Wall clock time and date at job start Tue Mar 31 2020 07:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50701 * 120.00219 * 2 1 4 4 C 1.52997 * 109.47155 * 125.00040 * 3 2 1 5 5 C 1.52999 * 109.47265 * 180.02562 * 4 3 2 6 6 C 1.50695 * 109.47373 * 180.02562 * 5 4 3 7 7 O 1.21286 * 120.00081 * 359.97438 * 6 5 4 8 8 N 1.34775 * 120.00291 * 179.97438 * 6 5 4 9 9 C 1.39144 * 120.00265 * 175.54350 * 8 6 5 10 10 C 1.38612 * 120.20717 * 28.68492 * 9 8 6 11 11 C 1.38195 * 120.16896 * 179.97438 * 10 9 8 12 12 C 1.38997 * 120.60322 * 0.02562 * 11 10 9 13 13 Cl 1.73604 * 119.78676 * 180.02562 * 12 11 10 14 14 C 1.37548 * 120.42375 * 359.73651 * 12 11 10 15 15 C 1.40739 * 119.80588 * 0.49408 * 14 12 11 16 16 C 1.41069 * 120.29122 * 179.78738 * 15 14 12 17 17 H 1.08005 * 120.00276 * 207.50917 * 16 15 14 18 18 C 1.39956 * 120.00071 * 27.77859 * 16 15 14 19 19 N 1.30861 * 119.99646 * 12.24473 * 18 16 15 20 20 Si 1.86793 * 120.00130 * 192.24951 * 18 16 15 21 21 H 1.48497 * 109.47345 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47482 * 120.00060 * 20 18 16 23 23 H 1.48505 * 109.47115 * 239.99950 * 20 18 16 24 24 H 1.08000 * 120.00030 * 0.02562 * 1 2 3 25 25 H 1.08000 * 120.00088 * 179.97438 * 1 2 3 26 26 H 1.08001 * 119.99684 * 180.02562 * 2 1 3 27 27 H 1.08997 * 109.47078 * 4.99786 * 3 2 1 28 28 H 1.09005 * 109.47117 * 244.99966 * 3 2 1 29 29 H 1.08997 * 109.47335 * 59.99903 * 4 3 2 30 30 H 1.09005 * 109.47047 * 299.99968 * 4 3 2 31 31 H 1.08997 * 109.47121 * 59.99652 * 5 4 3 32 32 H 1.09005 * 109.46965 * 299.99899 * 5 4 3 33 33 H 0.97003 * 119.99747 * 355.55508 * 8 6 5 34 34 H 1.07998 * 119.91561 * 359.97438 * 10 9 8 35 35 H 1.07996 * 119.69394 * 180.02562 * 11 10 9 36 36 H 1.07996 * 120.09359 * 180.25648 * 14 12 11 37 37 H 0.96999 * 119.99919 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 6 3.7997 2.6583 1.1820 6 6 4.7571 2.6856 2.3454 7 8 4.8212 1.7385 3.1004 8 7 5.5421 3.7624 2.5471 9 6 6.3582 3.8275 3.6722 10 6 6.8406 2.6646 4.2521 11 6 7.6516 2.7303 5.3692 12 6 7.9929 3.9578 5.9247 13 17 9.0135 4.0156 7.3278 14 6 7.5319 5.1273 5.3664 15 6 6.7009 5.0807 4.2315 16 6 6.2186 6.2737 3.6532 17 1 5.2844 6.2720 3.1112 18 6 6.9536 7.4583 3.7770 19 7 8.1871 7.4205 4.2121 20 14 6.1736 9.0933 3.3213 21 1 4.7806 8.8657 2.8598 22 1 6.1626 9.9847 4.5090 23 1 6.9577 9.7293 2.2323 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3587 2.1316 0.0895 28 1 2.6214 1.4026 -0.9314 29 1 3.7400 0.5065 1.0921 30 1 2.4773 1.2355 2.1130 31 1 3.0945 3.4845 1.2717 32 1 4.3575 2.7562 0.2506 33 1 5.5380 4.4921 1.9080 34 1 6.5821 1.7048 3.8298 35 1 8.0235 1.8194 5.8145 36 1 7.8037 6.0783 5.7999 37 1 8.6967 8.2414 4.2976 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000410974875.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:01 Heat of formation + Delta-G solvation = -25.892337 kcal Electronic energy + Delta-G solvation = -20217.340228 eV Core-core repulsion = 16984.792989 eV Total energy + Delta-G solvation = -3232.547240 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.72059 -37.52721 -36.02621 -35.42713 -33.84609 -33.58225 -32.35167 -29.82164 -28.69976 -26.91038 -25.36174 -22.64899 -21.52136 -20.60361 -20.00819 -19.36668 -17.57480 -16.80848 -16.20310 -15.88185 -15.42921 -14.94177 -14.64293 -14.16547 -13.75832 -13.47045 -13.22860 -12.95355 -12.71804 -12.32935 -12.10468 -11.79380 -11.65622 -11.53715 -11.49345 -11.27545 -10.99016 -10.88403 -10.68994 -10.51459 -10.43746 -10.27310 -9.68402 -9.47659 -9.38330 -9.20060 -8.78756 -7.59141 -7.06595 -6.77038 -4.55975 2.13774 2.39780 2.71448 2.98181 3.01599 3.06352 3.30281 3.33648 3.78963 3.87758 4.45244 4.69983 4.89133 5.07022 5.16657 5.25234 5.40718 5.47160 5.60707 5.70425 5.71925 5.83166 6.15159 6.29652 6.34517 6.38530 6.48999 6.63258 6.74373 6.81939 7.00501 7.02034 7.32229 7.51096 7.70601 7.80112 7.91719 8.24102 8.36082 8.62510 8.67620 8.91537 10.03033 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.013315 B = 0.004176 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.418150 B = 6703.861064 C = 8617.616366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.148 4.148 3 C -0.097 4.097 4 C -0.098 4.098 5 C -0.139 4.139 6 C 0.496 3.504 7 O -0.540 6.540 8 N -0.639 5.639 9 C 0.023 3.977 10 C -0.086 4.086 11 C -0.216 4.216 12 C -0.015 4.015 13 Cl -0.125 7.125 14 C -0.141 4.141 15 C 0.106 3.894 16 C -0.463 4.463 17 H 0.080 0.920 18 C 0.075 3.925 19 N -0.789 5.789 20 Si 0.912 3.088 21 H -0.261 1.261 22 H -0.271 1.271 23 H -0.273 1.273 24 H 0.095 0.905 25 H 0.094 0.906 26 H 0.108 0.892 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.405 0.595 34 H 0.129 0.871 35 H 0.102 0.898 36 H 0.135 0.865 37 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.710 -4.487 -7.467 11.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.166 4.166 3 C -0.134 4.134 4 C -0.136 4.136 5 C -0.180 4.180 6 C 0.284 3.716 7 O -0.419 6.419 8 N -0.281 5.281 9 C -0.072 4.072 10 C -0.107 4.107 11 C -0.237 4.237 12 C -0.042 4.042 13 Cl -0.097 7.097 14 C -0.162 4.162 15 C 0.102 3.898 16 C -0.493 4.493 17 H 0.098 0.902 18 C -0.143 4.143 19 N -0.414 5.414 20 Si 0.736 3.264 21 H -0.184 1.184 22 H -0.196 1.196 23 H -0.199 1.199 24 H 0.113 0.887 25 H 0.113 0.887 26 H 0.126 0.874 27 H 0.085 0.915 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.109 0.891 32 H 0.108 0.892 33 H 0.241 0.759 34 H 0.147 0.853 35 H 0.120 0.880 36 H 0.152 0.848 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.404 -4.981 -6.798 11.218 hybrid contribution -0.096 1.235 -0.330 1.282 sum -7.500 -3.746 -7.129 11.005 Atomic orbital electron populations 1.23829 0.96002 1.01683 1.02327 1.22995 0.96013 0.98714 0.98840 1.20822 0.98282 0.95307 0.98966 1.21256 0.97575 0.96457 0.98298 1.21667 0.98333 1.00325 0.97641 1.20665 0.81229 0.82965 0.86776 1.90607 1.68503 1.35332 1.47445 1.42967 1.40228 1.20896 1.23979 1.17835 1.02746 0.94291 0.92308 1.20826 0.96191 0.97585 0.96048 1.20203 1.07383 0.94817 1.01252 1.20780 0.97873 0.95693 0.89854 1.98253 1.68898 1.98996 1.43532 1.21096 1.02395 0.96089 0.96585 1.17270 0.91796 0.90717 0.90013 1.19344 1.06477 0.92264 1.31200 0.90175 1.25907 0.94106 1.01232 0.93094 1.69795 1.07722 1.30368 1.33489 0.86200 0.80296 0.80883 0.79035 1.18422 1.19604 1.19872 0.88673 0.88732 0.87412 0.91483 0.90950 0.91093 0.91078 0.89073 0.89204 0.75918 0.85349 0.88001 0.84757 0.90547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.75 14.32 29.01 0.42 -1.33 16 2 C -0.15 -1.38 9.52 -36.03 -0.34 -1.72 16 3 C -0.10 -0.90 5.66 -27.88 -0.16 -1.06 16 4 C -0.10 -1.15 4.49 -26.73 -0.12 -1.27 16 5 C -0.14 -1.70 5.70 -27.89 -0.16 -1.85 16 6 C 0.50 8.74 7.70 -10.99 -0.08 8.65 16 7 O -0.54 -11.33 13.04 5.55 0.07 -11.26 16 8 N -0.64 -12.21 5.03 -9.48 -0.05 -12.26 16 9 C 0.02 0.52 6.44 -83.18 -0.54 -0.01 16 10 C -0.09 -2.01 8.74 -39.46 -0.34 -2.35 16 11 C -0.22 -4.97 9.82 -39.32 -0.39 -5.36 16 12 C -0.02 -0.36 6.31 -39.55 -0.25 -0.61 16 13 Cl -0.13 -2.60 28.94 -51.86 -1.50 -4.10 16 14 C -0.14 -3.54 8.42 -38.89 -0.33 -3.87 16 15 C 0.11 2.63 5.57 -106.66 -0.59 2.04 16 16 C -0.46 -10.99 8.35 -37.87 -0.32 -11.30 16 17 H 0.08 1.77 7.26 -52.48 -0.38 1.39 16 18 C 0.08 1.73 5.23 -17.32 -0.09 1.64 16 19 N -0.79 -19.08 10.85 55.55 0.60 -18.47 16 20 Si 0.91 17.21 29.58 -169.99 -5.03 12.18 16 21 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 22 H -0.27 -5.16 7.11 56.52 0.40 -4.75 16 23 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 24 H 0.09 0.77 7.84 -52.49 -0.41 0.36 16 25 H 0.09 0.72 8.06 -52.49 -0.42 0.29 16 26 H 0.11 0.95 8.06 -52.49 -0.42 0.53 16 27 H 0.07 0.59 7.79 -51.93 -0.40 0.18 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 30 H 0.07 0.95 8.10 -51.93 -0.42 0.53 16 31 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.41 6.85 7.72 -40.82 -0.32 6.54 16 34 H 0.13 2.95 5.72 -52.49 -0.30 2.65 16 35 H 0.10 2.15 8.06 -52.49 -0.42 1.73 16 36 H 0.13 3.51 6.20 -52.49 -0.33 3.18 16 37 H 0.28 6.27 8.30 -40.82 -0.34 5.93 16 LS Contribution 330.64 15.07 4.98 4.98 Total: -1.00 -27.37 330.64 -8.86 -36.23 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: -4.65 Total: 11.11 kcal Atomic # 6 Polarization: -15.12 SS G_CDS: -3.29 Total: -18.41 kcal Atomic # 7 Polarization: -31.29 SS G_CDS: 0.56 Total: -30.74 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: 0.07 Total: -11.26 kcal Atomic # 14 Polarization: 17.21 SS G_CDS: -5.03 Total: 12.18 kcal Atomic # 17 Polarization: -2.60 SS G_CDS: -1.50 Total: -4.10 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -27.37 -8.86 -36.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000410974875.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.340 kcal (2) G-P(sol) polarization free energy of solvation -27.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds