Wall clock time and date at job start Tue Mar 31 2020 06:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86793 * 120.00116 * 2 1 4 4 H 1.48501 * 109.47295 * 269.99648 * 3 2 1 5 5 H 1.48501 * 109.47207 * 30.00089 * 3 2 1 6 6 H 1.48502 * 109.47356 * 149.99858 * 3 2 1 7 7 C 1.37885 * 120.00010 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00163 * 175.50930 * 7 2 1 9 9 C 1.50706 * 119.99641 * 355.78491 * 7 2 1 10 10 C 1.52994 * 115.55116 * 35.31593 * 9 7 2 11 11 N 1.46500 * 109.47213 * 54.24093 * 10 9 7 12 12 C 1.34771 * 120.00108 * 184.99485 * 11 10 9 13 13 O 1.21556 * 120.00353 * 5.07397 * 12 11 10 14 14 C 1.47848 * 120.00142 * 185.07378 * 12 11 10 15 15 C 1.39596 * 120.14071 * 4.87242 * 14 12 11 16 16 C 1.37944 * 119.85073 * 179.79368 * 15 14 12 17 17 C 1.38380 * 120.14498 * 0.48220 * 16 15 14 18 18 C 1.38340 * 120.29186 * 359.74424 * 17 16 15 19 19 C 1.50697 * 119.92673 * 180.02562 * 18 17 16 20 20 Cl 1.80306 * 109.47009 * 270.02170 * 19 18 17 21 21 C 1.37978 * 120.14580 * 0.02562 * 18 17 16 22 22 C 1.53001 * 117.49397 * 249.64894 * 9 7 2 23 23 C 1.53001 * 117.49653 * 180.99185 * 9 7 2 24 24 H 0.96994 * 119.99862 * 5.00186 * 1 2 3 25 25 H 1.09004 * 109.46939 * 174.23758 * 10 9 7 26 26 H 1.08998 * 109.47630 * 294.23933 * 10 9 7 27 27 H 0.97001 * 119.99697 * 4.99494 * 11 10 9 28 28 H 1.08002 * 120.07511 * 359.97438 * 15 14 12 29 29 H 1.08000 * 119.92495 * 180.23179 * 16 15 14 30 30 H 1.08000 * 119.85349 * 179.77290 * 17 16 15 31 31 H 1.09002 * 109.47301 * 30.01977 * 19 18 17 32 32 H 1.09001 * 109.47274 * 150.02624 * 19 18 17 33 33 H 1.08001 * 120.07311 * 179.97438 * 21 18 17 34 34 H 1.08999 * 117.50294 * 0.02562 * 22 9 7 35 35 H 1.09004 * 117.49672 * 145.02205 * 22 9 7 36 36 H 1.09003 * 117.49557 * 214.97961 * 23 9 7 37 37 H 1.08996 * 117.49777 * 359.97200 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0821 -1.1956 -0.0727 9 6 1.2541 -2.4974 0.0971 10 6 -0.0994 -2.5338 -0.6153 11 7 0.0749 -2.1393 -2.0154 12 6 -1.0009 -2.0008 -2.8154 13 8 -2.1199 -2.1125 -2.3540 14 6 -0.8199 -1.7130 -4.2543 15 6 0.4613 -1.6846 -4.8077 16 6 0.6229 -1.4197 -6.1518 17 6 -0.4808 -1.1724 -6.9490 18 6 -1.7529 -1.1944 -6.4058 19 6 -2.9492 -0.9245 -7.2816 20 17 -3.3060 0.8429 -7.2838 21 6 -1.9288 -1.4627 -5.0638 22 6 1.3915 -3.2973 1.3941 23 6 2.0773 -3.7869 0.1162 24 1 -0.4850 0.8368 -0.0732 25 1 -0.5066 -3.5439 -0.5704 26 1 -0.7863 -1.8431 -0.1261 27 1 0.9645 -1.9779 -2.3666 28 1 1.3239 -1.8727 -4.1856 29 1 1.6134 -1.4012 -6.5820 30 1 -0.3486 -0.9619 -8.0000 31 1 -2.7364 -1.2534 -8.2988 32 1 -3.8116 -1.4687 -6.8966 33 1 -2.9224 -1.4791 -4.6409 34 1 2.0243 -2.8807 2.1777 35 1 0.5177 -3.8498 1.7396 36 1 1.6544 -4.6613 -0.3786 37 1 3.1616 -3.6926 0.0585 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404159404.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:59 Heat of formation + Delta-G solvation = -17.441956 kcal Electronic energy + Delta-G solvation = -20801.633490 eV Core-core repulsion = 17569.452686 eV Total energy + Delta-G solvation = -3232.180804 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.09637 -39.52137 -38.35620 -36.89599 -34.94623 -34.16487 -33.33551 -32.08951 -28.21063 -27.60227 -27.12408 -24.36158 -22.97125 -22.78619 -21.15572 -20.84369 -18.95954 -17.90024 -17.15826 -16.77127 -16.73295 -15.98285 -15.89185 -15.80679 -15.38692 -15.13473 -14.74816 -14.54030 -14.13663 -14.05162 -13.68002 -13.43645 -13.13042 -12.91382 -12.73656 -12.59013 -12.33178 -12.29214 -12.03825 -11.57140 -11.45391 -11.34002 -10.95912 -10.79141 -10.64757 -10.17013 -10.00635 -9.87646 -9.58664 -7.94662 -6.21275 -0.13399 0.19302 1.39627 1.44745 1.47563 1.52290 2.08888 2.39450 2.49447 2.96320 3.07096 3.52220 3.62749 3.80941 3.90773 4.12900 4.17116 4.26937 4.31729 4.49445 4.53234 4.60202 4.74482 4.78318 4.83802 4.96180 4.97495 5.12793 5.28745 5.37994 5.39987 5.42887 5.52749 5.59704 5.84257 5.91563 5.98330 6.35941 6.76841 6.94840 7.44391 7.49642 8.90469 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.017285 B = 0.004385 C = 0.004020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.491696 B = 6383.231290 C = 6963.500872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.034 3.966 3 Si 0.946 3.054 4 H -0.274 1.274 5 H -0.295 1.295 6 H -0.267 1.267 7 C -0.502 4.502 8 H 0.061 0.939 9 C 0.006 3.994 10 C 0.174 3.826 11 N -0.670 5.670 12 C 0.539 3.461 13 O -0.601 6.601 14 C -0.148 4.148 15 C -0.084 4.084 16 C -0.121 4.121 17 C -0.071 4.071 18 C -0.120 4.120 19 C 0.017 3.983 20 Cl -0.200 7.200 21 C -0.060 4.060 22 C -0.200 4.200 23 C -0.183 4.183 24 H 0.254 0.746 25 H 0.018 0.982 26 H 0.079 0.921 27 H 0.403 0.597 28 H 0.134 0.866 29 H 0.165 0.835 30 H 0.166 0.834 31 H 0.138 0.862 32 H 0.110 0.890 33 H 0.118 0.882 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.410 -3.301 -17.394 17.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.167 4.167 3 Si 0.773 3.227 4 H -0.200 1.200 5 H -0.221 1.221 6 H -0.191 1.191 7 C -0.540 4.540 8 H 0.079 0.921 9 C 0.005 3.995 10 C 0.050 3.950 11 N -0.316 5.316 12 C 0.327 3.673 13 O -0.486 6.486 14 C -0.151 4.151 15 C -0.103 4.103 16 C -0.139 4.139 17 C -0.089 4.089 18 C -0.120 4.120 19 C -0.045 4.045 20 Cl -0.174 7.174 21 C -0.080 4.080 22 C -0.239 4.239 23 C -0.220 4.220 24 H 0.064 0.936 25 H 0.036 0.964 26 H 0.097 0.903 27 H 0.239 0.761 28 H 0.152 0.848 29 H 0.182 0.818 30 H 0.183 0.817 31 H 0.156 0.844 32 H 0.129 0.871 33 H 0.136 0.864 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.104 0.896 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.527 -3.139 -16.961 17.257 hybrid contribution 0.493 1.065 0.737 1.386 sum -0.035 -2.074 -16.224 16.356 Atomic orbital electron populations 1.70062 1.06865 1.26571 1.49218 1.25608 0.95284 1.01707 0.94141 0.85727 0.78745 0.79989 0.78258 1.19958 1.22108 1.19137 1.20702 0.92740 0.89391 1.51154 0.92078 1.19271 0.93216 0.90813 0.96191 1.20776 0.97907 0.95425 0.80889 1.45455 1.08716 1.66380 1.11042 1.18746 0.84448 0.76995 0.87124 1.90649 1.25801 1.54699 1.77410 1.20026 0.95870 1.06738 0.92458 1.21645 0.95370 0.96266 0.96982 1.21473 1.00925 0.99184 0.92277 1.21630 0.90675 0.94878 1.01691 1.19849 0.96131 1.02970 0.93081 1.23355 0.97280 0.80815 1.03020 1.98747 1.95830 1.23468 1.99309 1.21132 0.98153 0.95352 0.93323 1.22963 1.02252 1.06232 0.92441 1.22956 0.98681 0.98601 1.01804 0.93579 0.96416 0.90275 0.76112 0.84775 0.81781 0.81696 0.84375 0.87134 0.86417 0.90401 0.90672 0.89630 0.89506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -49.38 10.11 21.45 0.22 -49.16 16 2 C 0.03 1.76 5.31 84.66 0.45 2.21 16 3 Si 0.95 41.65 29.54 68.60 2.03 43.67 16 4 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 5 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 6 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 7 C -0.50 -25.12 8.44 25.60 0.22 -24.91 16 8 H 0.06 3.00 7.82 -2.91 -0.02 2.97 16 9 C 0.01 0.27 2.04 -52.93 -0.11 0.16 16 10 C 0.17 8.45 4.62 86.38 0.40 8.85 16 11 N -0.67 -29.54 4.96 -465.98 -2.31 -31.85 16 12 C 0.54 23.97 7.76 86.79 0.67 24.64 16 13 O -0.60 -31.34 16.34 -3.89 -0.06 -31.40 16 14 C -0.15 -5.14 5.87 -20.09 -0.12 -5.26 16 15 C -0.08 -2.30 9.52 22.53 0.21 -2.08 16 16 C -0.12 -2.38 10.03 22.23 0.22 -2.16 16 17 C -0.07 -1.24 9.69 22.33 0.22 -1.03 16 18 C -0.12 -2.61 5.25 -19.90 -0.10 -2.72 16 19 C 0.02 0.27 6.78 71.23 0.48 0.76 16 20 Cl -0.20 -4.32 29.13 -2.72 -0.08 -4.40 16 21 C -0.06 -1.84 9.24 22.53 0.21 -1.64 16 22 C -0.20 -8.49 9.96 30.62 0.30 -8.19 16 23 C -0.18 -7.12 9.92 30.62 0.30 -6.82 16 24 H 0.25 14.09 8.32 -92.71 -0.77 13.32 16 25 H 0.02 0.84 8.09 -2.38 -0.02 0.82 16 26 H 0.08 4.53 5.89 -2.39 -0.01 4.51 16 27 H 0.40 16.34 6.21 -92.71 -0.58 15.77 16 28 H 0.13 3.50 6.47 -2.91 -0.02 3.49 16 29 H 0.16 2.09 8.06 -2.91 -0.02 2.07 16 30 H 0.17 1.64 8.06 -2.91 -0.02 1.62 16 31 H 0.14 1.22 8.08 -2.39 -0.02 1.20 16 32 H 0.11 1.61 8.08 -2.39 -0.02 1.59 16 33 H 0.12 3.93 7.66 -2.91 -0.02 3.91 16 34 H 0.08 3.30 8.14 -2.39 -0.02 3.28 16 35 H 0.07 3.03 8.14 -2.38 -0.02 3.01 16 36 H 0.09 3.03 8.14 -2.39 -0.02 3.01 16 37 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 Total: -1.00 -65.53 331.15 3.66 -61.87 By element: Atomic # 1 Polarization: 28.93 SS G_CDS: 0.51 Total: 29.45 kcal Atomic # 6 Polarization: -21.54 SS G_CDS: 3.36 Total: -18.17 kcal Atomic # 7 Polarization: -78.92 SS G_CDS: -2.10 Total: -81.01 kcal Atomic # 8 Polarization: -31.34 SS G_CDS: -0.06 Total: -31.40 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.67 kcal Atomic # 17 Polarization: -4.32 SS G_CDS: -0.08 Total: -4.40 kcal Total: -65.53 3.66 -61.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404159404.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.427 kcal (2) G-P(sol) polarization free energy of solvation -65.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds