Wall clock time and date at job start Tue Mar 31 2020 07:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53008 * 109.46715 * 2 1 4 4 H 1.09000 * 115.56009 * 29.31293 * 3 2 1 5 5 C 1.52998 * 117.49541 * 243.61747 * 3 2 1 6 6 C 1.52995 * 117.49791 * 174.99668 * 3 2 1 7 7 H 1.09012 * 117.51871 * 0.02562 * 6 3 2 8 8 C 1.50703 * 117.50080 * 214.97791 * 6 3 2 9 9 O 1.21279 * 119.99582 * 359.97438 * 8 6 3 10 10 N 1.34774 * 119.99683 * 179.97438 * 8 6 3 11 11 C 1.39158 * 119.99425 * 185.11421 * 10 8 6 12 12 C 1.38603 * 120.21386 * 20.37386 * 11 10 8 13 13 C 1.38184 * 120.17274 * 180.29619 * 12 11 10 14 14 C 1.39004 * 120.60455 * 359.70057 * 13 12 11 15 15 Cl 1.73601 * 119.79052 * 180.02562 * 14 13 12 16 16 C 1.37547 * 120.41597 * 0.02562 * 14 13 12 17 17 C 1.40737 * 119.81213 * 0.02562 * 16 14 13 18 18 C 1.41071 * 120.28773 * 179.97438 * 17 16 14 19 19 H 1.08005 * 119.99126 * 154.38838 * 18 17 16 20 20 C 1.39953 * 120.00465 * 334.39290 * 18 17 16 21 21 N 1.30855 * 119.99362 * 329.58942 * 20 18 17 22 22 Si 1.86794 * 120.00015 * 149.59134 * 20 18 17 23 23 H 1.48504 * 109.46728 * 179.97438 * 22 20 18 24 24 H 1.48493 * 109.47249 * 300.00047 * 22 20 18 25 25 H 1.48502 * 109.47330 * 60.00111 * 22 20 18 26 26 H 1.09002 * 109.47091 * 60.00849 * 1 2 3 27 27 H 1.09005 * 109.46544 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47768 * 299.99633 * 1 2 3 29 29 H 1.08993 * 109.47157 * 240.00084 * 2 1 3 30 30 H 1.09000 * 109.46732 * 119.99538 * 2 1 3 31 31 H 1.09005 * 117.49360 * 145.02108 * 5 3 2 32 32 H 1.09000 * 117.52206 * 359.97438 * 5 3 2 33 33 H 0.96996 * 120.00476 * 5.12110 * 10 8 6 34 34 H 1.08004 * 119.91119 * 359.97438 * 12 11 10 35 35 H 1.08000 * 119.70148 * 179.71862 * 13 12 11 36 36 H 1.07996 * 120.08940 * 180.02562 * 16 14 13 37 37 H 0.96994 * 120.00478 * 353.72946 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.3883 2.1718 0.4814 5 6 2.8439 1.9076 -1.2158 6 6 3.5500 1.6581 0.1184 7 1 4.1806 0.7723 0.1958 8 6 4.0226 2.8623 0.8915 9 8 3.2155 3.6171 1.3910 10 7 5.3422 3.1002 1.0277 11 6 5.7808 4.1498 1.8292 12 6 4.9478 4.6797 2.8020 13 6 5.3819 5.7260 3.5933 14 6 6.6567 6.2554 3.4297 15 17 7.1806 7.5695 4.4360 16 6 7.5057 5.7446 2.4757 17 6 7.0812 4.6796 1.6594 18 6 7.9435 4.1484 0.6773 19 1 7.8221 3.1271 0.3476 20 6 8.9562 4.9447 0.1305 21 7 8.7882 6.2384 0.0291 22 14 10.5474 4.1606 -0.4547 23 1 11.4500 5.2119 -0.9888 24 1 11.2076 3.4719 0.6832 25 1 10.2493 3.1746 -1.5244 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3634 0.5137 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.7211 2.9428 -1.5343 32 1 3.0102 1.1860 -2.0157 33 1 5.9862 2.5399 0.5670 34 1 3.9549 4.2772 2.9384 35 1 4.7248 6.1361 4.3460 36 1 8.4952 6.1596 2.3534 37 1 7.9303 6.6347 0.2473 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000410963578.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:02 Heat of formation + Delta-G solvation = -20.361081 kcal Electronic energy + Delta-G solvation = -20562.177301 eV Core-core repulsion = 17329.869914 eV Total energy + Delta-G solvation = -3232.307386 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.03977 -38.11218 -36.72682 -35.57618 -34.03965 -33.68951 -32.13014 -29.63312 -28.59021 -25.46819 -24.42060 -23.70398 -21.77551 -20.98079 -20.33554 -19.43678 -18.16803 -17.08761 -16.34743 -15.33159 -14.90573 -14.86186 -14.41983 -14.26768 -14.17409 -13.65100 -13.07031 -12.74053 -12.65441 -12.45855 -12.23956 -12.10201 -12.09285 -11.43860 -11.33227 -11.17763 -11.11375 -10.96588 -10.58676 -10.49372 -10.27230 -10.21066 -10.02489 -9.69405 -9.38895 -9.17400 -8.83390 -7.84194 -7.47715 -7.00498 -4.58684 2.25281 2.62154 3.05321 3.06030 3.14301 3.19329 3.26832 3.62759 3.88633 3.94705 4.36659 4.66517 4.77190 4.86079 5.08452 5.21018 5.23774 5.30666 5.36222 5.60705 5.72563 5.80576 5.91742 6.01380 6.01858 6.18032 6.24628 6.32273 6.58464 6.68378 6.87832 7.09235 7.33187 7.45403 7.57436 7.61580 7.78567 7.97579 8.19886 8.48049 8.59820 8.83064 9.84410 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.013515 B = 0.004723 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.208737 B = 5926.962633 C = 7740.290606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.094 4.094 3 C -0.119 4.119 4 H 0.117 0.883 5 C -0.150 4.150 6 C -0.186 4.186 7 H 0.121 0.879 8 C 0.526 3.474 9 O -0.539 6.539 10 N -0.631 5.631 11 C 0.020 3.980 12 C -0.083 4.083 13 C -0.231 4.231 14 C 0.007 3.993 15 Cl -0.121 7.121 16 C -0.205 4.205 17 C 0.097 3.903 18 C -0.525 4.525 19 H 0.077 0.923 20 C 0.045 3.955 21 N -0.776 5.776 22 Si 1.061 2.939 23 H -0.272 1.272 24 H -0.272 1.272 25 H -0.275 1.275 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.099 0.901 32 H 0.102 0.898 33 H 0.406 0.594 34 H 0.136 0.864 35 H 0.104 0.896 36 H 0.118 0.882 37 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.667 -9.763 -2.492 12.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.132 4.132 3 C -0.138 4.138 4 H 0.135 0.865 5 C -0.187 4.187 6 C -0.207 4.207 7 H 0.138 0.862 8 C 0.314 3.686 9 O -0.418 6.418 10 N -0.271 5.271 11 C -0.074 4.074 12 C -0.103 4.103 13 C -0.251 4.251 14 C -0.020 4.020 15 Cl -0.093 7.093 16 C -0.225 4.225 17 C 0.092 3.908 18 C -0.552 4.552 19 H 0.095 0.905 20 C -0.180 4.180 21 N -0.397 5.397 22 Si 0.884 3.116 23 H -0.197 1.197 24 H -0.198 1.198 25 H -0.200 1.200 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.117 0.883 32 H 0.120 0.880 33 H 0.242 0.758 34 H 0.153 0.847 35 H 0.122 0.878 36 H 0.136 0.864 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -5.708 -8.739 -2.702 10.782 hybrid contribution -0.975 -0.394 0.526 1.176 sum -6.683 -9.132 -2.176 11.524 Atomic orbital electron populations 1.21738 0.95319 1.01424 1.02160 1.21148 0.96135 0.93851 1.02025 1.22448 0.91654 0.98430 1.01275 0.86467 1.23085 1.02198 1.03126 0.90323 1.22288 0.97374 0.99044 1.02010 0.86151 1.19594 0.82368 0.85765 0.80907 1.90565 1.54176 1.48058 1.48989 1.42867 1.06609 1.31139 1.46503 1.17708 0.94606 0.97288 0.97818 1.20987 0.99872 0.96189 0.93274 1.20138 0.95412 1.03254 1.06315 1.20691 0.95308 0.91099 0.94924 1.98264 1.91177 1.49960 1.69901 1.20770 0.99560 1.03368 0.98843 1.17217 0.89822 0.91137 0.92588 1.20209 1.13863 1.00847 1.20313 0.90475 1.27002 1.03362 0.94253 0.93355 1.70460 1.28714 1.12352 1.28213 0.83687 0.74271 0.76223 0.77404 1.19706 1.19772 1.20046 0.92561 0.92783 0.92491 0.91759 0.91487 0.88296 0.88015 0.75827 0.84701 0.87834 0.86427 0.88590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.87 37.16 0.37 -0.88 16 2 C -0.09 -0.88 6.22 -26.73 -0.17 -1.04 16 3 C -0.12 -1.44 5.25 -90.62 -0.48 -1.91 16 4 H 0.12 1.63 7.60 -51.93 -0.39 1.23 16 5 C -0.15 -1.77 9.88 -26.73 -0.26 -2.04 16 6 C -0.19 -2.52 5.91 -91.77 -0.54 -3.07 16 7 H 0.12 1.37 8.14 -51.92 -0.42 0.95 16 8 C 0.53 9.76 7.45 -10.99 -0.08 9.68 16 9 O -0.54 -11.66 13.16 5.56 0.07 -11.59 16 10 N -0.63 -12.47 5.20 -9.48 -0.05 -12.52 16 11 C 0.02 0.46 6.52 -83.18 -0.54 -0.08 16 12 C -0.08 -1.94 8.76 -39.47 -0.35 -2.28 16 13 C -0.23 -5.30 9.82 -39.32 -0.39 -5.69 16 14 C 0.01 0.15 6.31 -39.55 -0.25 -0.10 16 15 Cl -0.12 -2.49 28.94 -51.86 -1.50 -4.00 16 16 C -0.20 -5.07 7.90 -38.89 -0.31 -5.38 16 17 C 0.10 2.39 5.27 -106.66 -0.56 1.83 16 18 C -0.53 -12.49 8.49 -37.87 -0.32 -12.81 16 19 H 0.08 1.70 6.72 -52.48 -0.35 1.34 16 20 C 0.04 1.05 4.80 -17.33 -0.08 0.97 16 21 N -0.78 -19.53 12.39 55.55 0.69 -18.84 16 22 Si 1.06 19.93 30.03 -169.99 -5.10 14.82 16 23 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 24 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 25 H -0.28 -4.82 7.11 56.52 0.40 -4.42 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.53 7.88 -51.93 -0.41 0.12 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.10 0.96 8.03 -51.93 -0.42 0.54 16 33 H 0.41 7.18 7.10 -40.82 -0.29 6.89 16 34 H 0.14 3.14 5.44 -52.48 -0.29 2.85 16 35 H 0.10 2.19 8.06 -52.49 -0.42 1.76 16 36 H 0.12 3.02 6.71 -52.49 -0.35 2.67 16 37 H 0.30 7.91 7.16 -40.82 -0.29 7.62 16 LS Contribution 327.04 15.07 4.93 4.93 Total: -1.00 -27.22 327.04 -9.47 -36.70 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: -4.55 Total: 13.31 kcal Atomic # 6 Polarization: -18.85 SS G_CDS: -3.96 Total: -22.81 kcal Atomic # 7 Polarization: -32.00 SS G_CDS: 0.64 Total: -31.36 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: 0.07 Total: -11.59 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.10 Total: 14.82 kcal Atomic # 17 Polarization: -2.49 SS G_CDS: -1.50 Total: -4.00 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -27.22 -9.47 -36.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000410963578.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.336 kcal (2) G-P(sol) polarization free energy of solvation -27.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds