Wall clock time and date at job start Tue Mar 31 2020 06:51:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37913 * 120.07044 * 2 1 4 4 C 1.38495 * 120.13443 * 180.27454 * 3 2 1 5 5 Cl 1.73603 * 119.86855 * 179.71822 * 4 3 2 6 6 C 1.38529 * 120.26065 * 359.74340 * 4 3 2 7 7 C 1.37877 * 120.13616 * 0.02562 * 6 4 3 8 8 C 1.39592 * 120.06415 * 179.76223 * 2 1 3 9 9 C 1.47786 * 120.13177 * 0.02562 * 8 2 1 10 10 O 1.21562 * 119.99870 * 352.99886 * 9 8 2 11 11 N 1.34778 * 120.00019 * 173.27011 * 9 8 2 12 12 C 1.46499 * 120.00088 * 184.75981 * 11 9 8 13 13 C 1.52997 * 109.47289 * 175.00517 * 12 11 9 14 14 C 1.50706 * 115.55015 * 305.60054 * 13 12 11 15 15 H 1.07992 * 120.00153 * 144.25731 * 14 13 12 16 16 C 1.37875 * 119.99640 * 324.25464 * 14 13 12 17 17 N 1.31515 * 120.00026 * 3.22657 * 16 14 13 18 18 Si 1.86804 * 119.99782 * 183.22925 * 16 14 13 19 19 H 1.48496 * 109.46927 * 0.02562 * 18 16 14 20 20 H 1.48494 * 109.46984 * 119.99879 * 18 16 14 21 21 H 1.48496 * 109.46644 * 239.99696 * 18 16 14 22 22 C 1.53001 * 117.50036 * 159.92435 * 13 12 11 23 23 C 1.53003 * 117.49963 * 91.26569 * 13 12 11 24 24 H 1.09004 * 109.47344 * 262.80090 * 1 2 3 25 25 H 1.09002 * 109.47282 * 22.79534 * 1 2 3 26 26 H 1.08997 * 109.47389 * 142.79225 * 1 2 3 27 27 H 1.08007 * 119.93272 * 359.97438 * 3 2 1 28 28 H 1.08003 * 119.93463 * 179.97438 * 6 4 3 29 29 H 1.07997 * 120.06720 * 179.97438 * 7 6 4 30 30 H 0.97003 * 119.99838 * 4.76252 * 11 9 8 31 31 H 1.09001 * 109.47201 * 295.00569 * 12 11 9 32 32 H 1.09001 * 109.47149 * 55.00295 * 12 11 9 33 33 H 0.97006 * 119.99561 * 185.00652 * 17 16 14 34 34 H 1.09000 * 117.49558 * 0.02562 * 22 13 12 35 35 H 1.09000 * 117.49680 * 145.01970 * 22 13 12 36 36 H 1.08998 * 117.49894 * 214.98345 * 23 13 12 37 37 H 1.09004 * 117.49873 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1935 0.0000 4 6 3.5829 1.1951 -0.0057 5 17 4.4458 2.7015 -0.0131 6 6 4.2824 -0.0007 -0.0062 7 6 3.6026 -1.2002 -0.0014 8 6 2.2063 -1.2081 0.0050 9 6 1.4717 -2.4905 0.0098 10 8 0.2629 -2.4980 0.1376 11 7 2.1427 -3.6519 -0.1222 12 6 1.4076 -4.9152 -0.2223 13 6 2.3903 -6.0574 -0.4879 14 6 3.2931 -5.8740 -1.6806 15 1 4.3102 -6.2357 -1.6487 16 6 2.8205 -5.2445 -2.8126 17 7 1.6029 -4.7478 -2.8288 18 14 3.9097 -5.0972 -4.3230 19 1 5.2235 -5.7331 -4.0498 20 1 3.2594 -5.7792 -5.4706 21 1 4.1117 -3.6627 -4.6495 22 6 1.9250 -7.4789 -0.1660 23 6 2.9633 -6.7928 0.7253 24 1 -0.3634 -0.1288 1.0196 25 1 -0.3634 0.9474 -0.3982 26 1 -0.3634 -0.8184 -0.6214 27 1 1.6580 2.1289 -0.0004 28 1 5.3624 0.0067 -0.0111 29 1 4.1490 -2.1318 -0.0021 30 1 3.1123 -3.6513 -0.1508 31 1 0.8773 -5.1020 0.7114 32 1 0.6910 -4.8546 -1.0414 33 1 1.2442 -4.3699 -3.6471 34 1 0.9186 -7.6004 0.2346 35 1 2.2721 -8.2816 -0.8167 36 1 3.9930 -7.1443 0.6606 37 1 2.6405 -6.4626 1.7127 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404138475.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:26 Heat of formation + Delta-G solvation = -9.522580 kcal Electronic energy + Delta-G solvation = -21111.200008 eV Core-core repulsion = 17879.362614 eV Total energy + Delta-G solvation = -3231.837394 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.29265 -39.51023 -38.37659 -37.44017 -35.07748 -34.15241 -33.45990 -32.03256 -28.49761 -27.68410 -26.99718 -24.51974 -22.97600 -22.65839 -21.26808 -21.02736 -18.97218 -17.95529 -17.31330 -16.91072 -16.75271 -16.17729 -15.94051 -15.84320 -15.29292 -14.89579 -14.54232 -14.21349 -14.13390 -13.73912 -13.53543 -13.35437 -13.24943 -13.14669 -12.94170 -12.56172 -12.43912 -12.28499 -12.25826 -12.02220 -11.84773 -11.50583 -10.88777 -10.69375 -10.49558 -10.14040 -9.95513 -9.86017 -9.48899 -7.95366 -6.19301 -0.31115 0.22113 1.01416 1.40216 1.46750 1.54500 1.90177 2.40648 2.48525 2.79672 3.08640 3.64005 3.68079 3.77328 3.91688 4.11791 4.27186 4.29344 4.43982 4.55070 4.72467 4.75879 4.81154 4.83011 4.84722 4.97562 5.06678 5.10138 5.15135 5.21433 5.31482 5.52843 5.54624 5.61526 5.68551 5.89954 5.99933 6.38017 6.78813 6.96649 7.46105 7.50701 8.92157 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.016027 B = 0.004860 C = 0.004343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.590959 B = 5759.519946 C = 6446.008505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.028 4.028 3 C -0.120 4.120 4 C -0.013 4.013 5 Cl -0.056 7.056 6 C -0.122 4.122 7 C -0.072 4.072 8 C -0.145 4.145 9 C 0.542 3.458 10 O -0.582 6.582 11 N -0.673 5.673 12 C 0.177 3.823 13 C 0.006 3.994 14 C -0.500 4.500 15 H 0.059 0.941 16 C 0.038 3.962 17 N -0.890 5.890 18 Si 0.943 3.057 19 H -0.265 1.265 20 H -0.288 1.288 21 H -0.285 1.285 22 C -0.199 4.199 23 C -0.186 4.186 24 H 0.074 0.926 25 H 0.083 0.917 26 H 0.067 0.933 27 H 0.161 0.839 28 H 0.162 0.838 29 H 0.145 0.855 30 H 0.401 0.599 31 H 0.018 0.982 32 H 0.082 0.918 33 H 0.256 0.744 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.965 11.836 5.773 14.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.029 4.029 3 C -0.138 4.138 4 C -0.040 4.040 5 Cl -0.026 7.026 6 C -0.140 4.140 7 C -0.091 4.091 8 C -0.148 4.148 9 C 0.330 3.670 10 O -0.465 6.465 11 N -0.320 5.320 12 C 0.053 3.947 13 C 0.006 3.994 14 C -0.537 4.537 15 H 0.077 0.923 16 C -0.164 4.164 17 N -0.527 5.527 18 Si 0.770 3.230 19 H -0.189 1.189 20 H -0.215 1.215 21 H -0.211 1.211 22 C -0.238 4.238 23 C -0.223 4.223 24 H 0.093 0.907 25 H 0.102 0.898 26 H 0.086 0.914 27 H 0.178 0.822 28 H 0.180 0.820 29 H 0.163 0.837 30 H 0.237 0.763 31 H 0.036 0.964 32 H 0.100 0.900 33 H 0.066 0.934 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.103 0.897 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 4.107 12.069 5.735 13.979 hybrid contribution 0.744 -0.305 -1.044 1.317 sum 4.851 11.765 4.691 13.563 Atomic orbital electron populations 1.20954 0.89447 1.03105 1.03266 1.20120 0.97436 0.91034 0.94341 1.21077 0.92087 0.98558 1.02088 1.21217 0.92596 0.87772 1.02461 1.98373 1.76598 1.31007 1.96663 1.21193 1.01799 0.89675 1.01374 1.21475 0.92367 0.99398 0.95848 1.20102 0.94600 0.93251 1.06852 1.18490 0.86951 0.84493 0.77077 1.90629 1.15236 1.87753 1.52909 1.45500 1.10445 1.05814 1.70221 1.20787 0.94463 0.81732 0.97720 1.19293 0.96974 0.89200 0.93956 1.20715 0.97690 1.37283 0.98031 0.92278 1.25536 0.96089 0.93994 1.00740 1.70049 1.16533 1.39211 1.26931 0.85728 0.79611 0.77429 0.80209 1.18938 1.21462 1.21102 1.22957 0.97696 0.98761 1.04370 1.22957 0.97774 1.06755 0.94842 0.90732 0.89813 0.91430 0.82192 0.82030 0.83696 0.76299 0.96406 0.90022 0.93442 0.90640 0.90430 0.89674 0.89744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.32 8.68 71.23 0.62 -2.70 16 2 C -0.03 -0.84 5.91 -19.62 -0.12 -0.96 16 3 C -0.12 -2.89 9.44 22.25 0.21 -2.68 16 4 C -0.01 -0.31 6.33 22.40 0.14 -0.17 16 5 Cl -0.06 -1.08 28.95 -2.72 -0.08 -1.16 16 6 C -0.12 -2.86 9.81 22.25 0.22 -2.65 16 7 C -0.07 -2.05 9.53 22.52 0.21 -1.83 16 8 C -0.14 -4.96 5.87 -20.09 -0.12 -5.08 16 9 C 0.54 22.78 7.69 86.77 0.67 23.44 16 10 O -0.58 -27.49 13.39 -3.91 -0.05 -27.55 16 11 N -0.67 -28.54 5.06 -466.03 -2.36 -30.90 16 12 C 0.18 8.28 4.61 86.38 0.40 8.68 16 13 C 0.01 0.29 2.02 -52.93 -0.11 0.18 16 14 C -0.50 -24.42 8.44 25.60 0.22 -24.21 16 15 H 0.06 2.87 7.81 -2.91 -0.02 2.84 16 16 C 0.04 1.90 5.32 84.65 0.45 2.35 16 17 N -0.89 -47.36 10.20 21.45 0.22 -47.14 16 18 Si 0.94 40.56 29.54 68.60 2.03 42.59 16 19 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 20 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 21 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 22 C -0.20 -8.30 9.96 30.62 0.30 -8.00 16 23 C -0.19 -7.16 9.92 30.62 0.30 -6.86 16 24 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 25 H 0.08 1.91 8.03 -2.39 -0.02 1.89 16 26 H 0.07 2.52 5.94 -2.39 -0.01 2.50 16 27 H 0.16 2.98 8.05 -2.91 -0.02 2.96 16 28 H 0.16 2.91 8.06 -2.91 -0.02 2.88 16 29 H 0.15 3.84 6.43 -2.91 -0.02 3.82 16 30 H 0.40 15.75 6.18 -92.71 -0.57 15.17 16 31 H 0.02 0.82 8.09 -2.39 -0.02 0.80 16 32 H 0.08 4.47 5.91 -2.39 -0.01 4.45 16 33 H 0.26 13.47 8.32 -92.70 -0.77 12.70 16 34 H 0.08 2.99 8.14 -2.39 -0.02 2.97 16 35 H 0.08 3.23 8.14 -2.39 -0.02 3.22 16 36 H 0.08 3.12 8.14 -2.39 -0.02 3.10 16 37 H 0.08 2.98 8.14 -2.38 -0.02 2.96 16 Total: -1.00 -57.59 325.54 3.68 -53.91 By element: Atomic # 1 Polarization: 30.20 SS G_CDS: 0.52 Total: 30.72 kcal Atomic # 6 Polarization: -23.87 SS G_CDS: 3.40 Total: -20.47 kcal Atomic # 7 Polarization: -75.90 SS G_CDS: -2.14 Total: -78.04 kcal Atomic # 8 Polarization: -27.49 SS G_CDS: -0.05 Total: -27.55 kcal Atomic # 14 Polarization: 40.56 SS G_CDS: 2.03 Total: 42.59 kcal Atomic # 17 Polarization: -1.08 SS G_CDS: -0.08 Total: -1.16 kcal Total: -57.59 3.68 -53.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404138475.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.388 kcal (2) G-P(sol) polarization free energy of solvation -57.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds