Wall clock time and date at job start Tue Mar 31 2020 07:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53011 * 109.46991 * 2 1 4 4 C 1.50697 * 115.55726 * 280.12815 * 3 2 1 5 5 O 1.21282 * 120.00145 * 138.74705 * 4 3 2 6 6 N 1.34780 * 120.00107 * 318.74320 * 4 3 2 7 7 C 1.39270 * 119.99914 * 172.84982 * 6 4 3 8 8 C 1.39476 * 119.83478 * 26.99062 * 7 6 4 9 9 C 1.36376 * 120.17527 * 179.97438 * 8 7 6 10 10 C 1.40888 * 119.85016 * 359.97438 * 9 8 7 11 11 C 1.41152 * 120.15916 * 179.97438 * 10 9 8 12 12 H 1.08007 * 119.99710 * 18.51823 * 11 10 9 13 13 C 1.39894 * 120.00321 * 198.51427 * 11 10 9 14 14 N 1.30874 * 120.00095 * 21.64134 * 13 11 10 15 15 Si 1.86797 * 120.00164 * 201.63265 * 13 11 10 16 16 H 1.48505 * 109.47158 * 90.00366 * 15 13 11 17 17 H 1.48495 * 109.47577 * 210.00407 * 15 13 11 18 18 H 1.48498 * 109.47389 * 330.00543 * 15 13 11 19 19 C 1.40840 * 119.68667 * 0.02562 * 10 9 8 20 20 C 1.36475 * 119.81504 * 359.71471 * 19 10 9 21 21 Cl 1.73599 * 119.92825 * 180.29643 * 20 19 10 22 22 C 1.52997 * 117.50019 * 65.81748 * 3 2 1 23 23 C 1.53001 * 60.03014 * 107.50101 * 22 3 2 24 24 H 1.08993 * 109.47218 * 182.94444 * 1 2 3 25 25 H 1.08993 * 109.47263 * 302.95338 * 1 2 3 26 26 H 1.09005 * 109.46947 * 62.94758 * 1 2 3 27 27 H 1.08993 * 109.47419 * 239.99402 * 2 1 3 28 28 H 1.09001 * 109.46957 * 119.99481 * 2 1 3 29 29 H 0.96994 * 120.00188 * 352.86440 * 6 4 3 30 30 H 1.07995 * 119.91159 * 0.02562 * 8 7 6 31 31 H 1.07997 * 120.07179 * 180.02562 * 9 8 7 32 32 H 0.96997 * 120.00124 * 180.02562 * 14 13 11 33 33 H 1.08003 * 120.09119 * 180.02562 * 19 10 9 34 34 H 1.09000 * 117.49908 * 0.02562 * 22 3 2 35 35 H 1.08997 * 117.49855 * 215.00331 * 22 3 2 36 36 H 1.09004 * 117.49927 * 107.48050 * 23 22 3 37 37 H 1.09000 * 117.49944 * 252.47006 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0313 2.1352 -1.3383 5 8 1.6789 3.2929 -1.4198 6 7 2.4152 1.4683 -2.4449 7 6 2.2671 2.0561 -3.6987 8 6 2.2748 3.4457 -3.8189 9 6 2.1309 4.0286 -5.0434 10 6 1.9747 3.2238 -6.1892 11 6 1.8247 3.8203 -7.4596 12 1 2.1210 4.8476 -7.6122 13 6 1.2923 3.0808 -8.5212 14 7 0.5566 2.0257 -8.2796 15 14 1.6312 3.5995 -10.2834 16 1 2.8678 2.9339 -10.7662 17 1 0.4878 3.2041 -11.1444 18 1 1.8076 5.0729 -10.3406 19 6 1.9678 1.8213 -6.0608 20 6 2.1182 1.2518 -4.8297 21 17 2.1179 -0.4767 -4.6691 22 6 1.7513 2.2940 1.2380 23 6 3.1717 1.7925 0.9695 24 1 -0.3633 -1.0262 0.0528 25 1 -0.3633 0.5590 0.8623 26 1 -0.3633 0.4674 -0.9153 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 2.7943 0.5788 -2.3680 30 1 2.3959 4.0616 -2.9401 31 1 2.1375 5.1047 -5.1346 32 1 0.1878 1.5128 -9.0156 33 1 1.8489 1.1981 -6.9348 34 1 1.1985 1.8263 2.0527 35 1 1.5548 3.3550 1.0845 36 1 3.9095 2.5237 0.6389 37 1 3.5531 0.9954 1.6076 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411019071.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:41 Heat of formation + Delta-G solvation = -21.479154 kcal Electronic energy + Delta-G solvation = -20919.088762 eV Core-core repulsion = 17686.732892 eV Total energy + Delta-G solvation = -3232.355870 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.61941 -39.61773 -37.88666 -37.27603 -36.20357 -34.88036 -32.67507 -31.29236 -30.98253 -27.51299 -25.49826 -24.03832 -23.48889 -23.04407 -22.33530 -20.24198 -19.42546 -18.46809 -17.77956 -17.21786 -16.44230 -16.23961 -15.98834 -15.40921 -15.10526 -14.75979 -14.74656 -14.43791 -14.11688 -14.06989 -13.61615 -13.36455 -12.99501 -12.94308 -12.73218 -12.48064 -12.41255 -12.31425 -12.01320 -11.99018 -11.76258 -11.60615 -11.35353 -11.31758 -10.97812 -10.81532 -10.42393 -9.42353 -9.00028 -8.69506 -6.33985 0.60726 0.94704 1.36003 1.38753 1.42857 1.53322 1.66999 2.17782 2.24870 2.61034 2.83727 3.56560 3.61947 3.75156 3.85283 4.01611 4.36497 4.43857 4.57135 4.60840 4.70204 4.75214 4.90156 4.96754 4.99788 5.04129 5.08442 5.18330 5.21533 5.24304 5.25944 5.37951 5.42161 5.71049 5.82460 5.99666 6.20786 6.46967 6.63910 6.81605 6.83019 7.29695 8.20587 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.026445 B = 0.004247 C = 0.003872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.540610 B = 6590.577218 C = 7229.537173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.078 4.078 3 C -0.174 4.174 4 C 0.533 3.467 5 O -0.572 6.572 6 N -0.636 5.636 7 C 0.001 3.999 8 C -0.087 4.087 9 C -0.233 4.233 10 C 0.081 3.919 11 C -0.480 4.480 12 H 0.084 0.916 13 C 0.038 3.962 14 N -0.807 5.807 15 Si 0.986 3.014 16 H -0.260 1.260 17 H -0.266 1.266 18 H -0.257 1.257 19 C -0.175 4.175 20 C -0.021 4.021 21 Cl -0.087 7.087 22 C -0.140 4.140 23 C -0.134 4.134 24 H 0.073 0.927 25 H 0.066 0.934 26 H 0.022 0.978 27 H 0.064 0.936 28 H 0.106 0.894 29 H 0.411 0.589 30 H 0.132 0.868 31 H 0.104 0.896 32 H 0.294 0.706 33 H 0.128 0.872 34 H 0.130 0.870 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.294 -6.856 12.636 14.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.116 4.116 3 C -0.177 4.177 4 C 0.322 3.678 5 O -0.452 6.452 6 N -0.280 5.280 7 C -0.094 4.094 8 C -0.107 4.107 9 C -0.253 4.253 10 C 0.078 3.922 11 C -0.508 4.508 12 H 0.102 0.898 13 C -0.180 4.180 14 N -0.431 5.431 15 Si 0.806 3.194 16 H -0.185 1.185 17 H -0.191 1.191 18 H -0.181 1.181 19 C -0.196 4.196 20 C -0.049 4.049 21 Cl -0.059 7.059 22 C -0.177 4.177 23 C -0.171 4.171 24 H 0.092 0.908 25 H 0.085 0.915 26 H 0.041 0.959 27 H 0.082 0.918 28 H 0.125 0.875 29 H 0.248 0.752 30 H 0.149 0.851 31 H 0.122 0.878 32 H 0.105 0.895 33 H 0.145 0.855 34 H 0.148 0.852 35 H 0.102 0.898 36 H 0.105 0.895 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 2.868 -6.419 12.516 14.355 hybrid contribution -0.013 -0.119 -1.137 1.143 sum 2.855 -6.537 11.378 13.430 Atomic orbital electron populations 1.21753 0.95579 1.02372 1.01105 1.21109 0.95992 0.90481 1.03976 1.21553 1.09796 0.98462 0.87906 1.20335 0.75645 0.86041 0.85759 1.90558 1.49467 1.18735 1.86483 1.42840 1.61052 1.20318 1.03766 1.16992 1.17187 0.91415 0.83783 1.20877 0.99227 0.92784 0.97810 1.20880 1.13523 0.98624 0.92289 1.17871 0.89474 0.91455 0.93394 1.19867 1.36783 0.99982 0.94166 0.89817 1.26855 0.91240 0.93827 1.06067 1.69872 1.21195 1.15360 1.36710 0.85142 0.79139 0.80021 0.75130 1.18451 1.19066 1.18064 1.20950 1.07985 0.95451 0.95179 1.20325 1.07663 0.82408 0.94544 1.98239 1.97381 1.12199 1.98076 1.23042 0.99186 0.99434 0.96076 1.23246 0.91044 1.03772 0.99017 0.90804 0.91543 0.95900 0.91769 0.87528 0.75173 0.85078 0.87759 0.89519 0.85477 0.85189 0.89845 0.89477 0.84300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.14 9.83 71.98 0.71 -2.44 16 2 C -0.08 -1.49 5.80 30.60 0.18 -1.31 16 3 C -0.17 -4.21 1.95 -52.90 -0.10 -4.31 16 4 C 0.53 19.08 7.20 87.66 0.63 19.71 16 5 O -0.57 -25.15 13.17 -3.03 -0.04 -25.19 16 6 N -0.64 -23.55 4.97 -303.01 -1.51 -25.06 16 7 C 0.00 0.05 6.46 38.58 0.25 0.30 16 8 C -0.09 -4.29 8.73 22.13 0.19 -4.10 16 9 C -0.23 -12.05 9.74 22.48 0.22 -11.83 16 10 C 0.08 4.42 5.63 -21.28 -0.12 4.30 16 11 C -0.48 -25.38 9.04 23.39 0.21 -25.17 16 12 H 0.08 4.25 7.93 -2.91 -0.02 4.23 16 13 C 0.04 1.83 5.11 85.24 0.44 2.26 16 14 N -0.81 -40.81 10.79 21.82 0.24 -40.58 16 15 Si 0.99 36.75 29.61 68.60 2.03 38.79 16 16 H -0.26 -9.41 7.11 99.48 0.71 -8.70 16 17 H -0.27 -9.41 7.11 99.48 0.71 -8.70 16 18 H -0.26 -9.37 7.11 99.48 0.71 -8.66 16 19 C -0.18 -9.17 8.47 22.49 0.19 -8.98 16 20 C -0.02 -0.98 6.30 22.18 0.14 -0.84 16 21 Cl -0.09 -3.32 27.77 -2.72 -0.08 -3.39 16 22 C -0.14 -2.90 9.29 30.59 0.28 -2.61 16 23 C -0.13 -2.44 9.88 30.62 0.30 -2.13 16 24 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.07 1.23 7.61 -2.39 -0.02 1.21 16 26 H 0.02 0.62 8.14 -2.38 -0.02 0.60 16 27 H 0.06 1.29 6.88 -2.39 -0.02 1.28 16 28 H 0.11 1.31 7.95 -2.39 -0.02 1.29 16 29 H 0.41 12.88 6.63 -92.71 -0.62 12.26 16 30 H 0.13 6.44 5.49 -2.91 -0.02 6.42 16 31 H 0.10 5.11 8.06 -2.91 -0.02 5.09 16 32 H 0.29 13.31 8.30 -92.71 -0.77 12.54 16 33 H 0.13 6.86 5.85 -2.91 -0.02 6.85 16 34 H 0.13 1.90 7.97 -2.39 -0.02 1.88 16 35 H 0.08 2.15 7.69 -2.39 -0.02 2.13 16 36 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 37 H 0.14 1.55 8.09 -2.39 -0.02 1.53 16 Total: -1.00 -62.96 323.93 4.65 -58.30 By element: Atomic # 1 Polarization: 33.79 SS G_CDS: 0.49 Total: 34.27 kcal Atomic # 6 Polarization: -40.67 SS G_CDS: 3.52 Total: -37.15 kcal Atomic # 7 Polarization: -64.37 SS G_CDS: -1.27 Total: -65.64 kcal Atomic # 8 Polarization: -25.15 SS G_CDS: -0.04 Total: -25.19 kcal Atomic # 14 Polarization: 36.75 SS G_CDS: 2.03 Total: 38.79 kcal Atomic # 17 Polarization: -3.32 SS G_CDS: -0.08 Total: -3.39 kcal Total: -62.96 4.65 -58.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411019071.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.824 kcal (2) G-P(sol) polarization free energy of solvation -62.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds