Wall clock time and date at job start Tue Mar 31 2020 07:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53011 * 109.46991 * 2 1 4 4 C 1.50697 * 115.55726 * 280.12815 * 3 2 1 5 5 O 1.21282 * 120.00145 * 138.74705 * 4 3 2 6 6 N 1.34780 * 120.00107 * 318.74320 * 4 3 2 7 7 C 1.39270 * 119.99914 * 172.84982 * 6 4 3 8 8 C 1.39476 * 119.83478 * 26.99062 * 7 6 4 9 9 C 1.36376 * 120.17527 * 179.97438 * 8 7 6 10 10 C 1.40888 * 119.85016 * 359.97438 * 9 8 7 11 11 C 1.41152 * 120.15916 * 179.97438 * 10 9 8 12 12 H 1.08007 * 119.99710 * 18.51823 * 11 10 9 13 13 C 1.39894 * 120.00321 * 198.51427 * 11 10 9 14 14 N 1.30874 * 120.00095 * 21.64134 * 13 11 10 15 15 Si 1.86797 * 120.00164 * 201.63265 * 13 11 10 16 16 H 1.48505 * 109.47158 * 90.00366 * 15 13 11 17 17 H 1.48495 * 109.47577 * 210.00407 * 15 13 11 18 18 H 1.48498 * 109.47389 * 330.00543 * 15 13 11 19 19 C 1.40840 * 119.68667 * 0.02562 * 10 9 8 20 20 C 1.36475 * 119.81504 * 359.71471 * 19 10 9 21 21 Cl 1.73599 * 119.92825 * 180.29643 * 20 19 10 22 22 C 1.52997 * 117.50019 * 65.81748 * 3 2 1 23 23 C 1.53001 * 60.03014 * 107.50101 * 22 3 2 24 24 H 1.08993 * 109.47218 * 182.94444 * 1 2 3 25 25 H 1.08993 * 109.47263 * 302.95338 * 1 2 3 26 26 H 1.09005 * 109.46947 * 62.94758 * 1 2 3 27 27 H 1.08993 * 109.47419 * 239.99402 * 2 1 3 28 28 H 1.09001 * 109.46957 * 119.99481 * 2 1 3 29 29 H 0.96994 * 120.00188 * 352.86440 * 6 4 3 30 30 H 1.07995 * 119.91159 * 0.02562 * 8 7 6 31 31 H 1.07997 * 120.07179 * 180.02562 * 9 8 7 32 32 H 0.96997 * 120.00124 * 180.02562 * 14 13 11 33 33 H 1.08003 * 120.09119 * 180.02562 * 19 10 9 34 34 H 1.09000 * 117.49908 * 0.02562 * 22 3 2 35 35 H 1.08997 * 117.49855 * 215.00331 * 22 3 2 36 36 H 1.09004 * 117.49927 * 107.48050 * 23 22 3 37 37 H 1.09000 * 117.49944 * 252.47006 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0313 2.1352 -1.3383 5 8 1.6789 3.2929 -1.4198 6 7 2.4152 1.4683 -2.4449 7 6 2.2671 2.0561 -3.6987 8 6 2.2748 3.4457 -3.8189 9 6 2.1309 4.0286 -5.0434 10 6 1.9747 3.2238 -6.1892 11 6 1.8247 3.8203 -7.4596 12 1 2.1210 4.8476 -7.6122 13 6 1.2923 3.0808 -8.5212 14 7 0.5566 2.0257 -8.2796 15 14 1.6312 3.5995 -10.2834 16 1 2.8678 2.9339 -10.7662 17 1 0.4878 3.2041 -11.1444 18 1 1.8076 5.0729 -10.3406 19 6 1.9678 1.8213 -6.0608 20 6 2.1182 1.2518 -4.8297 21 17 2.1179 -0.4767 -4.6691 22 6 1.7513 2.2940 1.2380 23 6 3.1717 1.7925 0.9695 24 1 -0.3633 -1.0262 0.0528 25 1 -0.3633 0.5590 0.8623 26 1 -0.3633 0.4674 -0.9153 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 2.7943 0.5788 -2.3680 30 1 2.3959 4.0616 -2.9401 31 1 2.1375 5.1047 -5.1346 32 1 0.1878 1.5128 -9.0156 33 1 1.8489 1.1981 -6.9348 34 1 1.1985 1.8263 2.0527 35 1 1.5548 3.3550 1.0845 36 1 3.9095 2.5237 0.6389 37 1 3.5531 0.9954 1.6076 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411019071.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:42 Heat of formation + Delta-G solvation = -7.647125 kcal Electronic energy + Delta-G solvation = -20918.488960 eV Core-core repulsion = 17686.732892 eV Total energy + Delta-G solvation = -3231.756068 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.18674 -38.01285 -36.55651 -35.53777 -34.50949 -33.13854 -31.75599 -29.42217 -29.15312 -25.87758 -24.22920 -22.77350 -22.30910 -21.50096 -20.61223 -18.80799 -17.61385 -17.03722 -16.30146 -15.44888 -15.10732 -14.92099 -14.35228 -14.02140 -13.75386 -13.42442 -13.28087 -12.95494 -12.54424 -12.39778 -12.27926 -11.88274 -11.63545 -11.47824 -11.30271 -11.18078 -11.06186 -10.96403 -10.62633 -10.42054 -10.39285 -10.04624 -10.00623 -9.82594 -9.55657 -9.05031 -8.83182 -7.53935 -7.16720 -6.88876 -4.42105 2.36459 2.85650 2.89778 3.01356 3.04520 3.15674 3.19409 3.67004 3.82693 3.84626 4.43838 4.56370 4.77359 4.86094 5.02186 5.31871 5.42938 5.48574 5.53422 5.56385 5.82153 5.89525 5.94678 6.05629 6.13431 6.26577 6.29138 6.57610 6.68983 6.85999 7.04568 7.08699 7.30739 7.58433 7.68460 7.87198 8.08568 8.20345 8.38450 8.68150 8.71802 8.83665 9.98624 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.026445 B = 0.004247 C = 0.003872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.540610 B = 6590.577218 C = 7229.537173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.083 4.083 3 C -0.159 4.159 4 C 0.537 3.463 5 O -0.532 6.532 6 N -0.640 5.640 7 C -0.006 4.006 8 C -0.077 4.077 9 C -0.219 4.219 10 C 0.108 3.892 11 C -0.446 4.446 12 H 0.084 0.916 13 C 0.074 3.926 14 N -0.777 5.777 15 Si 0.911 3.089 16 H -0.265 1.265 17 H -0.276 1.276 18 H -0.260 1.260 19 C -0.156 4.156 20 C -0.015 4.015 21 Cl -0.122 7.122 22 C -0.143 4.143 23 C -0.156 4.156 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.398 0.602 30 H 0.132 0.868 31 H 0.100 0.900 32 H 0.285 0.715 33 H 0.139 0.861 34 H 0.099 0.901 35 H 0.107 0.893 36 H 0.097 0.903 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.752 -5.196 11.279 12.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.120 4.120 3 C -0.162 4.162 4 C 0.324 3.676 5 O -0.410 6.410 6 N -0.282 5.282 7 C -0.099 4.099 8 C -0.097 4.097 9 C -0.239 4.239 10 C 0.105 3.895 11 C -0.475 4.475 12 H 0.102 0.898 13 C -0.146 4.146 14 N -0.401 5.401 15 Si 0.735 3.265 16 H -0.190 1.190 17 H -0.202 1.202 18 H -0.184 1.184 19 C -0.177 4.177 20 C -0.043 4.043 21 Cl -0.094 7.094 22 C -0.180 4.180 23 C -0.193 4.193 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.233 0.767 30 H 0.150 0.850 31 H 0.119 0.881 32 H 0.096 0.904 33 H 0.156 0.844 34 H 0.118 0.882 35 H 0.125 0.875 36 H 0.116 0.884 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 2.318 -4.729 11.124 12.307 hybrid contribution 0.175 -0.584 -0.866 1.059 sum 2.493 -5.313 10.257 11.818 Atomic orbital electron populations 1.21736 0.94979 1.01505 1.02552 1.21060 0.96584 0.91954 1.02447 1.21577 1.06724 0.97380 0.90540 1.19365 0.77420 0.86431 0.84344 1.90585 1.48032 1.16687 1.85672 1.42832 1.60734 1.19787 1.04827 1.16899 1.19187 0.91701 0.82155 1.20768 0.98824 0.91867 0.98217 1.20735 1.12865 0.98296 0.91974 1.17558 0.88592 0.90690 0.92665 1.19623 1.35171 0.99428 0.93244 0.89767 1.26021 0.92251 0.94114 1.02184 1.69840 1.20793 1.14440 1.35007 0.86252 0.79059 0.80418 0.80767 1.19039 1.20158 1.18387 1.20994 1.06412 0.95627 0.94627 1.20288 1.08627 0.80282 0.95082 1.98244 1.97557 1.15425 1.98177 1.22945 0.97913 1.00698 0.96435 1.23085 0.91961 1.03506 1.00759 0.92548 0.92529 0.92295 0.91238 0.91209 0.76678 0.85032 0.88135 0.90406 0.84373 0.88227 0.87508 0.88407 0.88062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.83 37.16 0.37 -1.37 16 2 C -0.08 -0.93 5.80 -26.73 -0.16 -1.08 16 3 C -0.16 -2.10 1.95 -155.62 -0.30 -2.40 16 4 C 0.54 9.69 7.20 -10.98 -0.08 9.62 16 5 O -0.53 -11.43 13.17 5.56 0.07 -11.36 16 6 N -0.64 -11.92 4.97 -9.71 -0.05 -11.97 16 7 C -0.01 -0.13 6.46 -83.52 -0.54 -0.67 16 8 C -0.08 -1.83 8.73 -39.79 -0.35 -2.18 16 9 C -0.22 -5.40 9.74 -39.25 -0.38 -5.78 16 10 C 0.11 2.82 5.63 -106.80 -0.60 2.22 16 11 C -0.45 -11.40 9.04 -37.86 -0.34 -11.74 16 12 H 0.08 2.06 7.93 -52.48 -0.42 1.64 16 13 C 0.07 1.79 5.11 -17.34 -0.09 1.70 16 14 N -0.78 -19.30 10.79 55.54 0.60 -18.70 16 15 Si 0.91 17.89 29.61 -169.99 -5.03 12.86 16 16 H -0.27 -5.17 7.11 56.52 0.40 -4.76 16 17 H -0.28 -5.32 7.11 56.52 0.40 -4.92 16 18 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 19 C -0.16 -3.96 8.47 -39.23 -0.33 -4.30 16 20 C -0.01 -0.34 6.30 -39.72 -0.25 -0.59 16 21 Cl -0.12 -2.36 27.77 -51.86 -1.44 -3.80 16 22 C -0.14 -1.65 9.29 -26.73 -0.25 -1.90 16 23 C -0.16 -1.68 9.88 -26.69 -0.26 -1.95 16 24 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.60 7.61 -51.93 -0.40 0.20 16 26 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.07 0.80 6.88 -51.93 -0.36 0.44 16 28 H 0.07 0.62 7.95 -51.93 -0.41 0.21 16 29 H 0.40 6.47 6.63 -40.82 -0.27 6.20 16 30 H 0.13 3.10 5.49 -52.49 -0.29 2.82 16 31 H 0.10 2.33 8.06 -52.49 -0.42 1.91 16 32 H 0.28 6.41 8.30 -40.82 -0.34 6.07 16 33 H 0.14 3.61 5.85 -52.48 -0.31 3.31 16 34 H 0.10 0.93 7.97 -51.93 -0.41 0.52 16 35 H 0.11 1.41 7.69 -51.93 -0.40 1.01 16 36 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.10 0.85 8.09 -51.93 -0.42 0.43 16 LS Contribution 323.93 15.07 4.88 4.88 Total: -1.00 -27.81 323.93 -9.04 -36.85 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -4.51 Total: 11.67 kcal Atomic # 6 Polarization: -16.85 SS G_CDS: -3.57 Total: -20.42 kcal Atomic # 7 Polarization: -31.22 SS G_CDS: 0.55 Total: -30.67 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: 0.07 Total: -11.36 kcal Atomic # 14 Polarization: 17.89 SS G_CDS: -5.03 Total: 12.86 kcal Atomic # 17 Polarization: -2.36 SS G_CDS: -1.44 Total: -3.80 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -27.81 -9.04 -36.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411019071.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.201 kcal (2) G-P(sol) polarization free energy of solvation -27.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds