Wall clock time and date at job start Tue Mar 31 2020 06:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38363 * 119.91803 * 2 1 4 4 C 1.38452 * 120.27408 * 180.02562 * 3 2 1 5 5 Cl 1.73597 * 119.93726 * 179.97438 * 4 3 2 6 6 C 1.38094 * 120.12257 * 359.69237 * 4 3 2 7 7 C 1.39548 * 119.83396 * 0.56186 * 6 4 3 8 8 C 1.47849 * 120.13592 * 179.74481 * 7 6 4 9 9 O 1.21556 * 119.99870 * 185.09273 * 8 7 6 10 10 N 1.34775 * 120.00283 * 5.09824 * 8 7 6 11 11 C 1.46494 * 120.00208 * 184.85975 * 10 8 7 12 12 C 1.52999 * 109.47141 * 184.73810 * 11 10 8 13 13 C 1.50704 * 115.55131 * 294.73940 * 12 11 10 14 14 H 1.08007 * 119.99391 * 122.47501 * 13 12 11 15 15 C 1.37873 * 120.00040 * 302.20447 * 13 12 11 16 16 N 1.31517 * 119.99382 * 173.41797 * 15 13 12 17 17 Si 1.86797 * 120.00184 * 353.41816 * 15 13 12 18 18 H 1.48506 * 109.46938 * 94.24759 * 17 15 13 19 19 H 1.48494 * 109.47168 * 214.24488 * 17 15 13 20 20 H 1.48497 * 109.47159 * 334.24961 * 17 15 13 21 21 C 1.53003 * 117.49903 * 80.41526 * 12 11 10 22 22 C 1.53005 * 117.49835 * 149.07382 * 12 11 10 23 23 C 1.37944 * 119.92009 * 180.02562 * 2 1 3 24 24 H 1.08999 * 109.46753 * 269.97752 * 1 2 3 25 25 H 1.09004 * 109.46905 * 29.97716 * 1 2 3 26 26 H 1.08999 * 109.47353 * 149.97808 * 1 2 3 27 27 H 1.07993 * 119.86097 * 0.02562 * 3 2 1 28 28 H 1.07997 * 120.08461 * 180.27804 * 6 4 3 29 29 H 0.97003 * 120.00010 * 4.84954 * 10 8 7 30 30 H 1.09007 * 109.47340 * 64.73954 * 11 10 8 31 31 H 1.08997 * 109.47281 * 304.73610 * 11 10 8 32 32 H 0.97011 * 119.99751 * 179.97438 * 16 15 13 33 33 H 1.09000 * 117.49843 * 214.99946 * 21 12 11 34 34 H 1.08993 * 117.49703 * 0.02562 * 21 12 11 35 35 H 1.09000 * 117.49746 * 359.97438 * 22 12 11 36 36 H 1.08997 * 117.49821 * 144.97175 * 22 12 11 37 37 H 1.07996 * 120.05668 * 359.95332 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1972 1.1992 0.0000 4 6 3.5816 1.2078 -0.0005 5 17 4.4386 2.7175 -0.0012 6 6 4.2821 0.0177 0.0053 7 6 3.5910 -1.1946 0.0000 8 6 4.3342 -2.4727 0.0005 9 8 3.7337 -3.5250 -0.0976 10 7 5.6775 -2.4711 0.1099 11 6 6.4226 -3.7279 0.0036 12 6 7.9048 -3.4670 0.2793 13 6 8.6087 -2.5920 -0.7257 14 1 9.0970 -1.6843 -0.4030 15 6 8.6340 -2.9531 -2.0560 16 7 9.1336 -2.1295 -2.9514 17 14 7.9588 -4.6120 -2.5866 18 1 6.5421 -4.4590 -3.0047 19 1 8.7579 -5.1302 -3.7260 20 1 8.0396 -5.5655 -1.4511 21 6 8.3428 -3.3571 1.7412 22 6 8.7132 -4.5960 0.9219 23 6 2.1951 -1.1956 -0.0005 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3634 -0.8898 -0.5142 27 1 1.6536 2.1324 0.0004 28 1 5.3620 0.0252 0.0095 29 1 6.1510 -1.6377 0.2589 30 1 6.3061 -4.1356 -1.0006 31 1 6.0376 -4.4413 0.7323 32 1 9.1517 -2.3836 -3.8875 33 1 9.1400 -2.6519 1.9761 34 1 7.5751 -3.4711 2.5065 35 1 8.1890 -5.5244 1.1486 36 1 9.7540 -4.7060 0.6175 37 1 1.6548 -2.1306 -0.0002 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404126403.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:02 Heat of formation + Delta-G solvation = -1.405964 kcal Electronic energy + Delta-G solvation = -20735.557507 eV Core-core repulsion = 17504.072076 eV Total energy + Delta-G solvation = -3231.485431 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.13637 -38.54889 -37.02745 -36.51569 -33.81025 -32.72957 -32.24205 -30.99783 -27.50688 -26.80427 -25.36229 -23.37610 -21.98414 -21.61323 -19.87973 -19.27566 -17.71394 -16.56381 -16.28844 -15.75074 -15.34799 -15.15769 -14.72706 -14.56676 -13.96170 -13.93072 -13.53895 -13.06600 -12.93729 -12.90431 -12.57617 -12.37473 -12.20142 -11.85189 -11.53925 -11.27394 -11.10929 -11.05114 -10.71645 -10.60069 -10.30441 -9.79861 -9.49912 -9.24739 -9.04958 -8.89522 -8.78723 -8.53267 -8.35329 -6.22365 -4.24207 0.72724 1.04807 2.01266 2.91386 3.24597 3.35505 3.40300 3.55138 3.80415 4.33973 4.51354 4.63061 4.82127 4.96171 5.05629 5.12279 5.18061 5.20516 5.38124 5.49252 5.57886 5.63392 5.80437 5.89981 5.99221 6.09839 6.15452 6.15917 6.26578 6.41005 6.45415 6.57168 6.65787 6.85340 6.98040 7.08889 7.62072 8.02550 8.36757 8.58891 8.79615 9.41126 10.88473 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.016040 B = 0.004791 C = 0.004363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.211989 B = 5843.349885 C = 6416.459606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.086 4.086 3 C -0.094 4.094 4 C -0.037 4.037 5 Cl -0.065 7.065 6 C -0.080 4.080 7 C -0.108 4.108 8 C 0.550 3.450 9 O -0.550 6.550 10 N -0.693 5.693 11 C 0.151 3.849 12 C -0.018 4.018 13 C -0.492 4.492 14 H 0.079 0.921 15 C 0.084 3.916 16 N -0.889 5.889 17 Si 0.868 3.132 18 H -0.277 1.277 19 H -0.292 1.292 20 H -0.252 1.252 21 C -0.181 4.181 22 C -0.188 4.188 23 C -0.061 4.061 24 H 0.074 0.926 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.135 0.865 28 H 0.144 0.856 29 H 0.408 0.592 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.266 0.734 33 H 0.086 0.914 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.089 0.911 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.966 6.358 6.936 16.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.087 4.087 3 C -0.112 4.112 4 C -0.064 4.064 5 Cl -0.036 7.036 6 C -0.100 4.100 7 C -0.111 4.111 8 C 0.336 3.664 9 O -0.430 6.430 10 N -0.342 5.342 11 C 0.028 3.972 12 C -0.019 4.019 13 C -0.528 4.528 14 H 0.097 0.903 15 C -0.120 4.120 16 N -0.525 5.525 17 Si 0.696 3.304 18 H -0.204 1.204 19 H -0.219 1.219 20 H -0.176 1.176 21 C -0.218 4.218 22 C -0.226 4.226 23 C -0.080 4.080 24 H 0.092 0.908 25 H 0.088 0.912 26 H 0.090 0.910 27 H 0.153 0.847 28 H 0.162 0.838 29 H 0.244 0.756 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.104 0.896 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.108 0.892 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -14.212 5.765 6.643 16.714 hybrid contribution 0.184 -0.299 -0.467 0.584 sum -14.027 5.467 6.176 16.273 Atomic orbital electron populations 1.20791 0.90074 1.03267 1.02720 1.19802 0.96605 0.92009 1.00235 1.21070 0.91874 0.98714 0.99591 1.20756 0.92464 0.87329 1.05809 1.98385 1.77200 1.31028 1.96946 1.21372 1.01116 0.90091 0.97392 1.20020 0.94280 0.92909 1.03886 1.18134 0.82601 0.88230 0.77476 1.90732 1.68719 1.32409 1.51190 1.45814 1.05432 1.12333 1.70604 1.21177 0.91357 0.84352 1.00302 1.19597 0.90242 0.99030 0.93011 1.20253 1.34578 1.07896 0.90122 0.90274 1.24908 0.94141 0.96512 0.96392 1.69892 1.45082 1.35514 1.01968 0.87045 0.78728 0.85699 0.78950 1.20402 1.21851 1.17590 1.22790 1.03034 1.01487 0.94467 1.23067 1.01353 0.91956 1.06229 1.21252 0.92667 0.98556 0.95495 0.90778 0.91211 0.90972 0.84708 0.83806 0.75579 0.92378 0.92715 0.92376 0.89565 0.90837 0.91114 0.89207 0.84126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.85 10.01 36.01 0.36 -0.49 16 2 C -0.09 -0.94 5.87 -104.68 -0.61 -1.55 16 3 C -0.09 -1.02 9.47 -39.46 -0.37 -1.39 16 4 C -0.04 -0.47 6.31 -39.56 -0.25 -0.72 16 5 Cl -0.06 -0.78 28.95 -51.86 -1.50 -2.28 16 6 C -0.08 -1.15 9.30 -39.15 -0.36 -1.51 16 7 C -0.11 -1.67 5.87 -104.97 -0.62 -2.29 16 8 C 0.55 10.41 7.76 -12.33 -0.10 10.32 16 9 O -0.55 -11.88 16.34 5.32 0.09 -11.79 16 10 N -0.69 -13.45 5.42 -61.25 -0.33 -13.78 16 11 C 0.15 3.24 5.07 -4.05 -0.02 3.21 16 12 C -0.02 -0.38 0.85 -155.65 -0.13 -0.52 16 13 C -0.49 -12.70 9.20 -34.44 -0.32 -13.02 16 14 H 0.08 2.21 8.06 -52.48 -0.42 1.79 16 15 C 0.08 2.31 5.46 -17.82 -0.10 2.21 16 16 N -0.89 -25.85 13.96 55.43 0.77 -25.08 16 17 Si 0.87 21.26 24.64 -169.99 -4.19 17.07 16 18 H -0.28 -6.95 6.96 56.52 0.39 -6.56 16 19 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 20 H -0.25 -5.84 6.18 56.52 0.35 -5.49 16 21 C -0.18 -3.41 9.96 -26.69 -0.27 -3.68 16 22 C -0.19 -3.77 8.80 -26.69 -0.23 -4.00 16 23 C -0.06 -0.81 9.24 -39.19 -0.36 -1.17 16 24 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 26 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 27 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 28 H 0.14 2.06 6.47 -52.49 -0.34 1.72 16 29 H 0.41 7.40 6.44 -40.82 -0.26 7.14 16 30 H 0.06 1.37 4.13 -51.92 -0.21 1.16 16 31 H 0.05 1.12 8.06 -51.93 -0.42 0.70 16 32 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 33 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 34 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 35 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.09 1.84 8.14 -51.93 -0.42 1.41 16 37 H 0.14 1.84 7.66 -52.49 -0.40 1.44 16 LS Contribution 326.78 15.07 4.92 4.92 Total: -1.00 -29.93 326.78 -8.25 -38.18 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -4.63 Total: 7.36 kcal Atomic # 6 Polarization: -11.22 SS G_CDS: -3.38 Total: -14.61 kcal Atomic # 7 Polarization: -39.30 SS G_CDS: 0.44 Total: -38.86 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: 0.09 Total: -11.79 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.19 Total: 17.07 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -1.50 Total: -2.28 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.93 -8.25 -38.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404126403.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.772 kcal (2) G-P(sol) polarization free energy of solvation -29.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds