Wall clock time and date at job start Tue Mar 31 2020 06:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38363 * 119.91803 * 2 1 4 4 C 1.38452 * 120.27408 * 180.02562 * 3 2 1 5 5 Cl 1.73597 * 119.93726 * 179.97438 * 4 3 2 6 6 C 1.38094 * 120.12257 * 359.69237 * 4 3 2 7 7 C 1.39548 * 119.83396 * 0.56186 * 6 4 3 8 8 C 1.47849 * 120.13592 * 179.74481 * 7 6 4 9 9 O 1.21556 * 119.99870 * 185.09273 * 8 7 6 10 10 N 1.34775 * 120.00283 * 5.09824 * 8 7 6 11 11 C 1.46494 * 120.00208 * 184.85975 * 10 8 7 12 12 C 1.52999 * 109.47141 * 184.73810 * 11 10 8 13 13 C 1.50704 * 115.55131 * 294.73940 * 12 11 10 14 14 H 1.08007 * 119.99391 * 122.47501 * 13 12 11 15 15 C 1.37873 * 120.00040 * 302.20447 * 13 12 11 16 16 N 1.31517 * 119.99382 * 173.41797 * 15 13 12 17 17 Si 1.86797 * 120.00184 * 353.41816 * 15 13 12 18 18 H 1.48506 * 109.46938 * 94.24759 * 17 15 13 19 19 H 1.48494 * 109.47168 * 214.24488 * 17 15 13 20 20 H 1.48497 * 109.47159 * 334.24961 * 17 15 13 21 21 C 1.53003 * 117.49903 * 80.41526 * 12 11 10 22 22 C 1.53005 * 117.49835 * 149.07382 * 12 11 10 23 23 C 1.37944 * 119.92009 * 180.02562 * 2 1 3 24 24 H 1.08999 * 109.46753 * 269.97752 * 1 2 3 25 25 H 1.09004 * 109.46905 * 29.97716 * 1 2 3 26 26 H 1.08999 * 109.47353 * 149.97808 * 1 2 3 27 27 H 1.07993 * 119.86097 * 0.02562 * 3 2 1 28 28 H 1.07997 * 120.08461 * 180.27804 * 6 4 3 29 29 H 0.97003 * 120.00010 * 4.84954 * 10 8 7 30 30 H 1.09007 * 109.47340 * 64.73954 * 11 10 8 31 31 H 1.08997 * 109.47281 * 304.73610 * 11 10 8 32 32 H 0.97011 * 119.99751 * 179.97438 * 16 15 13 33 33 H 1.09000 * 117.49843 * 214.99946 * 21 12 11 34 34 H 1.08993 * 117.49703 * 0.02562 * 21 12 11 35 35 H 1.09000 * 117.49746 * 359.97438 * 22 12 11 36 36 H 1.08997 * 117.49821 * 144.97175 * 22 12 11 37 37 H 1.07996 * 120.05668 * 359.95332 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1972 1.1992 0.0000 4 6 3.5816 1.2078 -0.0005 5 17 4.4386 2.7175 -0.0012 6 6 4.2821 0.0177 0.0053 7 6 3.5910 -1.1946 0.0000 8 6 4.3342 -2.4727 0.0005 9 8 3.7337 -3.5250 -0.0976 10 7 5.6775 -2.4711 0.1099 11 6 6.4226 -3.7279 0.0036 12 6 7.9048 -3.4670 0.2793 13 6 8.6087 -2.5920 -0.7257 14 1 9.0970 -1.6843 -0.4030 15 6 8.6340 -2.9531 -2.0560 16 7 9.1336 -2.1295 -2.9514 17 14 7.9588 -4.6120 -2.5866 18 1 6.5421 -4.4590 -3.0047 19 1 8.7579 -5.1302 -3.7260 20 1 8.0396 -5.5655 -1.4511 21 6 8.3428 -3.3571 1.7412 22 6 8.7132 -4.5960 0.9219 23 6 2.1951 -1.1956 -0.0005 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3634 -0.8898 -0.5142 27 1 1.6536 2.1324 0.0004 28 1 5.3620 0.0252 0.0095 29 1 6.1510 -1.6377 0.2589 30 1 6.3061 -4.1356 -1.0006 31 1 6.0376 -4.4413 0.7323 32 1 9.1517 -2.3836 -3.8875 33 1 9.1400 -2.6519 1.9761 34 1 7.5751 -3.4711 2.5065 35 1 8.1890 -5.5244 1.1486 36 1 9.7540 -4.7060 0.6175 37 1 1.6548 -2.1306 -0.0002 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404126403.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:02 Heat of formation + Delta-G solvation = -19.122128 kcal Electronic energy + Delta-G solvation = -20736.325737 eV Core-core repulsion = 17504.072076 eV Total energy + Delta-G solvation = -3232.253661 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.40028 -39.83264 -38.65471 -37.51190 -35.28667 -34.31610 -33.76197 -32.04786 -28.89377 -27.93571 -27.18043 -24.64187 -23.20081 -22.96883 -21.37590 -20.92347 -19.15501 -18.20473 -17.50979 -17.15751 -16.96624 -16.28541 -16.15715 -16.00075 -15.41122 -15.01527 -14.93029 -14.79243 -14.30248 -14.03424 -13.91699 -13.69743 -13.26903 -13.04148 -12.73321 -12.66014 -12.53023 -12.26196 -12.18701 -12.10143 -12.03883 -11.54135 -11.20439 -11.04032 -10.75235 -10.40026 -10.16730 -9.87281 -9.76614 -8.34450 -6.36603 -0.35531 0.05137 1.02273 1.27653 1.34700 1.43846 1.67067 2.11501 2.30304 2.61948 2.94132 3.33637 3.53776 3.63179 3.96549 3.99056 4.07258 4.15314 4.23951 4.25840 4.43333 4.46520 4.56040 4.73614 4.77435 4.86601 4.90551 5.00115 5.02228 5.12973 5.18517 5.22342 5.37393 5.41079 5.51963 5.64874 5.65690 6.27093 6.51384 6.70173 7.09404 7.30661 8.79899 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.016040 B = 0.004791 C = 0.004363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.211989 B = 5843.349885 C = 6416.459606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.075 4.075 3 C -0.080 4.080 4 C -0.043 4.043 5 Cl -0.061 7.061 6 C -0.091 4.091 7 C -0.129 4.129 8 C 0.548 3.452 9 O -0.582 6.582 10 N -0.696 5.696 11 C 0.156 3.844 12 C -0.045 4.045 13 C -0.477 4.477 14 H 0.047 0.953 15 C 0.037 3.963 16 N -0.936 5.936 17 Si 0.916 3.084 18 H -0.290 1.290 19 H -0.295 1.295 20 H -0.228 1.228 21 C -0.156 4.156 22 C -0.181 4.181 23 C -0.067 4.067 24 H 0.090 0.910 25 H 0.090 0.910 26 H 0.075 0.925 27 H 0.167 0.833 28 H 0.134 0.866 29 H 0.411 0.589 30 H 0.034 0.966 31 H 0.068 0.932 32 H 0.265 0.735 33 H 0.086 0.914 34 H 0.099 0.901 35 H 0.093 0.907 36 H 0.084 0.916 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.073 6.567 8.418 19.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.076 4.076 3 C -0.099 4.099 4 C -0.070 4.070 5 Cl -0.032 7.032 6 C -0.110 4.110 7 C -0.132 4.132 8 C 0.337 3.663 9 O -0.464 6.464 10 N -0.345 5.345 11 C 0.033 3.967 12 C -0.046 4.046 13 C -0.514 4.514 14 H 0.065 0.935 15 C -0.162 4.162 16 N -0.575 5.575 17 Si 0.743 3.257 18 H -0.217 1.217 19 H -0.222 1.222 20 H -0.151 1.151 21 C -0.193 4.193 22 C -0.220 4.220 23 C -0.086 4.086 24 H 0.109 0.891 25 H 0.108 0.892 26 H 0.094 0.906 27 H 0.185 0.815 28 H 0.152 0.848 29 H 0.248 0.752 30 H 0.052 0.948 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.105 0.895 34 H 0.118 0.882 35 H 0.111 0.889 36 H 0.102 0.898 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -16.311 5.977 8.158 19.192 hybrid contribution 0.797 -0.240 -0.858 1.196 sum -15.514 5.737 7.299 18.080 Atomic orbital electron populations 1.20901 0.87201 1.04531 1.04125 1.20166 0.98462 0.90834 0.98098 1.21466 0.91079 1.00089 0.97265 1.20860 0.93330 0.86890 1.05901 1.98387 1.77376 1.30464 1.96931 1.21286 1.00787 0.90573 0.98378 1.19795 0.95040 0.91535 1.06847 1.18638 0.82306 0.89172 0.76219 1.90696 1.69185 1.33859 1.52707 1.45820 1.05826 1.11958 1.70875 1.21010 0.91102 0.85399 0.99231 1.19455 0.90400 1.00566 0.94170 1.20377 1.33162 1.07049 0.90820 0.93482 1.25519 0.94855 0.99072 0.96758 1.70007 1.47837 1.37373 1.02238 0.86271 0.77093 0.83196 0.79105 1.21742 1.22249 1.15071 1.22838 1.03054 1.00411 0.92948 1.23111 1.00785 0.92800 1.05267 1.21392 0.91792 0.99792 0.95609 0.89140 0.89157 0.90585 0.81509 0.84796 0.75161 0.94828 0.91376 0.92599 0.89504 0.88236 0.88854 0.89786 0.84207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.26 10.01 71.24 0.71 -0.55 16 2 C -0.08 -1.43 5.87 -19.90 -0.12 -1.54 16 3 C -0.08 -1.51 9.47 22.35 0.21 -1.30 16 4 C -0.04 -1.03 6.31 22.29 0.14 -0.89 16 5 Cl -0.06 -1.39 28.95 -2.72 -0.08 -1.47 16 6 C -0.09 -2.59 9.30 22.55 0.21 -2.38 16 7 C -0.13 -4.00 5.87 -20.09 -0.12 -4.12 16 8 C 0.55 20.98 7.76 86.79 0.67 21.66 16 9 O -0.58 -25.32 16.34 -3.89 -0.06 -25.38 16 10 N -0.70 -27.19 5.42 -465.98 -2.52 -29.72 16 11 C 0.16 6.58 5.07 86.38 0.44 7.02 16 12 C -0.04 -1.91 0.85 -52.92 -0.04 -1.96 16 13 C -0.48 -25.04 9.20 25.60 0.24 -24.80 16 14 H 0.05 2.72 8.06 -2.91 -0.02 2.70 16 15 C 0.04 2.07 5.46 84.65 0.46 2.54 16 16 N -0.94 -56.28 13.96 21.45 0.30 -55.98 16 17 Si 0.92 44.48 24.64 68.60 1.69 46.17 16 18 H -0.29 -14.57 6.96 99.48 0.69 -13.88 16 19 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 20 H -0.23 -10.04 6.18 99.48 0.61 -9.43 16 21 C -0.16 -5.52 9.96 30.62 0.30 -5.22 16 22 C -0.18 -6.84 8.80 30.62 0.27 -6.57 16 23 C -0.07 -1.71 9.24 22.53 0.21 -1.51 16 24 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.09 0.70 8.08 -2.39 -0.02 0.69 16 26 H 0.08 0.85 8.08 -2.39 -0.02 0.83 16 27 H 0.17 2.07 8.06 -2.91 -0.02 2.05 16 28 H 0.13 3.98 6.47 -2.91 -0.02 3.96 16 29 H 0.41 15.26 6.44 -92.71 -0.60 14.66 16 30 H 0.03 1.58 4.13 -2.38 -0.01 1.58 16 31 H 0.07 2.67 8.06 -2.39 -0.02 2.65 16 32 H 0.26 15.21 8.31 -92.70 -0.77 14.44 16 33 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 34 H 0.10 3.05 8.14 -2.39 -0.02 3.03 16 35 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 36 H 0.08 3.27 8.14 -2.39 -0.02 3.25 16 37 H 0.14 3.56 7.66 -2.91 -0.02 3.54 16 Total: -1.00 -65.93 326.78 3.30 -62.62 By element: Atomic # 1 Polarization: 22.99 SS G_CDS: 0.39 Total: 23.38 kcal Atomic # 6 Polarization: -23.21 SS G_CDS: 3.59 Total: -19.62 kcal Atomic # 7 Polarization: -83.48 SS G_CDS: -2.22 Total: -85.70 kcal Atomic # 8 Polarization: -25.32 SS G_CDS: -0.06 Total: -25.38 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 1.69 Total: 46.17 kcal Atomic # 17 Polarization: -1.39 SS G_CDS: -0.08 Total: -1.47 kcal Total: -65.93 3.30 -62.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404126403.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.502 kcal (2) G-P(sol) polarization free energy of solvation -65.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds