Wall clock time and date at job start Tue Mar 31 2020 06:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 115.55752 * 2 1 4 4 C 1.52996 * 117.50049 * 145.68653 * 2 1 3 5 5 C 1.53001 * 60.03100 * 107.50442 * 4 2 1 6 6 H 1.08997 * 117.50180 * 107.48063 * 5 4 2 7 7 C 1.50704 * 117.50085 * 252.49831 * 5 4 2 8 8 O 1.21286 * 119.99705 * 68.60857 * 7 5 4 9 9 N 1.34774 * 119.99935 * 248.60838 * 7 5 4 10 10 C 1.39159 * 119.99559 * 175.28090 * 9 7 5 11 11 C 1.38607 * 120.21009 * 34.29426 * 10 9 7 12 12 C 1.38185 * 120.17132 * 179.97438 * 11 10 9 13 13 C 1.39008 * 120.60250 * 0.05115 * 12 11 10 14 14 Cl 1.73597 * 119.79051 * 179.97438 * 13 12 11 15 15 C 1.37544 * 120.41965 * 359.97438 * 13 12 11 16 16 C 1.40745 * 119.80927 * 359.65434 * 15 13 12 17 17 C 1.41069 * 120.29188 * 180.34296 * 16 15 13 18 18 H 1.07999 * 120.00246 * 148.83222 * 17 16 15 19 19 C 1.39956 * 120.00015 * 328.83368 * 17 16 15 20 20 N 1.30856 * 120.00170 * 167.55347 * 19 17 16 21 21 Si 1.86802 * 120.00079 * 347.55438 * 19 17 16 22 22 H 1.48497 * 109.47086 * 92.50112 * 21 19 17 23 23 H 1.48500 * 109.46911 * 212.50236 * 21 19 17 24 24 H 1.48504 * 109.47107 * 332.49945 * 21 19 17 25 25 H 1.08997 * 109.47528 * 325.69821 * 1 2 3 26 26 H 1.08998 * 109.47233 * 85.70248 * 1 2 3 27 27 H 1.09002 * 109.46968 * 205.70033 * 1 2 3 28 28 H 1.09001 * 109.46592 * 154.30055 * 3 2 1 29 29 H 1.08994 * 109.46769 * 274.29655 * 3 2 1 30 30 H 1.08998 * 109.46851 * 34.30288 * 3 2 1 31 31 H 1.08996 * 117.50019 * 0.02562 * 4 2 1 32 32 H 1.09005 * 117.50251 * 215.00167 * 4 2 1 33 33 H 0.96997 * 120.00588 * 355.28272 * 9 7 5 34 34 H 1.08003 * 119.91468 * 0.02562 * 11 10 9 35 35 H 1.08002 * 119.70414 * 180.02562 * 12 11 10 36 36 H 1.07997 * 120.09437 * 179.97438 * 15 13 12 37 37 H 0.96993 * 120.00428 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1901 1.3804 0.0000 4 6 2.2365 -1.1209 0.7650 5 6 2.2372 -1.1215 -0.7650 6 1 3.1724 -0.8756 -1.2680 7 6 1.3734 -2.1417 -1.4609 8 8 0.1651 -2.0549 -1.4017 9 7 1.9437 -3.1505 -2.1490 10 6 1.1497 -4.1470 -2.7087 11 6 -0.1079 -3.8405 -3.2044 12 6 -0.8954 -4.8305 -3.7605 13 6 -0.4398 -6.1420 -3.8292 14 17 -1.4470 -7.3692 -4.5316 15 6 0.8039 -6.4736 -3.3443 16 6 1.6237 -5.4776 -2.7814 17 6 2.9039 -5.8050 -2.2875 18 1 3.7005 -5.0769 -2.3273 19 6 3.1417 -7.0735 -1.7461 20 7 4.3681 -7.4663 -1.5137 21 14 1.7085 -8.2060 -1.3553 22 1 1.4403 -9.0854 -2.5213 23 1 2.0445 -9.0398 -0.1733 24 1 0.5013 -7.3929 -1.0604 25 1 -0.3634 0.8489 0.5791 26 1 -0.3633 0.0770 -1.0247 27 1 -0.3633 -0.9260 0.4457 28 1 3.1822 1.3085 0.4457 29 1 2.2774 1.7413 -1.0247 30 1 1.5810 2.0743 0.5792 31 1 1.6113 -1.8586 1.2680 32 1 3.1714 -0.8750 1.2686 33 1 2.9074 -3.1821 -2.2542 34 1 -0.4729 -2.8252 -3.1567 35 1 -1.8739 -4.5832 -4.1449 36 1 1.1524 -7.4943 -3.4000 37 1 4.5330 -8.3455 -1.1388 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000410961629.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:34 Heat of formation + Delta-G solvation = -20.793613 kcal Electronic energy + Delta-G solvation = -21049.773762 eV Core-core repulsion = 17817.447619 eV Total energy + Delta-G solvation = -3232.326142 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.58434 -39.85989 -38.11758 -37.28847 -35.55832 -35.37750 -32.47749 -30.96707 -29.79354 -28.28935 -27.24185 -25.32245 -23.80457 -22.34973 -21.20985 -20.05017 -19.51306 -18.49505 -18.09862 -17.15392 -16.29082 -16.22427 -15.99340 -15.43403 -15.10308 -14.99644 -14.58249 -14.48517 -14.33780 -13.97900 -13.76758 -13.43314 -13.34893 -12.98284 -12.85504 -12.80310 -12.65439 -12.38239 -12.16766 -12.08028 -11.79517 -11.62154 -11.26202 -11.12646 -10.89553 -10.65920 -10.31949 -9.66067 -8.96716 -8.88441 -6.53273 0.39981 0.64306 1.22824 1.29771 1.32803 1.41789 1.61369 2.04767 2.27691 2.50342 2.85152 3.29730 3.67978 3.77300 3.89227 4.10863 4.18864 4.23261 4.40131 4.65532 4.70167 4.73088 4.85699 4.87107 4.97921 5.02113 5.10122 5.12858 5.14282 5.15103 5.34631 5.37636 5.46097 5.58429 5.66521 5.76844 5.99312 6.19560 6.43522 6.69715 6.76930 7.34858 8.09983 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.016018 B = 0.005365 C = 0.004297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.667295 B = 5218.085739 C = 6515.199099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.090 4.090 3 C -0.110 4.110 4 C -0.141 4.141 5 C -0.194 4.194 6 H 0.145 0.855 7 C 0.528 3.472 8 O -0.559 6.559 9 N -0.640 5.640 10 C 0.045 3.955 11 C -0.079 4.079 12 C -0.204 4.204 13 C -0.003 4.003 14 Cl -0.093 7.093 15 C -0.235 4.235 16 C 0.074 3.926 17 C -0.459 4.459 18 H 0.084 0.916 19 C 0.061 3.939 20 N -0.834 5.834 21 Si 0.941 3.059 22 H -0.259 1.259 23 H -0.277 1.277 24 H -0.261 1.261 25 H 0.068 0.932 26 H 0.049 0.951 27 H 0.039 0.961 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.130 0.870 33 H 0.413 0.587 34 H 0.132 0.868 35 H 0.133 0.867 36 H 0.109 0.891 37 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.155 11.151 2.572 11.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.091 4.091 3 C -0.167 4.167 4 C -0.178 4.178 5 C -0.215 4.215 6 H 0.163 0.837 7 C 0.318 3.682 8 O -0.438 6.438 9 N -0.283 5.283 10 C -0.051 4.051 11 C -0.100 4.100 12 C -0.224 4.224 13 C -0.030 4.030 14 Cl -0.064 7.064 15 C -0.255 4.255 16 C 0.070 3.930 17 C -0.489 4.489 18 H 0.101 0.899 19 C -0.156 4.156 20 N -0.460 5.460 21 Si 0.767 3.233 22 H -0.185 1.185 23 H -0.204 1.204 24 H -0.185 1.185 25 H 0.087 0.913 26 H 0.068 0.932 27 H 0.058 0.942 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.149 0.851 33 H 0.250 0.750 34 H 0.149 0.851 35 H 0.150 0.850 36 H 0.127 0.873 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.812 10.968 2.679 11.635 hybrid contribution 0.087 -1.335 -0.138 1.344 sum -2.725 9.633 2.541 10.329 Atomic orbital electron populations 1.21270 0.91994 1.00872 1.01491 1.21727 0.95153 0.91688 1.00501 1.21405 1.00637 0.91930 1.02766 1.23294 1.03634 1.00856 0.90020 1.22386 1.02349 1.00307 0.96485 0.83740 1.20396 0.88410 0.81673 0.77728 1.90624 1.15801 1.75118 1.62279 1.42981 1.10746 1.22754 1.51801 1.17846 0.93679 0.88734 1.04792 1.20890 0.93567 0.99341 0.96165 1.20527 1.01797 0.90491 1.09619 1.20722 0.91927 0.89738 1.00594 1.98275 1.69273 1.55659 1.83221 1.20827 0.95878 0.99600 1.09232 1.17552 0.93310 0.90031 0.92157 1.19196 0.95195 0.99102 1.35384 0.89851 1.26472 0.98044 0.98414 0.92634 1.69636 1.22004 1.21042 1.33292 0.85847 0.80169 0.78915 0.78399 1.18517 1.20403 1.18496 0.91315 0.93202 0.94197 0.90731 0.91671 0.90607 0.90151 0.85146 0.74970 0.85063 0.84953 0.87294 0.89429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.57 8.09 71.98 0.58 -1.99 16 2 C -0.09 -2.00 2.70 -52.16 -0.14 -2.14 16 3 C -0.11 -1.68 9.85 71.98 0.71 -0.97 16 4 C -0.14 -3.21 9.52 30.59 0.29 -2.92 16 5 C -0.19 -4.98 5.91 -11.51 -0.07 -5.05 16 6 H 0.14 2.96 8.14 -2.39 -0.02 2.94 16 7 C 0.53 18.61 7.44 87.66 0.65 19.26 16 8 O -0.56 -22.48 10.49 -3.05 -0.03 -22.51 16 9 N -0.64 -24.33 5.03 -302.30 -1.52 -25.85 16 10 C 0.04 1.98 6.34 38.86 0.25 2.22 16 11 C -0.08 -3.36 8.68 22.35 0.19 -3.17 16 12 C -0.20 -8.38 9.82 22.44 0.22 -8.16 16 13 C 0.00 -0.13 6.31 22.29 0.14 0.02 16 14 Cl -0.09 -3.45 28.94 -2.72 -0.08 -3.53 16 15 C -0.23 -11.05 6.76 22.72 0.15 -10.90 16 16 C 0.07 3.56 5.15 -21.18 -0.11 3.45 16 17 C -0.46 -23.07 9.13 23.38 0.21 -22.86 16 18 H 0.08 4.21 7.08 -2.91 -0.02 4.19 16 19 C 0.06 3.06 5.47 85.25 0.47 3.53 16 20 N -0.83 -42.37 13.93 21.83 0.30 -42.06 16 21 Si 0.94 42.15 24.40 68.60 1.67 43.83 16 22 H -0.26 -11.25 6.66 99.48 0.66 -10.59 16 23 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 24 H -0.26 -12.38 6.69 99.48 0.67 -11.71 16 25 H 0.07 1.41 7.92 -2.39 -0.02 1.39 16 26 H 0.05 1.46 7.26 -2.39 -0.02 1.44 16 27 H 0.04 1.22 7.02 -2.39 -0.02 1.21 16 28 H 0.07 0.92 7.90 -2.39 -0.02 0.90 16 29 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.07 0.99 7.92 -2.39 -0.02 0.97 16 31 H 0.08 2.16 8.05 -2.39 -0.02 2.14 16 32 H 0.13 2.22 8.05 -2.38 -0.02 2.20 16 33 H 0.41 14.30 7.57 -92.71 -0.70 13.60 16 34 H 0.13 5.46 6.15 -2.91 -0.02 5.44 16 35 H 0.13 4.75 8.06 -2.91 -0.02 4.72 16 36 H 0.11 5.19 4.41 -2.91 -0.01 5.18 16 37 H 0.29 13.68 8.30 -92.71 -0.77 12.91 16 Total: -1.00 -57.17 316.38 4.22 -52.95 By element: Atomic # 1 Polarization: 26.52 SS G_CDS: 0.32 Total: 26.84 kcal Atomic # 6 Polarization: -33.23 SS G_CDS: 3.55 Total: -29.67 kcal Atomic # 7 Polarization: -66.70 SS G_CDS: -1.22 Total: -67.91 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: -0.03 Total: -22.51 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 1.67 Total: 43.83 kcal Atomic # 17 Polarization: -3.45 SS G_CDS: -0.08 Total: -3.53 kcal Total: -57.17 4.22 -52.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000410961629.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.161 kcal (2) G-P(sol) polarization free energy of solvation -57.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds