Wall clock time and date at job start Tue Mar 31 2020 07:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50705 * 120.00429 * 2 1 4 4 C 1.53000 * 109.46802 * 0.02562 * 3 2 1 5 5 C 1.52998 * 109.47318 * 239.99906 * 3 2 1 6 6 C 1.50703 * 109.47043 * 119.99823 * 3 2 1 7 7 O 1.21280 * 119.99938 * 0.02562 * 6 3 2 8 8 N 1.34777 * 119.99558 * 180.27985 * 6 3 2 9 9 C 1.39271 * 119.99799 * 175.47694 * 8 6 3 10 10 C 1.39471 * 119.83629 * 34.72317 * 9 8 6 11 11 C 1.36371 * 120.17689 * 179.75983 * 10 9 8 12 12 C 1.40892 * 119.85149 * 0.51178 * 11 10 9 13 13 C 1.41145 * 120.16128 * 179.76176 * 12 11 10 14 14 H 1.08001 * 119.99814 * 34.74879 * 13 12 11 15 15 C 1.39900 * 120.00404 * 214.74837 * 13 12 11 16 16 N 1.30882 * 119.99534 * 355.59795 * 15 13 12 17 17 Si 1.86794 * 120.00422 * 175.60089 * 15 13 12 18 18 H 1.48506 * 109.46969 * 359.97438 * 17 15 13 19 19 H 1.48491 * 109.47566 * 120.00011 * 17 15 13 20 20 H 1.48510 * 109.47089 * 240.00249 * 17 15 13 21 21 C 1.40844 * 119.67931 * 359.74285 * 12 11 10 22 22 C 1.36477 * 119.82248 * 359.97438 * 21 12 11 23 23 Cl 1.73592 * 119.92943 * 179.97438 * 22 21 12 24 24 H 1.07994 * 120.00444 * 180.02562 * 1 2 3 25 25 H 1.08002 * 119.99768 * 0.02562 * 1 2 3 26 26 H 1.08005 * 120.00161 * 179.97438 * 2 1 3 27 27 H 1.09002 * 109.47189 * 180.02562 * 4 3 2 28 28 H 1.09000 * 109.46767 * 299.99888 * 4 3 2 29 29 H 1.08997 * 109.47560 * 59.99608 * 4 3 2 30 30 H 1.09004 * 109.46826 * 299.99886 * 5 3 2 31 31 H 1.09000 * 109.47184 * 59.99541 * 5 3 2 32 32 H 1.08997 * 109.47249 * 180.02562 * 5 3 2 33 33 H 0.96999 * 120.00473 * 355.47333 * 8 6 3 34 34 H 1.07999 * 119.91235 * 0.02562 * 10 9 8 35 35 H 1.07998 * 120.07941 * 180.22625 * 11 10 9 36 36 H 0.96996 * 119.99692 * 179.97438 * 16 15 13 37 37 H 1.08005 * 120.08994 * 180.02562 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 1.0693 2.4680 0.0006 5 6 2.9432 1.3861 -1.2492 6 6 2.9299 1.3849 1.2305 7 8 2.9353 0.4717 2.0286 8 7 3.6949 2.4733 1.4466 9 6 4.4228 2.5893 2.6282 10 6 4.9685 1.4513 3.2217 11 6 5.6866 1.5575 4.3762 12 6 5.8679 2.8196 4.9756 13 6 6.6057 2.9364 6.1732 14 1 7.4540 2.2917 6.3499 15 6 6.2384 3.8873 7.1313 16 7 5.2652 4.7260 6.8812 17 14 7.1367 3.9602 8.7674 18 1 8.1878 2.9116 8.8021 19 1 7.7643 5.2963 8.9286 20 1 6.1718 3.7299 9.8726 21 6 5.3097 3.9641 4.3739 22 6 4.5983 3.8433 3.2155 23 17 3.9085 5.2521 2.4718 24 1 -0.5400 -0.9352 0.0004 25 1 -0.5400 0.9353 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.6143 3.4120 0.0002 28 1 0.4424 2.4105 -0.8891 29 1 0.4430 2.4101 0.8908 30 1 3.6515 0.5575 -1.2491 31 1 2.3166 1.3283 -2.1392 32 1 3.4886 2.3298 -1.2490 33 1 3.7385 3.1758 0.7791 34 1 4.8255 0.4838 2.7635 35 1 6.1115 0.6757 4.8324 36 1 5.0102 5.3851 7.5456 37 1 5.4449 4.9349 4.8275 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411020456.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:04 Heat of formation + Delta-G solvation = -11.637695 kcal Electronic energy + Delta-G solvation = -20936.699353 eV Core-core repulsion = 17704.770241 eV Total energy + Delta-G solvation = -3231.929112 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.20558 -37.87052 -36.11831 -35.53030 -34.49321 -33.05007 -30.90218 -29.45212 -28.89379 -27.47993 -25.37813 -23.80123 -21.95193 -21.10789 -20.04111 -18.40434 -17.53939 -17.11691 -16.22918 -15.46479 -15.29508 -14.89632 -14.32965 -14.18172 -13.90652 -13.42474 -12.96300 -12.68208 -12.51517 -12.37485 -12.23370 -12.10239 -11.88163 -11.66885 -11.44594 -11.24649 -11.09130 -10.95629 -10.76392 -10.58665 -10.32146 -9.98291 -9.76948 -9.56226 -9.45203 -9.08312 -8.92335 -7.56386 -7.02224 -6.73281 -4.48051 2.26441 2.36275 2.82410 2.97968 3.05789 3.10706 3.14351 3.26309 3.75888 3.90730 4.54856 4.55825 4.77666 4.93151 5.13300 5.34748 5.43531 5.45740 5.58994 5.64324 5.70948 5.89319 6.02799 6.12931 6.19276 6.51016 6.60991 6.65424 6.75758 6.86927 7.00310 7.13886 7.31074 7.57041 7.65722 7.85945 8.07849 8.13366 8.42107 8.66979 8.77689 8.81342 10.17134 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.025612 B = 0.004188 C = 0.003866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.968480 B = 6683.488374 C = 7241.586179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.117 4.117 3 C -0.056 4.056 4 C -0.143 4.143 5 C -0.137 4.137 6 C 0.514 3.486 7 O -0.527 6.527 8 N -0.648 5.648 9 C 0.013 3.987 10 C -0.075 4.075 11 C -0.202 4.202 12 C 0.108 3.892 13 C -0.455 4.455 14 H 0.081 0.919 15 C 0.069 3.931 16 N -0.804 5.804 17 Si 0.918 3.082 18 H -0.261 1.261 19 H -0.273 1.273 20 H -0.273 1.273 21 C -0.136 4.136 22 C -0.022 4.022 23 Cl -0.120 7.120 24 H 0.098 0.902 25 H 0.102 0.898 26 H 0.113 0.887 27 H 0.063 0.937 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.397 0.603 34 H 0.118 0.882 35 H 0.103 0.897 36 H 0.281 0.719 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.077 -1.559 -12.040 13.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.135 4.135 3 C -0.059 4.059 4 C -0.200 4.200 5 C -0.194 4.194 6 C 0.301 3.699 7 O -0.403 6.403 8 N -0.291 5.291 9 C -0.081 4.081 10 C -0.095 4.095 11 C -0.222 4.222 12 C 0.105 3.895 13 C -0.486 4.486 14 H 0.099 0.901 15 C -0.147 4.147 16 N -0.430 5.430 17 Si 0.743 3.257 18 H -0.185 1.185 19 H -0.199 1.199 20 H -0.199 1.199 21 C -0.156 4.156 22 C -0.050 4.050 23 Cl -0.092 7.092 24 H 0.116 0.884 25 H 0.120 0.880 26 H 0.131 0.869 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.232 0.768 34 H 0.136 0.864 35 H 0.121 0.879 36 H 0.092 0.908 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -5.281 -1.889 -11.426 12.728 hybrid contribution 0.143 0.585 0.488 0.775 sum -5.138 -1.304 -10.937 12.154 Atomic orbital electron populations 1.23918 0.95889 1.02052 1.01733 1.22497 0.95581 0.96671 0.98777 1.19901 0.95758 0.95832 0.94425 1.21942 0.98794 0.96538 1.02767 1.21814 0.99232 1.02656 0.95717 1.20327 0.79786 0.82699 0.87129 1.90668 1.65507 1.37480 1.46603 1.42952 1.44898 1.22042 1.19241 1.16932 1.06352 0.92786 0.91991 1.20391 0.96479 0.96236 0.96437 1.20904 1.05528 0.97025 0.98705 1.17610 0.90594 0.89639 0.91706 1.19543 1.12839 1.15844 1.00329 0.90054 1.25934 0.94297 0.93601 1.00896 1.69749 1.23534 1.14567 1.35200 0.86092 0.79895 0.79016 0.80717 1.18461 1.19857 1.19862 1.21207 1.01053 1.01234 0.92143 1.20425 1.03655 0.84270 0.96650 1.98248 1.84740 1.43078 1.83101 0.88411 0.87984 0.86909 0.91767 0.91277 0.91622 0.91801 0.91378 0.91859 0.76780 0.86437 0.87888 0.90828 0.83827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.21 13.70 29.02 0.40 -1.81 16 2 C -0.12 -1.48 8.00 -36.02 -0.29 -1.77 16 3 C -0.06 -0.71 0.84 -156.81 -0.13 -0.85 16 4 C -0.14 -1.59 7.02 37.16 0.26 -1.33 16 5 C -0.14 -1.39 8.35 37.16 0.31 -1.08 16 6 C 0.51 9.04 6.31 -10.98 -0.07 8.97 16 7 O -0.53 -11.32 13.42 5.56 0.07 -11.24 16 8 N -0.65 -11.60 4.79 -9.71 -0.05 -11.65 16 9 C 0.01 0.29 6.32 -83.52 -0.53 -0.24 16 10 C -0.08 -1.75 8.61 -39.80 -0.34 -2.09 16 11 C -0.20 -4.90 9.74 -39.25 -0.38 -5.28 16 12 C 0.11 2.79 5.55 -106.80 -0.59 2.19 16 13 C -0.46 -11.69 9.02 -37.86 -0.34 -12.03 16 14 H 0.08 2.00 7.85 -52.49 -0.41 1.58 16 15 C 0.07 1.69 5.42 -17.33 -0.09 1.60 16 16 N -0.80 -20.42 10.59 55.55 0.59 -19.83 16 17 Si 0.92 18.46 29.56 -169.99 -5.03 13.43 16 18 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 19 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 20 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 21 C -0.14 -3.42 8.38 -39.23 -0.33 -3.75 16 22 C -0.02 -0.50 6.30 -39.72 -0.25 -0.75 16 23 Cl -0.12 -2.29 27.92 -51.86 -1.45 -3.74 16 24 H 0.10 0.95 8.06 -52.49 -0.42 0.53 16 25 H 0.10 1.03 5.69 -52.49 -0.30 0.73 16 26 H 0.11 1.46 8.06 -52.48 -0.42 1.04 16 27 H 0.06 0.69 7.65 -51.93 -0.40 0.29 16 28 H 0.07 0.61 7.49 -51.93 -0.39 0.22 16 29 H 0.06 0.81 7.50 -51.93 -0.39 0.42 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.60 7.48 -51.93 -0.39 0.21 16 33 H 0.40 6.06 6.90 -40.82 -0.28 5.78 16 34 H 0.12 2.68 6.18 -52.49 -0.32 2.36 16 35 H 0.10 2.35 8.06 -52.49 -0.42 1.92 16 36 H 0.28 6.52 8.30 -40.82 -0.34 6.19 16 37 H 0.14 3.78 6.13 -52.48 -0.32 3.46 16 LS Contribution 322.82 15.07 4.86 4.86 Total: -1.00 -28.30 322.82 -7.82 -36.12 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -4.45 Total: 10.28 kcal Atomic # 6 Polarization: -15.85 SS G_CDS: -2.38 Total: -18.23 kcal Atomic # 7 Polarization: -32.02 SS G_CDS: 0.54 Total: -31.48 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.07 Total: -11.24 kcal Atomic # 14 Polarization: 18.46 SS G_CDS: -5.03 Total: 13.43 kcal Atomic # 17 Polarization: -2.29 SS G_CDS: -1.45 Total: -3.74 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -28.30 -7.82 -36.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411020456.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.482 kcal (2) G-P(sol) polarization free energy of solvation -28.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds