 17 1.3249 -2.7006 0.0019 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5140 27 1 1.6553 2.1305 -0.0006 28 1 6.1511 1.6350 -0.2575 29 1 6.3068 4.1333 1.0013 30 1 6.0390 4.4385 -0.7317 31 1 9.1505 2.3809 3.8898 32 1 9.1411 2.6476 -1.9738 33 1 7.5767 3.4673 -2.5050 34 1 8.1910 5.5207 -1.1475 35 1 9.7555 4.7018 -0.6155 36 1 5.3623 -0.0273 -0.0080 37 1 4.1169 -2.1473 0.0014 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404110750.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:56 Heat of formation + Delta-G solvation = -0.650821 kcal Electronic energy + Delta-G solvation = -20667.077132 eV Core-core repulsion = 17435.624447 eV Total energy + Delta-G solvation = -3231.452685 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.13542 -38.58755 -37.06105 -36.51980 -33.81916 -32.81168 -32.26207 -31.02893 -27.50600 -26.71791 -25.33567 -23.29694 -22.13595 -21.62341 -19.86133 -19.27209 -17.68262 -16.67791 -16.46599 -15.84327 -15.35864 -14.95657 -14.61412 -14.54597 -14.09151 -13.88928 -13.49055 -13.11502 -12.97569 -12.63174 -12.59453 -12.38500 -12.23618 -12.08174 -11.58214 -11.47635 -11.11346 -10.88693 -10.72912 -10.61428 -10.31627 -9.80093 -9.50834 -9.26113 -9.04065 -8.92715 -8.80633 -8.54989 -8.34636 -6.24463 -4.26361 0.65104 1.14202 1.91758 2.90562 3.23576 3.34601 3.39391 3.55542 3.82111 4.32500 4.53816 4.60558 4.73011 4.96388 5.09099 5.12539 5.17002 5.35776 5.41828 5.43791 5.61268 5.71584 5.88697 5.89593 6.03652 6.08251 6.12099 6.15482 6.22941 6.39692 6.44319 6.57892 6.64620 6.84208 6.97363 7.07758 7.60343 8.02732 8.34683 8.59469 8.77299 9.39196 10.86365 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.021224 B = 0.003965 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.919808 B = 7060.582852 C = 7278.294831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.088 4.088 3 C -0.053 4.053 4 C -0.116 4.116 5 C 0.548 3.452 6 O -0.552 6.552 7 N -0.693 5.693 8 C 0.151 3.849 9 C -0.017 4.017 10 C -0.492 4.492 11 H 0.079 0.921 12 C 0.085 3.915 13 N -0.889 5.889 14 Si 0.868 3.132 15 H -0.277 1.277 16 H -0.292 1.292 17 H -0.252 1.252 18 C -0.181 4.181 19 C -0.188 4.188 20 C -0.076 4.076 21 C -0.112 4.112 22 C -0.020 4.020 23 Cl -0.069 7.069 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.144 0.856 28 H 0.407 0.593 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.267 0.733 32 H 0.086 0.914 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.089 0.911 36 H 0.144 0.856 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.693 -6.386 -6.931 16.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.089 4.089 3 C -0.072 4.072 4 C -0.119 4.119 5 C 0.334 3.666 6 O -0.432 6.432 7 N -0.342 5.342 8 C 0.028 3.972 9 C -0.018 4.018 10 C -0.529 4.529 11 H 0.097 0.903 12 C -0.119 4.119 13 N -0.525 5.525 14 Si 0.696 3.304 15 H -0.204 1.204 16 H -0.218 1.218 17 H -0.176 1.176 18 C -0.218 4.218 19 C -0.226 4.226 20 C -0.095 4.095 21 C -0.131 4.131 22 C -0.047 4.047 23 Cl -0.040 7.040 24 H 0.094 0.906 25 H 0.092 0.908 26 H 0.091 0.909 27 H 0.162 0.838 28 H 0.244 0.756 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.104 0.896 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.108 0.892 36 H 0.161 0.839 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -14.101 -5.793 -6.639 16.627 hybrid contribution 0.019 0.314 0.464 0.561 sum -14.081 -5.479 -6.175 16.323 Atomic orbital electron populations 1.20864 0.89946 1.03598 1.02976 1.19695 0.96948 0.91028 1.01241 1.21104 0.92700 0.97770 0.95676 1.20190 0.94304 0.93640 1.03777 1.18182 0.82599 0.88356 0.77438 1.90733 1.68746 1.32552 1.51143 1.45798 1.05424 1.12278 1.70712 1.21167 0.91321 0.84402 1.00279 1.19592 0.90251 0.99020 0.92981 1.20250 1.34633 1.07888 0.90113 0.90292 1.24908 0.94115 0.96523 0.96389 1.69880 1.45098 1.35553 1.01978 0.87043 0.78726 0.85675 0.78955 1.20401 1.21846 1.17590 1.22788 1.03029 1.01490 0.94474 1.23066 1.01358 0.91975 1.06232 1.21445 1.00880 0.90833 0.96355 1.20996 0.91696 0.99349 1.01048 1.21021 0.92437 0.86645 1.04559 1.98356 1.76619 1.32290 1.96739 0.90612 0.90791 0.90854 0.83846 0.75597 0.92411 0.92757 0.92357 0.89578 0.90839 0.91109 0.89209 0.83864 0.84208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.05 9.61 36.01 0.35 -0.70 16 2 C -0.09 -1.03 5.88 -104.65 -0.62 -1.65 16 3 C -0.05 -0.73 9.24 -39.20 -0.36 -1.09 16 4 C -0.12 -1.77 5.87 -104.97 -0.62 -2.38 16 5 C 0.55 10.24 7.76 -12.35 -0.10 10.14 16 6 O -0.55 -11.87 16.34 5.31 0.09 -11.78 16 7 N -0.69 -13.15 5.42 -61.27 -0.33 -13.49 16 8 C 0.15 3.20 5.07 -4.04 -0.02 3.18 16 9 C -0.02 -0.37 0.85 -155.66 -0.13 -0.50 16 10 C -0.49 -12.53 9.20 -34.44 -0.32 -12.85 16 11 H 0.08 2.17 8.06 -52.49 -0.42 1.75 16 12 C 0.08 2.29 5.46 -17.82 -0.10 2.19 16 13 N -0.89 -25.58 13.96 55.43 0.77 -24.80 16 14 Si 0.87 21.09 24.64 -169.99 -4.19 16.90 16 15 H -0.28 -6.90 6.96 56.52 0.39 -6.51 16 16 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 17 H -0.25 -5.79 6.18 56.52 0.35 -5.44 16 18 C -0.18 -3.36 9.96 -26.70 -0.27 -3.63 16 19 C -0.19 -3.74 8.80 -26.69 -0.23 -3.97 16 20 C -0.08 -1.01 9.52 -39.19 -0.37 -1.38 16 21 C -0.11 -1.32 9.81 -39.60 -0.39 -1.70 16 22 C -0.02 -0.23 6.32 -39.38 -0.25 -0.48 16 23 Cl -0.07 -0.70 27.27 -51.86 -1.41 -2.12 16 24 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.07 0.62 6.89 -51.93 -0.36 0.27 16 26 H 0.07 0.59 8.08 -51.92 -0.42 0.17 16 27 H 0.14 1.90 7.66 -52.48 -0.40 1.50 16 28 H 0.41 7.11 6.43 -40.82 -0.26 6.85 16 29 H 0.06 1.35 4.13 -51.93 -0.21 1.14 16 30 H 0.05 1.10 8.06 -51.93 -0.42 0.68 16 31 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 32 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 33 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 34 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.09 1.82 8.14 -51.93 -0.42 1.40 16 36 H 0.14 1.79 6.47 -52.49 -0.34 1.45 16 37 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 324.06 15.07 4.88 4.88 Total: -1.00 -29.61 324.06 -8.18 -37.79 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -4.57 Total: 7.44 kcal Atomic # 6 Polarization: -11.41 SS G_CDS: -3.42 Total: -14.83 kcal Atomic # 7 Polarization: -38.73 SS G_CDS: 0.44 Total: -38.29 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: 0.09 Total: -11.78 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.19 Total: 16.90 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -1.41 Total: -2.12 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.61 -8.18 -37.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404110750.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.138 kcal (2) G-P(sol) polarization free energy of solvation -29.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds