Wall clock time and date at job start Tue Mar 31 2020 06:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 115.55752 * 2 1 4 4 C 1.52996 * 117.50049 * 145.68653 * 2 1 3 5 5 C 1.53001 * 60.03100 * 107.50442 * 4 2 1 6 6 H 1.08997 * 117.50180 * 107.48063 * 5 4 2 7 7 C 1.50704 * 117.50085 * 252.49831 * 5 4 2 8 8 O 1.21286 * 119.99705 * 68.60857 * 7 5 4 9 9 N 1.34774 * 119.99935 * 248.60838 * 7 5 4 10 10 C 1.39159 * 119.99559 * 175.28090 * 9 7 5 11 11 C 1.38607 * 120.21009 * 34.29426 * 10 9 7 12 12 C 1.38185 * 120.17132 * 179.97438 * 11 10 9 13 13 C 1.39008 * 120.60250 * 0.05115 * 12 11 10 14 14 Cl 1.73597 * 119.79051 * 179.97438 * 13 12 11 15 15 C 1.37544 * 120.41965 * 359.97438 * 13 12 11 16 16 C 1.40745 * 119.80927 * 359.65434 * 15 13 12 17 17 C 1.41069 * 120.29188 * 180.34296 * 16 15 13 18 18 H 1.07999 * 120.00246 * 148.83222 * 17 16 15 19 19 C 1.39956 * 120.00015 * 328.83368 * 17 16 15 20 20 N 1.30856 * 120.00170 * 167.55347 * 19 17 16 21 21 Si 1.86802 * 120.00079 * 347.55438 * 19 17 16 22 22 H 1.48497 * 109.47086 * 92.50112 * 21 19 17 23 23 H 1.48500 * 109.46911 * 212.50236 * 21 19 17 24 24 H 1.48504 * 109.47107 * 332.49945 * 21 19 17 25 25 H 1.08997 * 109.47528 * 325.69821 * 1 2 3 26 26 H 1.08998 * 109.47233 * 85.70248 * 1 2 3 27 27 H 1.09002 * 109.46968 * 205.70033 * 1 2 3 28 28 H 1.09001 * 109.46592 * 154.30055 * 3 2 1 29 29 H 1.08994 * 109.46769 * 274.29655 * 3 2 1 30 30 H 1.08998 * 109.46851 * 34.30288 * 3 2 1 31 31 H 1.08996 * 117.50019 * 0.02562 * 4 2 1 32 32 H 1.09005 * 117.50251 * 215.00167 * 4 2 1 33 33 H 0.96997 * 120.00588 * 355.28272 * 9 7 5 34 34 H 1.08003 * 119.91468 * 0.02562 * 11 10 9 35 35 H 1.08002 * 119.70414 * 180.02562 * 12 11 10 36 36 H 1.07997 * 120.09437 * 179.97438 * 15 13 12 37 37 H 0.96993 * 120.00428 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1901 1.3804 0.0000 4 6 2.2365 -1.1209 0.7650 5 6 2.2372 -1.1215 -0.7650 6 1 3.1724 -0.8756 -1.2680 7 6 1.3734 -2.1417 -1.4609 8 8 0.1651 -2.0549 -1.4017 9 7 1.9437 -3.1505 -2.1490 10 6 1.1497 -4.1470 -2.7087 11 6 -0.1079 -3.8405 -3.2044 12 6 -0.8954 -4.8305 -3.7605 13 6 -0.4398 -6.1420 -3.8292 14 17 -1.4470 -7.3692 -4.5316 15 6 0.8039 -6.4736 -3.3443 16 6 1.6237 -5.4776 -2.7814 17 6 2.9039 -5.8050 -2.2875 18 1 3.7005 -5.0769 -2.3273 19 6 3.1417 -7.0735 -1.7461 20 7 4.3681 -7.4663 -1.5137 21 14 1.7085 -8.2060 -1.3553 22 1 1.4403 -9.0854 -2.5213 23 1 2.0445 -9.0398 -0.1733 24 1 0.5013 -7.3929 -1.0604 25 1 -0.3634 0.8489 0.5791 26 1 -0.3633 0.0770 -1.0247 27 1 -0.3633 -0.9260 0.4457 28 1 3.1822 1.3085 0.4457 29 1 2.2774 1.7413 -1.0247 30 1 1.5810 2.0743 0.5792 31 1 1.6113 -1.8586 1.2680 32 1 3.1714 -0.8750 1.2686 33 1 2.9074 -3.1821 -2.2542 34 1 -0.4729 -2.8252 -3.1567 35 1 -1.8739 -4.5832 -4.1449 36 1 1.1524 -7.4943 -3.4000 37 1 4.5330 -8.3455 -1.1388 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000410961629.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:35 Heat of formation + Delta-G solvation = -7.208827 kcal Electronic energy + Delta-G solvation = -21049.184681 eV Core-core repulsion = 17817.447619 eV Total energy + Delta-G solvation = -3231.737062 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.16695 -38.34472 -36.76392 -35.66905 -33.80736 -33.72089 -30.67140 -29.72320 -28.37761 -27.37211 -25.48522 -23.96878 -22.12988 -20.77088 -19.78957 -18.90422 -17.67770 -16.94000 -16.66709 -15.46512 -14.89766 -14.49447 -14.48781 -14.14099 -13.68488 -13.48179 -13.39033 -13.11416 -12.61974 -12.58592 -12.42507 -12.05035 -11.91651 -11.72917 -11.57038 -11.28847 -11.11312 -10.98468 -10.67427 -10.48393 -10.08879 -9.99861 -9.90374 -9.73436 -9.46183 -9.19547 -8.83300 -7.85875 -7.19274 -7.09936 -4.66531 2.12353 2.44802 2.97491 3.00716 3.05958 3.13943 3.24762 3.61409 3.87068 3.96792 4.33729 4.71758 4.81880 4.93557 5.11490 5.13440 5.34049 5.59849 5.64231 5.76786 5.90431 5.93193 6.01233 6.05672 6.08477 6.13762 6.26008 6.43936 6.47022 6.63036 6.72228 6.93746 7.11759 7.18844 7.43914 7.46247 7.76852 8.02049 8.13341 8.38487 8.55530 8.82966 9.90880 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.016018 B = 0.005365 C = 0.004297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.667295 B = 5218.085739 C = 6515.199099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.098 4.098 3 C -0.115 4.115 4 C -0.146 4.146 5 C -0.183 4.183 6 H 0.120 0.880 7 C 0.532 3.468 8 O -0.533 6.533 9 N -0.637 5.637 10 C 0.041 3.959 11 C -0.069 4.069 12 C -0.217 4.217 13 C 0.011 3.989 14 Cl -0.117 7.117 15 C -0.223 4.223 16 C 0.092 3.908 17 C -0.442 4.442 18 H 0.093 0.907 19 C 0.087 3.913 20 N -0.804 5.804 21 Si 0.905 3.095 22 H -0.265 1.265 23 H -0.289 1.289 24 H -0.241 1.241 25 H 0.044 0.956 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.099 0.901 32 H 0.101 0.899 33 H 0.406 0.594 34 H 0.126 0.874 35 H 0.109 0.891 36 H 0.115 0.885 37 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.837 9.732 2.255 10.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.098 4.098 3 C -0.172 4.172 4 C -0.183 4.183 5 C -0.204 4.204 6 H 0.137 0.863 7 C 0.320 3.680 8 O -0.411 6.411 9 N -0.279 5.279 10 C -0.053 4.053 11 C -0.089 4.089 12 C -0.237 4.237 13 C -0.016 4.016 14 Cl -0.089 7.089 15 C -0.243 4.243 16 C 0.087 3.913 17 C -0.470 4.470 18 H 0.111 0.889 19 C -0.133 4.133 20 N -0.428 5.428 21 Si 0.731 3.269 22 H -0.191 1.191 23 H -0.217 1.217 24 H -0.165 1.165 25 H 0.063 0.937 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.118 0.882 32 H 0.119 0.881 33 H 0.242 0.758 34 H 0.144 0.856 35 H 0.127 0.873 36 H 0.133 0.867 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.510 9.545 2.359 10.147 hybrid contribution 0.160 -0.996 0.015 1.009 sum -2.349 8.549 2.375 9.178 Atomic orbital electron populations 1.21335 0.90717 1.01233 1.02530 1.21573 0.95965 0.90351 1.01934 1.21383 0.99849 0.93964 1.01996 1.23196 1.02638 1.01313 0.91180 1.22326 1.01734 1.00551 0.95827 0.86255 1.19618 0.88169 0.81738 0.78481 1.90640 1.14382 1.74505 1.61614 1.42867 1.10515 1.22989 1.51528 1.17632 0.93261 0.88525 1.05864 1.20722 0.93534 0.98834 0.95841 1.20191 1.01149 0.90962 1.11440 1.20635 0.91857 0.88712 1.00398 1.98275 1.70223 1.56668 1.83728 1.20752 0.95060 0.99820 1.08703 1.17407 0.93235 0.89088 0.91594 1.19188 0.94910 0.98900 1.33994 0.88903 1.26079 0.96943 0.97674 0.92615 1.69630 1.21340 1.20164 1.31624 0.86404 0.82546 0.79913 0.78021 1.19099 1.21655 1.16457 0.93709 0.91409 0.91560 0.92403 0.92113 0.91858 0.88230 0.88064 0.75802 0.85592 0.87324 0.86732 0.90139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.36 8.09 37.16 0.30 -1.06 16 2 C -0.10 -1.19 2.70 -154.47 -0.42 -1.61 16 3 C -0.11 -1.08 9.85 37.16 0.37 -0.71 16 4 C -0.15 -1.81 9.52 -26.73 -0.25 -2.06 16 5 C -0.18 -2.50 5.91 -91.73 -0.54 -3.04 16 6 H 0.12 1.38 8.14 -51.93 -0.42 0.96 16 7 C 0.53 9.48 7.44 -10.98 -0.08 9.40 16 8 O -0.53 -10.71 10.49 5.55 0.06 -10.65 16 9 N -0.64 -12.11 5.03 -9.48 -0.05 -12.16 16 10 C 0.04 0.92 6.34 -83.18 -0.53 0.39 16 11 C -0.07 -1.49 8.68 -39.46 -0.34 -1.83 16 12 C -0.22 -4.61 9.82 -39.32 -0.39 -4.99 16 13 C 0.01 0.23 6.31 -39.55 -0.25 -0.02 16 14 Cl -0.12 -2.28 28.94 -51.86 -1.50 -3.78 16 15 C -0.22 -5.26 6.76 -38.89 -0.26 -5.52 16 16 C 0.09 2.18 5.15 -106.66 -0.55 1.63 16 17 C -0.44 -10.87 9.13 -37.87 -0.35 -11.22 16 18 H 0.09 2.28 7.08 -52.49 -0.37 1.91 16 19 C 0.09 2.15 5.47 -17.32 -0.09 2.05 16 20 N -0.80 -20.17 13.93 55.55 0.77 -19.40 16 21 Si 0.90 20.45 24.40 -169.99 -4.15 16.31 16 22 H -0.26 -5.88 6.66 56.52 0.38 -5.50 16 23 H -0.29 -6.32 7.11 56.52 0.40 -5.91 16 24 H -0.24 -5.73 6.69 56.52 0.38 -5.35 16 25 H 0.04 0.50 7.92 -51.93 -0.41 0.09 16 26 H 0.07 1.01 7.26 -51.93 -0.38 0.63 16 27 H 0.07 1.02 7.02 -51.93 -0.36 0.65 16 28 H 0.06 0.48 7.90 -51.93 -0.41 0.07 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.53 7.92 -51.93 -0.41 0.12 16 31 H 0.10 1.36 8.05 -51.93 -0.42 0.95 16 32 H 0.10 1.03 8.05 -51.93 -0.42 0.61 16 33 H 0.41 7.00 7.57 -40.82 -0.31 6.70 16 34 H 0.13 2.66 6.15 -52.48 -0.32 2.33 16 35 H 0.11 2.08 8.06 -52.49 -0.42 1.66 16 36 H 0.12 2.73 4.41 -52.49 -0.23 2.50 16 37 H 0.29 6.63 8.30 -40.82 -0.34 6.29 16 LS Contribution 316.38 15.07 4.77 4.77 Total: -1.00 -26.70 316.38 -7.98 -34.68 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -4.50 Total: 8.83 kcal Atomic # 6 Polarization: -15.21 SS G_CDS: -3.39 Total: -18.59 kcal Atomic # 7 Polarization: -32.28 SS G_CDS: 0.73 Total: -31.56 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.06 Total: -10.65 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -4.15 Total: 16.31 kcal Atomic # 17 Polarization: -2.28 SS G_CDS: -1.50 Total: -3.78 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -26.70 -7.98 -34.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000410961629.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.472 kcal (2) G-P(sol) polarization free energy of solvation -26.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds