Wall clock time and date at job start Tue Mar 31 2020 06:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.34593 * 124.97062 * 2 1 4 4 C 1.34333 * 110.97194 * 180.02562 * 3 2 1 5 5 N 1.33060 * 134.33345 * 180.02562 * 4 3 2 6 6 C 1.31583 * 120.76303 * 179.97438 * 5 4 3 7 7 C 1.50699 * 118.63189 * 180.28430 * 6 5 4 8 8 S 1.81405 * 109.46832 * 269.73087 * 7 6 5 9 9 C 1.81404 * 102.99977 * 179.97438 * 8 7 6 10 10 C 1.50697 * 109.47011 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00366 * 0.02562 * 10 9 8 12 12 C 1.37885 * 119.99664 * 180.02562 * 10 9 8 13 13 N 1.31509 * 119.99980 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99739 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47116 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47316 * 119.99845 * 14 12 10 17 17 H 1.48503 * 109.46785 * 239.99491 * 14 12 10 18 18 N 1.32054 * 122.73898 * 359.97438 * 6 5 4 19 19 C 1.33031 * 120.91677 * 0.02562 * 18 6 5 20 20 N 1.38313 * 120.86104 * 180.02562 * 19 18 6 21 21 C 1.40186 * 118.27950 * 359.97438 * 19 18 6 22 22 C 1.34086 * 124.96949 * 180.02562 * 2 1 3 23 23 C 1.50696 * 126.95639 * 359.96975 * 22 2 1 24 24 H 1.09003 * 109.46904 * 270.00109 * 1 2 3 25 25 H 1.09001 * 109.46684 * 29.99970 * 1 2 3 26 26 H 1.08995 * 109.47393 * 149.99821 * 1 2 3 27 27 H 1.09005 * 109.47573 * 29.72471 * 7 6 5 28 28 H 1.09001 * 109.47731 * 149.73138 * 7 6 5 29 29 H 1.09005 * 109.47292 * 300.00252 * 9 8 7 30 30 H 1.09004 * 109.47087 * 60.00079 * 9 8 7 31 31 H 0.97007 * 119.99786 * 180.02562 * 13 12 10 32 32 H 0.97007 * 119.99990 * 0.02562 * 20 19 18 33 33 H 0.96999 * 120.00429 * 179.97438 * 20 19 18 34 34 H 1.09000 * 109.47544 * 270.02893 * 23 22 2 35 35 H 1.09007 * 109.47037 * 30.03372 * 23 22 2 36 36 H 1.09002 * 109.46830 * 150.02720 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2784 1.1029 0.0000 4 6 3.5818 0.7780 -0.0006 5 7 4.7143 1.4765 -0.0004 6 6 5.8807 0.8675 -0.0006 7 6 7.1330 1.7058 0.0062 8 16 7.6438 2.0435 -1.7014 9 6 9.1402 3.0467 -1.4889 10 6 9.6949 3.4140 -2.8411 11 1 9.1969 3.0780 -3.7385 12 6 10.8384 4.1791 -2.9324 13 7 11.4445 4.5887 -1.8396 14 14 11.5256 4.6350 -4.6086 15 1 10.6647 4.0555 -5.6708 16 1 11.5549 6.1133 -4.7461 17 1 12.9038 4.0981 -4.7411 18 7 5.9997 -0.4476 -0.0005 19 6 4.9247 -1.2312 -0.0007 20 7 5.0506 -2.6086 -0.0001 21 6 3.6608 -0.6247 -0.0004 22 6 2.2755 -1.0988 -0.0005 23 6 1.8079 -2.5314 -0.0005 24 1 -0.3633 0.0000 1.0277 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3634 -0.8899 -0.5138 27 1 6.9374 2.6472 0.5198 28 1 7.9276 1.1680 0.5235 29 1 8.8940 3.9544 -0.9379 30 1 9.8847 2.4756 -0.9341 31 1 12.2488 5.1272 -1.9039 32 1 5.9314 -3.0151 0.0009 33 1 4.2583 -3.1681 0.0002 34 1 1.6952 -2.8768 1.0271 35 1 0.8492 -2.6007 -0.5145 36 1 2.5413 -3.1529 -0.5143 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413013889.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:25 Heat of formation + Delta-G solvation = 45.975671 kcal Electronic energy + Delta-G solvation = -20010.734721 eV Core-core repulsion = 16815.640369 eV Total energy + Delta-G solvation = -3195.094351 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.88782 -39.95010 -36.20465 -34.23389 -33.10251 -32.78785 -31.26104 -30.07774 -28.54200 -28.20532 -25.52330 -24.02001 -23.12696 -22.10775 -20.34015 -18.67054 -17.69737 -16.91539 -16.81980 -16.46473 -16.27973 -15.39245 -14.81239 -14.34786 -14.08661 -13.99110 -13.79162 -13.57785 -13.40080 -13.17684 -13.04859 -12.65172 -12.57956 -12.37675 -12.25046 -11.85596 -11.61361 -10.85690 -10.77995 -10.60994 -10.10247 -9.73020 -9.54944 -9.42551 -9.20328 -8.81992 -8.57504 -7.94375 -6.60505 -6.15176 -4.18820 0.68692 1.22835 1.97595 2.05642 2.64156 3.08962 3.28907 3.35849 3.42597 3.83330 3.95753 4.01337 4.13596 4.29072 4.40077 4.50514 4.66615 4.85463 5.03388 5.08979 5.19245 5.20163 5.22238 5.30745 5.43625 5.45619 5.71443 5.81881 6.12393 6.14864 6.66229 6.79363 7.00214 7.15217 7.16855 7.44964 7.79779 8.05385 8.28658 8.82967 9.43758 10.96231 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.030357 B = 0.003018 C = 0.002908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.147721 B = 9274.845545 C = 9625.601718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.012 3.988 3 O -0.175 6.175 4 C 0.332 3.668 5 N -0.531 5.531 6 C 0.428 3.572 7 C -0.030 4.030 8 S -0.270 6.270 9 C 0.089 3.911 10 C -0.510 4.510 11 H 0.068 0.932 12 C 0.065 3.935 13 N -0.892 5.892 14 Si 0.907 3.093 15 H -0.270 1.270 16 H -0.281 1.281 17 H -0.282 1.282 18 N -0.572 5.572 19 C 0.496 3.504 20 N -0.828 5.828 21 C -0.298 4.298 22 C -0.144 4.144 23 C -0.083 4.083 24 H 0.085 0.915 25 H 0.081 0.919 26 H 0.092 0.908 27 H 0.105 0.895 28 H 0.105 0.895 29 H 0.039 0.961 30 H 0.039 0.961 31 H 0.265 0.735 32 H 0.411 0.589 33 H 0.409 0.591 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.962 -15.891 6.949 27.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.036 4.036 3 O -0.071 6.071 4 C 0.150 3.850 5 N -0.261 5.261 6 C 0.159 3.841 7 C -0.179 4.179 8 S -0.045 6.045 9 C -0.058 4.058 10 C -0.549 4.549 11 H 0.086 0.914 12 C -0.138 4.138 13 N -0.531 5.531 14 Si 0.734 3.266 15 H -0.194 1.194 16 H -0.207 1.207 17 H -0.208 1.208 18 N -0.300 5.300 19 C 0.245 3.755 20 N -0.373 5.373 21 C -0.309 4.309 22 C -0.147 4.147 23 C -0.140 4.140 24 H 0.103 0.897 25 H 0.100 0.900 26 H 0.110 0.890 27 H 0.123 0.877 28 H 0.124 0.876 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.242 0.758 33 H 0.241 0.759 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -20.726 -15.242 6.102 26.441 hybrid contribution 0.448 -0.201 0.306 0.579 sum -20.278 -15.443 6.408 26.282 Atomic orbital electron populations 1.20392 0.84184 1.04474 1.03854 1.22061 0.93630 0.82573 1.05325 1.83829 1.13254 1.34249 1.75749 1.19273 0.84520 0.87523 0.93676 1.67076 0.94628 1.40500 1.23857 1.21861 0.90267 0.85715 0.86248 1.21941 0.93298 1.00821 1.01888 1.86895 1.39891 1.71976 1.05695 1.21136 0.88290 0.95012 1.01399 1.20694 1.09901 1.33239 0.91104 0.91415 1.24952 0.96148 0.95330 0.97409 1.69964 1.19459 1.36123 1.27528 0.86294 0.78792 0.78217 0.83343 1.19433 1.20731 1.20756 1.67961 1.30247 1.06044 1.25753 1.17841 0.86543 0.86107 0.85012 1.42241 1.12400 1.02077 1.80579 1.20484 0.94014 0.96191 1.20196 1.20477 0.89742 0.96293 1.08156 1.20256 1.01405 0.89887 1.02403 0.89661 0.90001 0.88962 0.87708 0.87635 0.94241 0.94275 0.92562 0.75844 0.75873 0.90760 0.90651 0.91726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.42 10.18 36.00 0.37 -0.06 16 2 C 0.01 0.13 7.24 -35.77 -0.26 -0.13 16 3 O -0.18 -2.64 10.56 4.83 0.05 -2.59 16 4 C 0.33 5.69 8.64 -16.17 -0.14 5.55 16 5 N -0.53 -10.22 10.34 -10.70 -0.11 -10.33 16 6 C 0.43 8.04 6.89 -157.15 -1.08 6.96 16 7 C -0.03 -0.58 6.35 36.00 0.23 -0.35 16 8 S -0.27 -6.30 21.64 -107.50 -2.33 -8.63 16 9 C 0.09 2.35 5.70 36.00 0.21 2.55 16 10 C -0.51 -14.67 9.13 -34.44 -0.31 -14.99 16 11 H 0.07 1.96 7.71 -52.49 -0.40 1.56 16 12 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 13 N -0.89 -26.22 13.29 55.43 0.74 -25.49 16 14 Si 0.91 21.73 29.54 -169.99 -5.02 16.71 16 15 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 N -0.57 -9.86 10.35 -9.85 -0.10 -9.97 16 19 C 0.50 7.12 7.87 -154.75 -1.22 5.90 16 20 N -0.83 -7.79 9.05 31.31 0.28 -7.51 16 21 C -0.30 -4.31 6.34 -105.03 -0.67 -4.98 16 22 C -0.14 -1.53 6.35 -102.80 -0.65 -2.18 16 23 C -0.08 -0.49 9.64 36.00 0.35 -0.14 16 24 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.09 0.33 7.07 -51.93 -0.37 -0.04 16 27 H 0.10 1.92 8.14 -51.92 -0.42 1.49 16 28 H 0.11 1.88 8.14 -51.92 -0.42 1.45 16 29 H 0.04 1.08 8.14 -51.92 -0.42 0.66 16 30 H 0.04 1.06 8.14 -51.92 -0.42 0.64 16 31 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 32 H 0.41 3.35 8.95 -40.82 -0.37 2.98 16 33 H 0.41 2.67 6.20 -40.82 -0.25 2.42 16 34 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 0.31 7.09 -51.92 -0.37 -0.06 16 36 H 0.06 0.33 6.20 -51.93 -0.32 0.01 16 LS Contribution 324.42 15.07 4.89 4.89 Total: -1.00 -34.45 324.42 -9.06 -43.51 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: -4.18 Total: -0.50 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: -3.28 Total: -0.10 kcal Atomic # 7 Polarization: -54.09 SS G_CDS: 0.81 Total: -53.29 kcal Atomic # 8 Polarization: -2.64 SS G_CDS: 0.05 Total: -2.59 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: -6.30 SS G_CDS: -2.33 Total: -8.63 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -34.45 -9.06 -43.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413013889.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.484 kcal (2) G-P(sol) polarization free energy of solvation -34.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds