Wall clock time and date at job start Tue Mar 31 2020 07:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50701 * 120.00219 * 2 1 4 4 C 1.52997 * 109.47155 * 125.00040 * 3 2 1 5 5 C 1.52999 * 109.47265 * 180.02562 * 4 3 2 6 6 C 1.50695 * 109.47373 * 180.02562 * 5 4 3 7 7 O 1.21286 * 120.00081 * 359.97438 * 6 5 4 8 8 N 1.34775 * 120.00291 * 179.97438 * 6 5 4 9 9 C 1.39144 * 120.00265 * 175.54350 * 8 6 5 10 10 C 1.38612 * 120.20717 * 28.68492 * 9 8 6 11 11 C 1.38195 * 120.16896 * 179.97438 * 10 9 8 12 12 C 1.38997 * 120.60322 * 0.02562 * 11 10 9 13 13 Cl 1.73604 * 119.78676 * 180.02562 * 12 11 10 14 14 C 1.37548 * 120.42375 * 359.73651 * 12 11 10 15 15 C 1.40739 * 119.80588 * 0.49408 * 14 12 11 16 16 C 1.41069 * 120.29122 * 179.78738 * 15 14 12 17 17 H 1.08005 * 120.00276 * 207.50917 * 16 15 14 18 18 C 1.39956 * 120.00071 * 27.77859 * 16 15 14 19 19 N 1.30861 * 119.99646 * 12.24473 * 18 16 15 20 20 Si 1.86793 * 120.00130 * 192.24951 * 18 16 15 21 21 H 1.48497 * 109.47345 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47482 * 120.00060 * 20 18 16 23 23 H 1.48505 * 109.47115 * 239.99950 * 20 18 16 24 24 H 1.08000 * 120.00030 * 0.02562 * 1 2 3 25 25 H 1.08000 * 120.00088 * 179.97438 * 1 2 3 26 26 H 1.08001 * 119.99684 * 180.02562 * 2 1 3 27 27 H 1.08997 * 109.47078 * 4.99786 * 3 2 1 28 28 H 1.09005 * 109.47117 * 244.99966 * 3 2 1 29 29 H 1.08997 * 109.47335 * 59.99903 * 4 3 2 30 30 H 1.09005 * 109.47047 * 299.99968 * 4 3 2 31 31 H 1.08997 * 109.47121 * 59.99652 * 5 4 3 32 32 H 1.09005 * 109.46965 * 299.99899 * 5 4 3 33 33 H 0.97003 * 119.99747 * 355.55508 * 8 6 5 34 34 H 1.07998 * 119.91561 * 359.97438 * 10 9 8 35 35 H 1.07996 * 119.69394 * 180.02562 * 11 10 9 36 36 H 1.07996 * 120.09359 * 180.25648 * 14 12 11 37 37 H 0.96999 * 119.99919 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 6 3.7997 2.6583 1.1820 6 6 4.7571 2.6856 2.3454 7 8 4.8212 1.7385 3.1004 8 7 5.5421 3.7624 2.5471 9 6 6.3582 3.8275 3.6722 10 6 6.8406 2.6646 4.2521 11 6 7.6516 2.7303 5.3692 12 6 7.9929 3.9578 5.9247 13 17 9.0135 4.0156 7.3278 14 6 7.5319 5.1273 5.3664 15 6 6.7009 5.0807 4.2315 16 6 6.2186 6.2737 3.6532 17 1 5.2844 6.2720 3.1112 18 6 6.9536 7.4583 3.7770 19 7 8.1871 7.4205 4.2121 20 14 6.1736 9.0933 3.3213 21 1 4.7806 8.8657 2.8598 22 1 6.1626 9.9847 4.5090 23 1 6.9577 9.7293 2.2323 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3587 2.1316 0.0895 28 1 2.6214 1.4026 -0.9314 29 1 3.7400 0.5065 1.0921 30 1 2.4773 1.2355 2.1130 31 1 3.0945 3.4845 1.2717 32 1 4.3575 2.7562 0.2506 33 1 5.5380 4.4921 1.9080 34 1 6.5821 1.7048 3.8298 35 1 8.0235 1.8194 5.8145 36 1 7.8037 6.0783 5.7999 37 1 8.6967 8.2414 4.2976 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000410974875.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:00 Heat of formation + Delta-G solvation = -38.809654 kcal Electronic energy + Delta-G solvation = -20217.900365 eV Core-core repulsion = 16984.792989 eV Total energy + Delta-G solvation = -3233.107376 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.25019 -39.19060 -37.24715 -36.80483 -35.55885 -35.24304 -33.28197 -31.63154 -30.27229 -28.07220 -27.05864 -23.98582 -23.11466 -22.08756 -21.01184 -20.55431 -19.33488 -18.36056 -17.72712 -17.11423 -16.85083 -16.32637 -16.01480 -15.36495 -15.29287 -14.71014 -14.51708 -14.33277 -14.30107 -13.98697 -13.41833 -13.24706 -13.18952 -12.83732 -12.66116 -12.53100 -12.39036 -12.22938 -12.13209 -11.92211 -11.72652 -11.57810 -11.41508 -11.09578 -10.82761 -10.40676 -10.15013 -9.44511 -8.81899 -8.51259 -6.37701 0.65570 0.93986 1.44394 1.45349 1.50637 1.54766 1.58300 1.83371 2.21276 2.49316 2.70076 3.58165 3.85598 3.91446 4.12420 4.36111 4.41175 4.48435 4.56421 4.69850 4.75372 4.79897 4.96248 5.00322 5.02683 5.11470 5.24741 5.26760 5.27658 5.45211 5.53767 5.72142 5.81803 5.88708 5.94770 6.00581 6.13941 6.48569 6.72183 6.84685 6.95034 7.43910 8.32285 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.013315 B = 0.004176 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.418150 B = 6703.861064 C = 8617.616366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.165 4.165 3 C -0.089 4.089 4 C -0.093 4.093 5 C -0.127 4.127 6 C 0.492 3.508 7 O -0.577 6.577 8 N -0.639 5.639 9 C 0.021 3.979 10 C -0.098 4.098 11 C -0.222 4.222 12 C -0.025 4.025 13 Cl -0.105 7.105 14 C -0.164 4.164 15 C 0.081 3.919 16 C -0.479 4.479 17 H 0.093 0.907 18 C 0.036 3.964 19 N -0.822 5.822 20 Si 0.984 3.016 21 H -0.250 1.250 22 H -0.274 1.274 23 H -0.267 1.267 24 H 0.102 0.898 25 H 0.103 0.897 26 H 0.107 0.893 27 H 0.077 0.923 28 H 0.087 0.913 29 H 0.057 0.943 30 H 0.049 0.951 31 H 0.115 0.885 32 H 0.121 0.879 33 H 0.416 0.584 34 H 0.129 0.871 35 H 0.117 0.883 36 H 0.119 0.881 37 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.155 -3.751 -9.157 13.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.183 4.183 3 C -0.126 4.126 4 C -0.132 4.132 5 C -0.167 4.167 6 C 0.283 3.717 7 O -0.457 6.457 8 N -0.282 5.282 9 C -0.074 4.074 10 C -0.119 4.119 11 C -0.242 4.242 12 C -0.052 4.052 13 Cl -0.076 7.076 14 C -0.185 4.185 15 C 0.077 3.923 16 C -0.508 4.508 17 H 0.111 0.889 18 C -0.179 4.179 19 N -0.447 5.447 20 Si 0.805 3.195 21 H -0.173 1.173 22 H -0.199 1.199 23 H -0.192 1.192 24 H 0.120 0.880 25 H 0.121 0.879 26 H 0.125 0.875 27 H 0.095 0.905 28 H 0.105 0.895 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.133 0.867 32 H 0.139 0.861 33 H 0.253 0.747 34 H 0.147 0.853 35 H 0.135 0.865 36 H 0.137 0.863 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.859 -4.256 -8.511 13.002 hybrid contribution 0.364 0.926 0.230 1.021 sum -8.495 -3.330 -8.281 12.322 Atomic orbital electron populations 1.24012 0.95914 1.02508 1.01156 1.23094 0.96440 0.98898 0.99913 1.20759 0.97919 0.95636 0.98254 1.21198 0.97568 0.95809 0.98584 1.21721 0.97565 1.01320 0.96088 1.21694 0.80961 0.81550 0.87535 1.90586 1.69474 1.36540 1.49132 1.43034 1.40067 1.21931 1.23122 1.17978 1.02570 0.93685 0.93206 1.20971 0.96619 0.97785 0.96517 1.20420 1.07282 0.95232 1.01315 1.20867 0.98136 0.95500 0.90654 1.98243 1.68175 1.98980 1.42212 1.21064 1.04018 0.95885 0.97567 1.17608 0.92369 0.91920 0.90415 1.19634 1.07044 0.92551 1.31615 0.88915 1.26765 0.94205 1.04443 0.92526 1.69869 1.09083 1.31601 1.34158 0.85104 0.79741 0.76066 0.78551 1.17334 1.19904 1.19198 0.87979 0.87887 0.87473 0.90476 0.89463 0.92398 0.93179 0.86720 0.86134 0.74668 0.85308 0.86478 0.86347 0.90010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.06 14.32 67.78 0.97 -2.09 16 2 C -0.17 -2.81 9.52 25.65 0.24 -2.56 16 3 C -0.09 -1.42 5.66 29.85 0.17 -1.25 16 4 C -0.09 -2.05 4.49 30.59 0.14 -1.91 16 5 C -0.13 -2.77 5.70 29.85 0.17 -2.60 16 6 C 0.49 16.85 7.70 87.66 0.67 17.52 16 7 O -0.58 -24.23 13.04 -3.05 -0.04 -24.27 16 8 N -0.64 -23.92 5.03 -302.31 -1.52 -25.44 16 9 C 0.02 0.98 6.44 38.86 0.25 1.23 16 10 C -0.10 -4.64 8.74 22.35 0.20 -4.45 16 11 C -0.22 -10.33 9.82 22.44 0.22 -10.11 16 12 C -0.02 -1.18 6.31 22.29 0.14 -1.04 16 13 Cl -0.10 -4.35 28.94 -2.72 -0.08 -4.43 16 14 C -0.16 -8.47 8.42 22.72 0.19 -8.28 16 15 C 0.08 4.08 5.57 -21.18 -0.12 3.96 16 16 C -0.48 -22.62 8.35 23.38 0.20 -22.43 16 17 H 0.09 3.99 7.26 -2.91 -0.02 3.97 16 18 C 0.04 1.66 5.23 85.25 0.45 2.10 16 19 N -0.82 -40.09 10.85 21.83 0.24 -39.86 16 20 Si 0.98 34.38 29.58 68.60 2.03 36.41 16 21 H -0.25 -8.25 7.11 99.48 0.71 -7.54 16 22 H -0.27 -9.63 7.11 99.48 0.71 -8.92 16 23 H -0.27 -9.01 7.11 99.48 0.71 -8.30 16 24 H 0.10 1.41 7.84 -2.91 -0.02 1.38 16 25 H 0.10 1.37 8.06 -2.91 -0.02 1.35 16 26 H 0.11 1.78 8.06 -2.91 -0.02 1.76 16 27 H 0.08 1.10 7.79 -2.39 -0.02 1.08 16 28 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 29 H 0.06 1.41 8.10 -2.39 -0.02 1.39 16 30 H 0.05 1.30 8.10 -2.38 -0.02 1.28 16 31 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.12 1.96 8.14 -2.38 -0.02 1.94 16 33 H 0.42 13.48 7.72 -92.71 -0.72 12.76 16 34 H 0.13 6.02 5.72 -2.91 -0.02 6.00 16 35 H 0.12 4.95 8.06 -2.91 -0.02 4.92 16 36 H 0.12 6.39 6.20 -2.91 -0.02 6.37 16 37 H 0.29 12.86 8.30 -92.71 -0.77 12.09 16 Total: -1.00 -59.70 330.64 4.89 -54.81 By element: Atomic # 1 Polarization: 34.31 SS G_CDS: 0.37 Total: 34.68 kcal Atomic # 6 Polarization: -35.79 SS G_CDS: 3.89 Total: -31.91 kcal Atomic # 7 Polarization: -64.02 SS G_CDS: -1.28 Total: -65.30 kcal Atomic # 8 Polarization: -24.23 SS G_CDS: -0.04 Total: -24.27 kcal Atomic # 14 Polarization: 34.38 SS G_CDS: 2.03 Total: 36.41 kcal Atomic # 17 Polarization: -4.35 SS G_CDS: -0.08 Total: -4.43 kcal Total: -59.70 4.89 -54.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000410974875.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.002 kcal (2) G-P(sol) polarization free energy of solvation -59.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds