Wall clock time and date at job start Tue Mar 31 2020 07:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50705 * 120.00429 * 2 1 4 4 C 1.53000 * 109.46802 * 0.02562 * 3 2 1 5 5 C 1.52998 * 109.47318 * 239.99906 * 3 2 1 6 6 C 1.50703 * 109.47043 * 119.99823 * 3 2 1 7 7 O 1.21280 * 119.99938 * 0.02562 * 6 3 2 8 8 N 1.34777 * 119.99558 * 180.27985 * 6 3 2 9 9 C 1.39271 * 119.99799 * 175.47694 * 8 6 3 10 10 C 1.39471 * 119.83629 * 34.72317 * 9 8 6 11 11 C 1.36371 * 120.17689 * 179.75983 * 10 9 8 12 12 C 1.40892 * 119.85149 * 0.51178 * 11 10 9 13 13 C 1.41145 * 120.16128 * 179.76176 * 12 11 10 14 14 H 1.08001 * 119.99814 * 34.74879 * 13 12 11 15 15 C 1.39900 * 120.00404 * 214.74837 * 13 12 11 16 16 N 1.30882 * 119.99534 * 355.59795 * 15 13 12 17 17 Si 1.86794 * 120.00422 * 175.60089 * 15 13 12 18 18 H 1.48506 * 109.46969 * 359.97438 * 17 15 13 19 19 H 1.48491 * 109.47566 * 120.00011 * 17 15 13 20 20 H 1.48510 * 109.47089 * 240.00249 * 17 15 13 21 21 C 1.40844 * 119.67931 * 359.74285 * 12 11 10 22 22 C 1.36477 * 119.82248 * 359.97438 * 21 12 11 23 23 Cl 1.73592 * 119.92943 * 179.97438 * 22 21 12 24 24 H 1.07994 * 120.00444 * 180.02562 * 1 2 3 25 25 H 1.08002 * 119.99768 * 0.02562 * 1 2 3 26 26 H 1.08005 * 120.00161 * 179.97438 * 2 1 3 27 27 H 1.09002 * 109.47189 * 180.02562 * 4 3 2 28 28 H 1.09000 * 109.46767 * 299.99888 * 4 3 2 29 29 H 1.08997 * 109.47560 * 59.99608 * 4 3 2 30 30 H 1.09004 * 109.46826 * 299.99886 * 5 3 2 31 31 H 1.09000 * 109.47184 * 59.99541 * 5 3 2 32 32 H 1.08997 * 109.47249 * 180.02562 * 5 3 2 33 33 H 0.96999 * 120.00473 * 355.47333 * 8 6 3 34 34 H 1.07999 * 119.91235 * 0.02562 * 10 9 8 35 35 H 1.07998 * 120.07941 * 180.22625 * 11 10 9 36 36 H 0.96996 * 119.99692 * 179.97438 * 16 15 13 37 37 H 1.08005 * 120.08994 * 180.02562 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 1.0693 2.4680 0.0006 5 6 2.9432 1.3861 -1.2492 6 6 2.9299 1.3849 1.2305 7 8 2.9353 0.4717 2.0286 8 7 3.6949 2.4733 1.4466 9 6 4.4228 2.5893 2.6282 10 6 4.9685 1.4513 3.2217 11 6 5.6866 1.5575 4.3762 12 6 5.8679 2.8196 4.9756 13 6 6.6057 2.9364 6.1732 14 1 7.4540 2.2917 6.3499 15 6 6.2384 3.8873 7.1313 16 7 5.2652 4.7260 6.8812 17 14 7.1367 3.9602 8.7674 18 1 8.1878 2.9116 8.8021 19 1 7.7643 5.2963 8.9286 20 1 6.1718 3.7299 9.8726 21 6 5.3097 3.9641 4.3739 22 6 4.5983 3.8433 3.2155 23 17 3.9085 5.2521 2.4718 24 1 -0.5400 -0.9352 0.0004 25 1 -0.5400 0.9353 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.6143 3.4120 0.0002 28 1 0.4424 2.4105 -0.8891 29 1 0.4430 2.4101 0.8908 30 1 3.6515 0.5575 -1.2491 31 1 2.3166 1.3283 -2.1392 32 1 3.4886 2.3298 -1.2490 33 1 3.7385 3.1758 0.7791 34 1 4.8255 0.4838 2.7635 35 1 6.1115 0.6757 4.8324 36 1 5.0102 5.3851 7.5456 37 1 5.4449 4.9349 4.8275 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411020456.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:03 Heat of formation + Delta-G solvation = -26.155984 kcal Electronic energy + Delta-G solvation = -20937.328913 eV Core-core repulsion = 17704.770241 eV Total energy + Delta-G solvation = -3232.558672 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.63681 -39.54048 -37.34318 -37.23966 -36.16750 -34.78586 -31.96921 -31.30701 -30.60479 -28.32001 -27.10362 -24.99666 -23.62256 -22.82087 -21.52545 -19.72104 -19.32606 -18.44422 -17.71092 -17.17595 -16.52409 -16.30545 -15.95616 -15.51091 -15.23039 -14.87372 -14.60910 -14.39833 -14.10647 -13.50161 -13.36815 -13.31745 -13.18380 -13.08676 -12.80580 -12.71445 -12.63629 -12.29349 -12.14397 -11.94734 -11.74648 -11.64622 -11.57871 -11.24422 -10.82839 -10.62609 -10.26410 -9.41557 -8.83936 -8.56046 -6.40731 0.58814 0.93510 1.30453 1.37942 1.41009 1.44113 1.55909 1.75574 2.22325 2.36883 2.71756 3.50465 3.58118 3.75912 3.99926 4.10012 4.33725 4.46941 4.67289 4.67838 4.76734 4.84405 4.85607 4.90808 4.99350 5.05111 5.19557 5.23888 5.27442 5.28702 5.44474 5.68541 5.73040 5.83165 5.84634 6.01941 6.21066 6.50522 6.60680 6.84434 6.88607 7.29402 8.36286 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.025612 B = 0.004188 C = 0.003866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.968480 B = 6683.488374 C = 7241.586179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.145 4.145 3 C -0.046 4.046 4 C -0.143 4.143 5 C -0.135 4.135 6 C 0.510 3.490 7 O -0.569 6.569 8 N -0.642 5.642 9 C 0.024 3.976 10 C -0.084 4.084 11 C -0.212 4.212 12 C 0.079 3.921 13 C -0.488 4.488 14 H 0.081 0.919 15 C 0.029 3.971 16 N -0.835 5.835 17 Si 0.990 3.010 18 H -0.257 1.257 19 H -0.264 1.264 20 H -0.270 1.270 21 C -0.153 4.153 22 C -0.028 4.028 23 Cl -0.086 7.086 24 H 0.111 0.889 25 H 0.116 0.884 26 H 0.102 0.898 27 H 0.069 0.931 28 H 0.100 0.900 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.094 0.906 32 H 0.071 0.929 33 H 0.412 0.588 34 H 0.120 0.880 35 H 0.108 0.892 36 H 0.287 0.713 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.152 -1.034 -13.387 14.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.163 4.163 3 C -0.049 4.049 4 C -0.200 4.200 5 C -0.192 4.192 6 C 0.299 3.701 7 O -0.447 6.447 8 N -0.287 5.287 9 C -0.070 4.070 10 C -0.104 4.104 11 C -0.232 4.232 12 C 0.076 3.924 13 C -0.518 4.518 14 H 0.100 0.900 15 C -0.184 4.184 16 N -0.462 5.462 17 Si 0.811 3.189 18 H -0.181 1.181 19 H -0.188 1.188 20 H -0.195 1.195 21 C -0.173 4.173 22 C -0.057 4.057 23 Cl -0.057 7.057 24 H 0.129 0.871 25 H 0.134 0.866 26 H 0.120 0.880 27 H 0.088 0.912 28 H 0.118 0.882 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.113 0.887 32 H 0.090 0.910 33 H 0.250 0.750 34 H 0.138 0.862 35 H 0.127 0.873 36 H 0.098 0.902 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -6.368 -1.351 -12.826 14.384 hybrid contribution 0.346 0.399 0.755 0.921 sum -6.022 -0.951 -12.072 13.524 Atomic orbital electron populations 1.24164 0.95357 1.03366 0.99061 1.22518 0.96287 0.96296 1.01236 1.19914 0.95543 0.96805 0.92668 1.21992 0.98571 0.95802 1.03627 1.21856 0.99209 1.02857 0.95304 1.21358 0.79274 0.81324 0.88105 1.90645 1.66734 1.38865 1.48505 1.42955 1.44549 1.22942 1.18240 1.17015 1.05156 0.92098 0.92780 1.20499 0.96590 0.96887 0.96435 1.21049 1.05929 0.96936 0.99265 1.17909 0.91638 0.90400 0.92433 1.19783 1.13602 1.17222 1.01230 0.90048 1.26780 0.94800 0.92719 1.04090 1.69817 1.24683 1.15176 1.36573 0.85022 0.78614 0.79318 0.75932 1.18081 1.18845 1.19487 1.21114 1.02501 1.00441 0.93285 1.20447 1.03129 0.85927 0.96197 1.98244 1.84051 1.41121 1.82285 0.87127 0.86648 0.87966 0.91216 0.88166 0.92984 0.92551 0.88681 0.90961 0.75033 0.86250 0.87346 0.90220 0.85336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.58 13.70 67.79 0.93 -2.65 16 2 C -0.14 -3.44 8.00 25.66 0.21 -3.23 16 3 C -0.05 -1.08 0.84 -53.67 -0.05 -1.13 16 4 C -0.14 -2.73 7.02 71.98 0.51 -2.22 16 5 C -0.13 -2.38 8.35 71.98 0.60 -1.78 16 6 C 0.51 17.50 6.31 87.66 0.55 18.05 16 7 O -0.57 -24.58 13.42 -3.03 -0.04 -24.62 16 8 N -0.64 -22.32 4.79 -303.02 -1.45 -23.77 16 9 C 0.02 1.07 6.32 38.58 0.24 1.31 16 10 C -0.08 -3.97 8.61 22.13 0.19 -3.78 16 11 C -0.21 -10.63 9.74 22.48 0.22 -10.41 16 12 C 0.08 4.24 5.55 -21.28 -0.12 4.12 16 13 C -0.49 -25.87 9.02 23.39 0.21 -25.66 16 14 H 0.08 4.13 7.85 -2.91 -0.02 4.11 16 15 C 0.03 1.45 5.42 85.24 0.46 1.91 16 16 N -0.84 -43.28 10.59 21.82 0.23 -43.05 16 17 Si 0.99 38.06 29.56 68.60 2.03 40.09 16 18 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 19 H -0.26 -9.65 7.11 99.48 0.71 -8.95 16 20 H -0.27 -10.14 7.11 99.48 0.71 -9.43 16 21 C -0.15 -7.90 8.38 22.50 0.19 -7.71 16 22 C -0.03 -1.30 6.30 22.18 0.14 -1.16 16 23 Cl -0.09 -3.17 27.92 -2.72 -0.08 -3.24 16 24 H 0.11 1.86 8.06 -2.91 -0.02 1.83 16 25 H 0.12 1.93 5.69 -2.91 -0.02 1.92 16 26 H 0.10 2.60 8.06 -2.91 -0.02 2.58 16 27 H 0.07 1.26 7.65 -2.39 -0.02 1.24 16 28 H 0.10 1.32 7.49 -2.39 -0.02 1.30 16 29 H 0.05 1.14 7.50 -2.39 -0.02 1.13 16 30 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.07 1.14 7.48 -2.39 -0.02 1.12 16 33 H 0.41 11.76 6.90 -92.71 -0.64 11.12 16 34 H 0.12 5.57 6.18 -2.91 -0.02 5.55 16 35 H 0.11 5.14 8.06 -2.91 -0.02 5.11 16 36 H 0.29 13.51 8.30 -92.71 -0.77 12.74 16 37 H 0.13 6.99 6.13 -2.91 -0.02 6.97 16 Total: -1.00 -62.69 322.82 5.43 -57.26 By element: Atomic # 1 Polarization: 31.21 SS G_CDS: 0.46 Total: 31.67 kcal Atomic # 6 Polarization: -38.62 SS G_CDS: 4.29 Total: -34.33 kcal Atomic # 7 Polarization: -65.59 SS G_CDS: -1.22 Total: -66.82 kcal Atomic # 8 Polarization: -24.58 SS G_CDS: -0.04 Total: -24.62 kcal Atomic # 14 Polarization: 38.06 SS G_CDS: 2.03 Total: 40.09 kcal Atomic # 17 Polarization: -3.17 SS G_CDS: -0.08 Total: -3.24 kcal Total: -62.69 5.43 -57.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411020456.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.101 kcal (2) G-P(sol) polarization free energy of solvation -62.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds