Wall clock time and date at job start Tue Mar 31 2020 07:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53008 * 109.46715 * 2 1 4 4 H 1.09000 * 115.56009 * 29.31293 * 3 2 1 5 5 C 1.52998 * 117.49541 * 243.61747 * 3 2 1 6 6 C 1.52995 * 117.49791 * 174.99668 * 3 2 1 7 7 H 1.09012 * 117.51871 * 0.02562 * 6 3 2 8 8 C 1.50703 * 117.50080 * 214.97791 * 6 3 2 9 9 O 1.21279 * 119.99582 * 359.97438 * 8 6 3 10 10 N 1.34774 * 119.99683 * 179.97438 * 8 6 3 11 11 C 1.39158 * 119.99425 * 185.11421 * 10 8 6 12 12 C 1.38603 * 120.21386 * 20.37386 * 11 10 8 13 13 C 1.38184 * 120.17274 * 180.29619 * 12 11 10 14 14 C 1.39004 * 120.60455 * 359.70057 * 13 12 11 15 15 Cl 1.73601 * 119.79052 * 180.02562 * 14 13 12 16 16 C 1.37547 * 120.41597 * 0.02562 * 14 13 12 17 17 C 1.40737 * 119.81213 * 0.02562 * 16 14 13 18 18 C 1.41071 * 120.28773 * 179.97438 * 17 16 14 19 19 H 1.08005 * 119.99126 * 154.38838 * 18 17 16 20 20 C 1.39953 * 120.00465 * 334.39290 * 18 17 16 21 21 N 1.30855 * 119.99362 * 329.58942 * 20 18 17 22 22 Si 1.86794 * 120.00015 * 149.59134 * 20 18 17 23 23 H 1.48504 * 109.46728 * 179.97438 * 22 20 18 24 24 H 1.48493 * 109.47249 * 300.00047 * 22 20 18 25 25 H 1.48502 * 109.47330 * 60.00111 * 22 20 18 26 26 H 1.09002 * 109.47091 * 60.00849 * 1 2 3 27 27 H 1.09005 * 109.46544 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47768 * 299.99633 * 1 2 3 29 29 H 1.08993 * 109.47157 * 240.00084 * 2 1 3 30 30 H 1.09000 * 109.46732 * 119.99538 * 2 1 3 31 31 H 1.09005 * 117.49360 * 145.02108 * 5 3 2 32 32 H 1.09000 * 117.52206 * 359.97438 * 5 3 2 33 33 H 0.96996 * 120.00476 * 5.12110 * 10 8 6 34 34 H 1.08004 * 119.91119 * 359.97438 * 12 11 10 35 35 H 1.08000 * 119.70148 * 179.71862 * 13 12 11 36 36 H 1.07996 * 120.08940 * 180.02562 * 16 14 13 37 37 H 0.96994 * 120.00478 * 353.72946 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.3883 2.1718 0.4814 5 6 2.8439 1.9076 -1.2158 6 6 3.5500 1.6581 0.1184 7 1 4.1806 0.7723 0.1958 8 6 4.0226 2.8623 0.8915 9 8 3.2155 3.6171 1.3910 10 7 5.3422 3.1002 1.0277 11 6 5.7808 4.1498 1.8292 12 6 4.9478 4.6797 2.8020 13 6 5.3819 5.7260 3.5933 14 6 6.6567 6.2554 3.4297 15 17 7.1806 7.5695 4.4360 16 6 7.5057 5.7446 2.4757 17 6 7.0812 4.6796 1.6594 18 6 7.9435 4.1484 0.6773 19 1 7.8221 3.1271 0.3476 20 6 8.9562 4.9447 0.1305 21 7 8.7882 6.2384 0.0291 22 14 10.5474 4.1606 -0.4547 23 1 11.4500 5.2119 -0.9888 24 1 11.2076 3.4719 0.6832 25 1 10.2493 3.1746 -1.5244 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3634 0.5137 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.7211 2.9428 -1.5343 32 1 3.0102 1.1860 -2.0157 33 1 5.9862 2.5399 0.5670 34 1 3.9549 4.2772 2.9384 35 1 4.7248 6.1361 4.3460 36 1 8.4952 6.1596 2.3534 37 1 7.9303 6.6347 0.2473 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000410963578.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:01 Heat of formation + Delta-G solvation = -33.149578 kcal Electronic energy + Delta-G solvation = -20562.731851 eV Core-core repulsion = 17329.869914 eV Total energy + Delta-G solvation = -3232.861937 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.55526 -39.66472 -38.03412 -37.30196 -35.81021 -35.39380 -32.92776 -31.47663 -30.32838 -27.23887 -25.69520 -24.61481 -23.51284 -22.57029 -21.36861 -20.90696 -19.94779 -18.57517 -17.96203 -17.06587 -16.30106 -16.16917 -15.77018 -15.56345 -15.42441 -15.09787 -14.69434 -14.54370 -14.16061 -13.91545 -13.48471 -13.35598 -13.03145 -12.98010 -12.79815 -12.71017 -12.27896 -12.17765 -12.01990 -11.92159 -11.91224 -11.45123 -11.20428 -11.07854 -10.97192 -10.87571 -10.48844 -9.71948 -9.33624 -8.79925 -6.45169 0.49191 0.77767 1.37871 1.54442 1.58439 1.64261 1.82263 2.23671 2.32593 2.58462 2.85769 3.37476 3.64218 3.74833 3.85529 4.14080 4.27974 4.32189 4.43671 4.49671 4.58272 4.77268 4.78648 4.83767 4.93209 4.98184 5.09344 5.16310 5.23958 5.25015 5.30988 5.50904 5.51415 5.59140 5.72054 5.79499 5.94434 6.14636 6.48417 6.75825 6.80941 7.28503 7.95072 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.013515 B = 0.004723 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.208737 B = 5926.962633 C = 7740.290606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.089 4.089 3 C -0.114 4.114 4 H 0.092 0.908 5 C -0.137 4.137 6 C -0.194 4.194 7 H 0.150 0.850 8 C 0.522 3.478 9 O -0.575 6.575 10 N -0.631 5.631 11 C 0.018 3.982 12 C -0.097 4.097 13 C -0.233 4.233 14 C -0.003 4.003 15 Cl -0.099 7.099 16 C -0.222 4.222 17 C 0.074 3.926 18 C -0.539 4.539 19 H 0.093 0.907 20 C 0.012 3.988 21 N -0.800 5.800 22 Si 1.112 2.888 23 H -0.279 1.279 24 H -0.264 1.264 25 H -0.249 1.249 26 H 0.057 0.943 27 H 0.070 0.930 28 H 0.046 0.954 29 H 0.085 0.915 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.136 0.864 33 H 0.416 0.584 34 H 0.135 0.865 35 H 0.120 0.880 36 H 0.102 0.898 37 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.656 -12.136 -3.607 14.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.126 4.126 3 C -0.133 4.133 4 H 0.110 0.890 5 C -0.174 4.174 6 C -0.215 4.215 7 H 0.168 0.832 8 C 0.312 3.688 9 O -0.456 6.456 10 N -0.272 5.272 11 C -0.077 4.077 12 C -0.117 4.117 13 C -0.253 4.253 14 C -0.030 4.030 15 Cl -0.070 7.070 16 C -0.243 4.243 17 C 0.070 3.930 18 C -0.566 4.566 19 H 0.111 0.889 20 C -0.207 4.207 21 N -0.421 5.421 22 Si 0.929 3.071 23 H -0.204 1.204 24 H -0.189 1.189 25 H -0.173 1.173 26 H 0.076 0.924 27 H 0.088 0.912 28 H 0.065 0.935 29 H 0.103 0.897 30 H 0.088 0.912 31 H 0.099 0.901 32 H 0.154 0.846 33 H 0.253 0.747 34 H 0.153 0.847 35 H 0.138 0.862 36 H 0.120 0.880 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.720 -11.135 -3.823 13.089 hybrid contribution -1.088 0.394 0.930 1.485 sum -6.809 -10.740 -2.893 13.041 Atomic orbital electron populations 1.21746 0.94805 1.02367 1.01773 1.21169 0.96535 0.91743 1.03162 1.22508 0.90141 0.99783 1.00874 0.88966 1.23212 1.00623 1.03146 0.90463 1.22311 0.98813 0.97578 1.02784 0.83224 1.20516 0.81408 0.86606 0.80261 1.90538 1.54853 1.49739 1.50451 1.42928 1.07561 1.30453 1.46288 1.17885 0.94204 0.97772 0.97842 1.21127 1.00012 0.96803 0.93800 1.20372 0.95484 1.03023 1.06412 1.20764 0.95336 0.91778 0.95084 1.98257 1.91008 1.48705 1.69042 1.20730 0.99293 1.04303 0.99964 1.17515 0.90662 0.91576 0.93258 1.20489 1.14224 1.01605 1.20283 0.88886 1.28404 1.06061 0.93853 0.92376 1.70584 1.27688 1.13470 1.30346 0.83065 0.70391 0.75745 0.77884 1.20378 1.18875 1.17255 0.92407 0.91151 0.93527 0.89682 0.91212 0.90068 0.84553 0.74680 0.84745 0.86199 0.87983 0.90591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.87 71.98 0.71 -1.46 16 2 C -0.09 -1.39 6.22 30.60 0.19 -1.20 16 3 C -0.11 -2.55 5.25 -10.79 -0.06 -2.61 16 4 H 0.09 2.55 7.60 -2.39 -0.02 2.53 16 5 C -0.14 -2.91 9.88 30.59 0.30 -2.61 16 6 C -0.19 -4.88 5.91 -11.54 -0.07 -4.95 16 7 H 0.15 2.89 8.14 -2.38 -0.02 2.88 16 8 C 0.52 19.20 7.45 87.66 0.65 19.85 16 9 O -0.57 -25.28 13.16 -3.03 -0.04 -25.32 16 10 N -0.63 -24.78 5.20 -302.31 -1.57 -26.36 16 11 C 0.02 0.85 6.52 38.86 0.25 1.11 16 12 C -0.10 -4.60 8.76 22.34 0.20 -4.41 16 13 C -0.23 -10.78 9.82 22.44 0.22 -10.56 16 14 C 0.00 -0.13 6.31 22.29 0.14 0.01 16 15 Cl -0.10 -4.04 28.94 -2.72 -0.08 -4.12 16 16 C -0.22 -11.29 7.90 22.72 0.18 -11.11 16 17 C 0.07 3.73 5.27 -21.18 -0.11 3.62 16 18 C -0.54 -25.61 8.49 23.38 0.20 -25.41 16 19 H 0.09 3.99 6.72 -2.91 -0.02 3.97 16 20 C 0.01 0.57 4.80 85.25 0.41 0.97 16 21 N -0.80 -41.04 12.39 21.83 0.27 -40.77 16 22 Si 1.11 39.04 30.03 68.60 2.06 41.10 16 23 H -0.28 -10.02 7.11 99.48 0.71 -9.31 16 24 H -0.26 -8.87 7.11 99.48 0.71 -8.17 16 25 H -0.25 -7.67 7.11 99.48 0.71 -6.96 16 26 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 28 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.08 1.02 7.88 -2.39 -0.02 1.00 16 30 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 32 H 0.14 1.98 8.03 -2.39 -0.02 1.96 16 33 H 0.42 14.28 7.10 -92.71 -0.66 13.63 16 34 H 0.14 6.39 5.44 -2.91 -0.02 6.37 16 35 H 0.12 5.04 8.06 -2.91 -0.02 5.02 16 36 H 0.10 5.42 6.71 -2.91 -0.02 5.41 16 37 H 0.28 15.42 7.16 -92.71 -0.66 14.76 16 Total: -1.00 -60.14 327.04 4.40 -55.74 By element: Atomic # 1 Polarization: 37.94 SS G_CDS: 0.55 Total: 38.49 kcal Atomic # 6 Polarization: -41.97 SS G_CDS: 3.22 Total: -38.76 kcal Atomic # 7 Polarization: -65.82 SS G_CDS: -1.30 Total: -67.13 kcal Atomic # 8 Polarization: -25.28 SS G_CDS: -0.04 Total: -25.32 kcal Atomic # 14 Polarization: 39.04 SS G_CDS: 2.06 Total: 41.10 kcal Atomic # 17 Polarization: -4.04 SS G_CDS: -0.08 Total: -4.12 kcal Total: -60.14 4.40 -55.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000410963578.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.589 kcal (2) G-P(sol) polarization free energy of solvation -60.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds