Wall clock time and date at job start Tue Mar 31 2020 06:51:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37913 * 120.07044 * 2 1 4 4 C 1.38495 * 120.13443 * 180.27454 * 3 2 1 5 5 Cl 1.73603 * 119.86855 * 179.71822 * 4 3 2 6 6 C 1.38529 * 120.26065 * 359.74340 * 4 3 2 7 7 C 1.37877 * 120.13616 * 0.02562 * 6 4 3 8 8 C 1.39592 * 120.06415 * 179.76223 * 2 1 3 9 9 C 1.47786 * 120.13177 * 0.02562 * 8 2 1 10 10 O 1.21562 * 119.99870 * 352.99886 * 9 8 2 11 11 N 1.34778 * 120.00019 * 173.27011 * 9 8 2 12 12 C 1.46499 * 120.00088 * 184.75981 * 11 9 8 13 13 C 1.52997 * 109.47289 * 175.00517 * 12 11 9 14 14 C 1.50706 * 115.55015 * 305.60054 * 13 12 11 15 15 H 1.07992 * 120.00153 * 144.25731 * 14 13 12 16 16 C 1.37875 * 119.99640 * 324.25464 * 14 13 12 17 17 N 1.31515 * 120.00026 * 3.22657 * 16 14 13 18 18 Si 1.86804 * 119.99782 * 183.22925 * 16 14 13 19 19 H 1.48496 * 109.46927 * 0.02562 * 18 16 14 20 20 H 1.48494 * 109.46984 * 119.99879 * 18 16 14 21 21 H 1.48496 * 109.46644 * 239.99696 * 18 16 14 22 22 C 1.53001 * 117.50036 * 159.92435 * 13 12 11 23 23 C 1.53003 * 117.49963 * 91.26569 * 13 12 11 24 24 H 1.09004 * 109.47344 * 262.80090 * 1 2 3 25 25 H 1.09002 * 109.47282 * 22.79534 * 1 2 3 26 26 H 1.08997 * 109.47389 * 142.79225 * 1 2 3 27 27 H 1.08007 * 119.93272 * 359.97438 * 3 2 1 28 28 H 1.08003 * 119.93463 * 179.97438 * 6 4 3 29 29 H 1.07997 * 120.06720 * 179.97438 * 7 6 4 30 30 H 0.97003 * 119.99838 * 4.76252 * 11 9 8 31 31 H 1.09001 * 109.47201 * 295.00569 * 12 11 9 32 32 H 1.09001 * 109.47149 * 55.00295 * 12 11 9 33 33 H 0.97006 * 119.99561 * 185.00652 * 17 16 14 34 34 H 1.09000 * 117.49558 * 0.02562 * 22 13 12 35 35 H 1.09000 * 117.49680 * 145.01970 * 22 13 12 36 36 H 1.08998 * 117.49894 * 214.98345 * 23 13 12 37 37 H 1.09004 * 117.49873 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1935 0.0000 4 6 3.5829 1.1951 -0.0057 5 17 4.4458 2.7015 -0.0131 6 6 4.2824 -0.0007 -0.0062 7 6 3.6026 -1.2002 -0.0014 8 6 2.2063 -1.2081 0.0050 9 6 1.4717 -2.4905 0.0098 10 8 0.2629 -2.4980 0.1376 11 7 2.1427 -3.6519 -0.1222 12 6 1.4076 -4.9152 -0.2223 13 6 2.3903 -6.0574 -0.4879 14 6 3.2931 -5.8740 -1.6806 15 1 4.3102 -6.2357 -1.6487 16 6 2.8205 -5.2445 -2.8126 17 7 1.6029 -4.7478 -2.8288 18 14 3.9097 -5.0972 -4.3230 19 1 5.2235 -5.7331 -4.0498 20 1 3.2594 -5.7792 -5.4706 21 1 4.1117 -3.6627 -4.6495 22 6 1.9250 -7.4789 -0.1660 23 6 2.9633 -6.7928 0.7253 24 1 -0.3634 -0.1288 1.0196 25 1 -0.3634 0.9474 -0.3982 26 1 -0.3634 -0.8184 -0.6214 27 1 1.6580 2.1289 -0.0004 28 1 5.3624 0.0067 -0.0111 29 1 4.1490 -2.1318 -0.0021 30 1 3.1123 -3.6513 -0.1508 31 1 0.8773 -5.1020 0.7114 32 1 0.6910 -4.8546 -1.0414 33 1 1.2442 -4.3699 -3.6471 34 1 0.9186 -7.6004 0.2346 35 1 2.2721 -8.2816 -0.8167 36 1 3.9930 -7.1443 0.6606 37 1 2.6405 -6.4626 1.7127 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404138475.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:27 Heat of formation + Delta-G solvation = 3.101261 kcal Electronic energy + Delta-G solvation = -21110.652597 eV Core-core repulsion = 17879.362614 eV Total energy + Delta-G solvation = -3231.289983 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.96217 -38.09500 -36.77368 -36.34557 -33.53718 -32.34722 -32.13687 -30.81712 -27.21187 -25.95838 -25.29500 -23.26711 -21.52263 -21.28117 -19.74927 -19.28161 -17.49195 -16.36670 -16.10634 -15.55582 -14.92792 -14.71426 -14.48771 -14.41802 -13.77539 -13.44697 -13.15605 -13.05065 -12.62163 -12.53005 -12.05986 -11.98319 -11.79407 -11.48720 -11.37188 -11.18741 -11.13804 -10.83879 -10.74173 -10.55847 -10.29725 -9.74223 -9.10741 -8.91197 -8.89418 -8.82942 -8.62565 -8.33882 -7.86493 -6.06511 -4.25197 0.87361 1.31231 2.02948 3.17571 3.22164 3.28582 3.30061 3.95162 4.18815 4.26675 4.75213 4.83154 4.89857 5.18810 5.24595 5.40202 5.47439 5.53136 5.87091 5.88540 5.97798 6.04495 6.16836 6.22033 6.26128 6.37259 6.48722 6.56971 6.66193 6.68028 6.81594 6.87013 7.05836 7.21389 7.50890 7.59212 7.91413 8.25106 8.49644 8.77125 9.08804 9.38942 10.84063 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.016027 B = 0.004860 C = 0.004343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.590959 B = 5759.519946 C = 6446.008505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.017 4.017 3 C -0.126 4.126 4 C -0.016 4.016 5 Cl -0.077 7.077 6 C -0.127 4.127 7 C -0.070 4.070 8 C -0.117 4.117 9 C 0.547 3.453 10 O -0.551 6.551 11 N -0.673 5.673 12 C 0.164 3.836 13 C 0.034 3.966 14 C -0.496 4.496 15 H 0.061 0.939 16 C 0.075 3.925 17 N -0.867 5.867 18 Si 0.890 3.110 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.283 1.283 22 C -0.197 4.197 23 C -0.213 4.213 24 H 0.076 0.924 25 H 0.053 0.947 26 H 0.102 0.898 27 H 0.135 0.865 28 H 0.136 0.864 29 H 0.140 0.860 30 H 0.396 0.604 31 H 0.021 0.979 32 H 0.118 0.882 33 H 0.262 0.738 34 H 0.067 0.933 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.098 10.400 5.325 12.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.018 4.018 3 C -0.145 4.145 4 C -0.043 4.043 5 Cl -0.048 7.048 6 C -0.146 4.146 7 C -0.089 4.089 8 C -0.121 4.121 9 C 0.333 3.667 10 O -0.432 6.432 11 N -0.319 5.319 12 C 0.042 3.958 13 C 0.034 3.966 14 C -0.533 4.533 15 H 0.080 0.920 16 C -0.129 4.129 17 N -0.503 5.503 18 Si 0.718 3.282 19 H -0.197 1.197 20 H -0.208 1.208 21 H -0.209 1.209 22 C -0.236 4.236 23 C -0.250 4.250 24 H 0.094 0.906 25 H 0.072 0.928 26 H 0.121 0.879 27 H 0.153 0.847 28 H 0.154 0.846 29 H 0.157 0.843 30 H 0.231 0.769 31 H 0.039 0.961 32 H 0.136 0.864 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.211 10.636 5.278 12.077 hybrid contribution 1.296 0.080 -0.939 1.603 sum 3.507 10.716 4.339 12.081 Atomic orbital electron populations 1.21063 0.89371 1.02970 1.03907 1.19995 0.97226 0.90700 0.93902 1.20878 0.91747 0.98545 1.03293 1.21063 0.92443 0.86861 1.03928 1.98358 1.77117 1.32428 1.96883 1.20931 1.00519 0.90443 1.02689 1.21389 0.93313 0.98189 0.95979 1.20249 0.93599 0.94497 1.03720 1.17919 0.87057 0.83500 0.78181 1.90650 1.13802 1.87133 1.51643 1.45582 1.10315 1.06161 1.69887 1.21146 0.94785 0.80474 0.99422 1.19255 0.96104 0.88536 0.92749 1.20542 0.97663 1.37774 0.97362 0.92035 1.24983 0.95307 0.93951 0.98659 1.69862 1.15256 1.38222 1.27005 0.86556 0.80761 0.77880 0.83019 1.19706 1.20824 1.20872 1.22934 0.96704 0.99935 1.04026 1.22966 0.97637 1.09186 0.95197 0.90588 0.92787 0.87942 0.84737 0.84645 0.84266 0.76924 0.96118 0.86427 0.92698 0.91433 0.90192 0.90603 0.91321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.74 8.68 36.00 0.31 -1.43 16 2 C -0.02 -0.26 5.91 -104.24 -0.62 -0.88 16 3 C -0.13 -1.67 9.44 -39.61 -0.37 -2.05 16 4 C -0.02 -0.21 6.33 -39.38 -0.25 -0.46 16 5 Cl -0.08 -0.87 28.95 -51.86 -1.50 -2.37 16 6 C -0.13 -1.66 9.81 -39.61 -0.39 -2.05 16 7 C -0.07 -1.03 9.53 -39.19 -0.37 -1.40 16 8 C -0.12 -2.01 5.87 -104.96 -0.62 -2.62 16 9 C 0.55 11.15 7.69 -12.36 -0.09 11.05 16 10 O -0.55 -12.41 13.39 5.31 0.07 -12.34 16 11 N -0.67 -13.95 5.06 -61.27 -0.31 -14.26 16 12 C 0.16 3.75 4.61 -4.04 -0.02 3.73 16 13 C 0.03 0.78 2.02 -155.66 -0.32 0.46 16 14 C -0.50 -12.18 8.44 -34.44 -0.29 -12.47 16 15 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 16 C 0.08 1.88 5.32 -17.82 -0.09 1.78 16 17 N -0.87 -22.49 10.20 55.43 0.57 -21.93 16 18 Si 0.89 19.75 29.54 -169.99 -5.02 14.72 16 19 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 22 C -0.20 -4.18 9.96 -26.69 -0.27 -4.44 16 23 C -0.21 -4.26 9.92 -26.69 -0.26 -4.53 16 24 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 25 H 0.05 0.65 8.03 -51.93 -0.42 0.23 16 26 H 0.10 1.82 5.94 -51.93 -0.31 1.51 16 27 H 0.13 1.49 8.05 -52.48 -0.42 1.06 16 28 H 0.14 1.46 8.06 -52.48 -0.42 1.04 16 29 H 0.14 1.91 6.43 -52.49 -0.34 1.57 16 30 H 0.40 7.69 6.18 -40.82 -0.25 7.44 16 31 H 0.02 0.46 8.09 -51.93 -0.42 0.04 16 32 H 0.12 3.07 5.91 -51.93 -0.31 2.77 16 33 H 0.26 6.70 8.32 -40.82 -0.34 6.36 16 34 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 36 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 37 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 325.54 15.07 4.91 4.91 Total: -1.00 -26.61 325.54 -9.49 -36.09 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -4.55 Total: 10.47 kcal Atomic # 6 Polarization: -11.64 SS G_CDS: -3.65 Total: -15.29 kcal Atomic # 7 Polarization: -36.45 SS G_CDS: 0.26 Total: -36.19 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: 0.07 Total: -12.34 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.72 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -1.50 Total: -2.37 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -26.61 -9.49 -36.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404138475.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.196 kcal (2) G-P(sol) polarization free energy of solvation -26.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds