Wall clock time and date at job start Tue Mar 31 2020 06:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86793 * 120.00116 * 2 1 4 4 H 1.48501 * 109.47295 * 269.99648 * 3 2 1 5 5 H 1.48501 * 109.47207 * 30.00089 * 3 2 1 6 6 H 1.48502 * 109.47356 * 149.99858 * 3 2 1 7 7 C 1.37885 * 120.00010 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00163 * 175.50930 * 7 2 1 9 9 C 1.50706 * 119.99641 * 355.78491 * 7 2 1 10 10 C 1.52994 * 115.55116 * 35.31593 * 9 7 2 11 11 N 1.46500 * 109.47213 * 54.24093 * 10 9 7 12 12 C 1.34771 * 120.00108 * 184.99485 * 11 10 9 13 13 O 1.21556 * 120.00353 * 5.07397 * 12 11 10 14 14 C 1.47848 * 120.00142 * 185.07378 * 12 11 10 15 15 C 1.39596 * 120.14071 * 4.87242 * 14 12 11 16 16 C 1.37944 * 119.85073 * 179.79368 * 15 14 12 17 17 C 1.38380 * 120.14498 * 0.48220 * 16 15 14 18 18 C 1.38340 * 120.29186 * 359.74424 * 17 16 15 19 19 C 1.50697 * 119.92673 * 180.02562 * 18 17 16 20 20 Cl 1.80306 * 109.47009 * 270.02170 * 19 18 17 21 21 C 1.37978 * 120.14580 * 0.02562 * 18 17 16 22 22 C 1.53001 * 117.49397 * 249.64894 * 9 7 2 23 23 C 1.53001 * 117.49653 * 180.99185 * 9 7 2 24 24 H 0.96994 * 119.99862 * 5.00186 * 1 2 3 25 25 H 1.09004 * 109.46939 * 174.23758 * 10 9 7 26 26 H 1.08998 * 109.47630 * 294.23933 * 10 9 7 27 27 H 0.97001 * 119.99697 * 4.99494 * 11 10 9 28 28 H 1.08002 * 120.07511 * 359.97438 * 15 14 12 29 29 H 1.08000 * 119.92495 * 180.23179 * 16 15 14 30 30 H 1.08000 * 119.85349 * 179.77290 * 17 16 15 31 31 H 1.09002 * 109.47301 * 30.01977 * 19 18 17 32 32 H 1.09001 * 109.47274 * 150.02624 * 19 18 17 33 33 H 1.08001 * 120.07311 * 179.97438 * 21 18 17 34 34 H 1.08999 * 117.50294 * 0.02562 * 22 9 7 35 35 H 1.09004 * 117.49672 * 145.02205 * 22 9 7 36 36 H 1.09003 * 117.49557 * 214.97961 * 23 9 7 37 37 H 1.08996 * 117.49777 * 359.97200 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0821 -1.1956 -0.0727 9 6 1.2541 -2.4974 0.0971 10 6 -0.0994 -2.5338 -0.6153 11 7 0.0749 -2.1393 -2.0154 12 6 -1.0009 -2.0008 -2.8154 13 8 -2.1199 -2.1125 -2.3540 14 6 -0.8199 -1.7130 -4.2543 15 6 0.4613 -1.6846 -4.8077 16 6 0.6229 -1.4197 -6.1518 17 6 -0.4808 -1.1724 -6.9490 18 6 -1.7529 -1.1944 -6.4058 19 6 -2.9492 -0.9245 -7.2816 20 17 -3.3060 0.8429 -7.2838 21 6 -1.9288 -1.4627 -5.0638 22 6 1.3915 -3.2973 1.3941 23 6 2.0773 -3.7869 0.1162 24 1 -0.4850 0.8368 -0.0732 25 1 -0.5066 -3.5439 -0.5704 26 1 -0.7863 -1.8431 -0.1261 27 1 0.9645 -1.9779 -2.3666 28 1 1.3239 -1.8727 -4.1856 29 1 1.6134 -1.4012 -6.5820 30 1 -0.3486 -0.9619 -8.0000 31 1 -2.7364 -1.2534 -8.2988 32 1 -3.8116 -1.4687 -6.8966 33 1 -2.9224 -1.4791 -4.6409 34 1 2.0243 -2.8807 2.1777 35 1 0.5177 -3.8498 1.7396 36 1 1.6544 -4.6613 -0.3786 37 1 3.1616 -3.6926 0.0585 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404159404.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:00 Heat of formation + Delta-G solvation = -2.097985 kcal Electronic energy + Delta-G solvation = -20800.968125 eV Core-core repulsion = 17569.452686 eV Total energy + Delta-G solvation = -3231.515439 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.77530 -38.10162 -36.62242 -36.02961 -33.32084 -32.37783 -32.08159 -30.97723 -26.94397 -26.08348 -25.40032 -23.03889 -21.76691 -21.27553 -19.41771 -19.25655 -17.48396 -16.29302 -15.89546 -15.48719 -14.87287 -14.74815 -14.59965 -14.39525 -14.09777 -13.65018 -13.53533 -13.27722 -12.99665 -12.48443 -12.24142 -11.80011 -11.67770 -11.44791 -11.25591 -11.08648 -10.74936 -10.56749 -10.53578 -10.51343 -10.26888 -9.76654 -9.17430 -8.96834 -8.87962 -8.87232 -8.82122 -8.31577 -7.85335 -6.00663 -4.21723 0.94061 1.24633 2.32460 3.20472 3.30650 3.31920 3.40407 3.99721 4.25043 4.29387 4.42170 4.63159 4.90236 4.99518 5.00921 5.15741 5.32235 5.40992 5.46202 5.62012 5.85794 5.98166 5.99896 6.27306 6.39595 6.40586 6.48209 6.51082 6.58066 6.68019 6.86570 6.89037 7.07647 7.23002 7.55090 7.62710 7.95667 8.28155 8.53737 8.80179 9.14191 9.42327 10.88066 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.017285 B = 0.004385 C = 0.004020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.491696 B = 6383.231290 C = 6963.500872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.075 3.925 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.500 4.500 8 H 0.061 0.939 9 C 0.036 3.964 10 C 0.163 3.837 11 N -0.673 5.673 12 C 0.545 3.455 13 O -0.556 6.556 14 C -0.116 4.116 15 C -0.077 4.077 16 C -0.128 4.128 17 C -0.086 4.086 18 C -0.123 4.123 19 C 0.013 3.987 20 Cl -0.180 7.180 21 C -0.045 4.045 22 C -0.198 4.198 23 C -0.213 4.213 24 H 0.264 0.736 25 H 0.019 0.981 26 H 0.119 0.881 27 H 0.397 0.603 28 H 0.132 0.868 29 H 0.129 0.871 30 H 0.124 0.876 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.136 0.864 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.419 -3.072 -14.632 15.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.130 4.130 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.537 4.537 8 H 0.079 0.921 9 C 0.035 3.965 10 C 0.040 3.960 11 N -0.319 5.319 12 C 0.330 3.670 13 O -0.436 6.436 14 C -0.119 4.119 15 C -0.096 4.096 16 C -0.146 4.146 17 C -0.105 4.105 18 C -0.124 4.124 19 C -0.049 4.049 20 Cl -0.153 7.153 21 C -0.064 4.064 22 C -0.237 4.237 23 C -0.250 4.250 24 H 0.074 0.926 25 H 0.037 0.963 26 H 0.137 0.863 27 H 0.232 0.768 28 H 0.150 0.850 29 H 0.147 0.853 30 H 0.142 0.858 31 H 0.119 0.881 32 H 0.121 0.879 33 H 0.154 0.846 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.396 -2.901 -14.188 14.679 hybrid contribution 1.049 1.053 -0.074 1.488 sum -1.348 -1.848 -14.262 14.444 Atomic orbital electron populations 1.69844 1.05666 1.26839 1.47663 1.25006 0.94842 0.99090 0.94057 0.86578 0.79862 0.83339 0.78234 1.20581 1.21064 1.19823 1.20487 0.92709 0.88520 1.51995 0.92108 1.19238 0.92831 0.89933 0.94490 1.21119 0.98328 0.96681 0.79822 1.45544 1.08227 1.66317 1.11794 1.18022 0.85332 0.78357 0.85266 1.90697 1.24245 1.52656 1.76049 1.20278 0.93761 1.02993 0.94870 1.21536 0.96693 0.95983 0.95393 1.21063 0.98863 1.01026 0.93686 1.21113 0.91775 0.97724 0.99856 1.19604 0.94251 1.04181 0.94346 1.23132 0.97984 0.82284 1.01502 1.98743 1.95763 1.21558 1.99273 1.21133 0.99406 0.94146 0.91742 1.22940 1.01693 1.06555 0.92507 1.22960 0.98428 0.99998 1.03611 0.92568 0.96298 0.86340 0.76848 0.84985 0.85331 0.85785 0.88093 0.87929 0.84607 0.90198 0.91448 0.91354 0.90611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.14 10.11 55.43 0.56 -22.58 16 2 C 0.07 1.91 5.31 -17.82 -0.09 1.82 16 3 Si 0.89 20.19 29.54 -169.99 -5.02 15.16 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.50 -12.52 8.44 -34.43 -0.29 -12.81 16 8 H 0.06 1.52 7.82 -52.49 -0.41 1.11 16 9 C 0.04 0.83 2.04 -155.66 -0.32 0.51 16 10 C 0.16 3.83 4.62 -4.05 -0.02 3.81 16 11 N -0.67 -14.35 4.96 -61.25 -0.30 -14.65 16 12 C 0.54 11.54 7.76 -12.33 -0.10 11.45 16 13 O -0.56 -13.56 16.34 5.32 0.09 -13.47 16 14 C -0.12 -1.98 5.87 -104.97 -0.62 -2.60 16 15 C -0.08 -1.11 9.52 -39.18 -0.37 -1.48 16 16 C -0.13 -1.50 10.03 -39.64 -0.40 -1.90 16 17 C -0.09 -0.94 9.69 -39.49 -0.38 -1.33 16 18 C -0.12 -1.49 5.25 -104.68 -0.55 -2.04 16 19 C 0.01 0.13 6.78 36.00 0.24 0.37 16 20 Cl -0.18 -2.11 29.13 -51.86 -1.51 -3.62 16 21 C -0.05 -0.68 9.24 -39.18 -0.36 -1.05 16 22 C -0.20 -4.27 9.96 -26.69 -0.27 -4.53 16 23 C -0.21 -4.31 9.92 -26.69 -0.26 -4.58 16 24 H 0.26 6.99 8.32 -40.82 -0.34 6.65 16 25 H 0.02 0.43 8.09 -51.93 -0.42 0.01 16 26 H 0.12 3.21 5.89 -51.93 -0.31 2.90 16 27 H 0.40 7.90 6.21 -40.82 -0.25 7.65 16 28 H 0.13 1.79 6.47 -52.49 -0.34 1.45 16 29 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 30 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 31 H 0.10 0.69 8.08 -51.93 -0.42 0.27 16 32 H 0.10 0.85 8.08 -51.93 -0.42 0.43 16 33 H 0.14 2.13 7.66 -52.49 -0.40 1.73 16 34 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 35 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 36 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 37 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 LS Contribution 331.15 15.07 4.99 4.99 Total: -1.00 -28.98 331.15 -9.63 -38.61 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -4.64 Total: 9.90 kcal Atomic # 6 Polarization: -10.56 SS G_CDS: -3.79 Total: -14.35 kcal Atomic # 7 Polarization: -37.48 SS G_CDS: 0.26 Total: -37.23 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: 0.09 Total: -13.47 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.16 kcal Atomic # 17 Polarization: -2.11 SS G_CDS: -1.51 Total: -3.62 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -28.98 -9.63 -38.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404159404.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.507 kcal (2) G-P(sol) polarization free energy of solvation -28.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds