Wall clock time and date at job start Tue Mar 31 2020 06:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.34593 * 124.97062 * 2 1 4 4 C 1.34333 * 110.97194 * 180.02562 * 3 2 1 5 5 N 1.33060 * 134.33345 * 180.02562 * 4 3 2 6 6 C 1.31583 * 120.76303 * 179.97438 * 5 4 3 7 7 C 1.50699 * 118.63189 * 180.28430 * 6 5 4 8 8 S 1.81405 * 109.46832 * 269.73087 * 7 6 5 9 9 C 1.81404 * 102.99977 * 179.97438 * 8 7 6 10 10 C 1.50697 * 109.47011 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00366 * 0.02562 * 10 9 8 12 12 C 1.37885 * 119.99664 * 180.02562 * 10 9 8 13 13 N 1.31509 * 119.99980 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99739 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47116 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47316 * 119.99845 * 14 12 10 17 17 H 1.48503 * 109.46785 * 239.99491 * 14 12 10 18 18 N 1.32054 * 122.73898 * 359.97438 * 6 5 4 19 19 C 1.33031 * 120.91677 * 0.02562 * 18 6 5 20 20 N 1.38313 * 120.86104 * 180.02562 * 19 18 6 21 21 C 1.40186 * 118.27950 * 359.97438 * 19 18 6 22 22 C 1.34086 * 124.96949 * 180.02562 * 2 1 3 23 23 C 1.50696 * 126.95639 * 359.96975 * 22 2 1 24 24 H 1.09003 * 109.46904 * 270.00109 * 1 2 3 25 25 H 1.09001 * 109.46684 * 29.99970 * 1 2 3 26 26 H 1.08995 * 109.47393 * 149.99821 * 1 2 3 27 27 H 1.09005 * 109.47573 * 29.72471 * 7 6 5 28 28 H 1.09001 * 109.47731 * 149.73138 * 7 6 5 29 29 H 1.09005 * 109.47292 * 300.00252 * 9 8 7 30 30 H 1.09004 * 109.47087 * 60.00079 * 9 8 7 31 31 H 0.97007 * 119.99786 * 180.02562 * 13 12 10 32 32 H 0.97007 * 119.99990 * 0.02562 * 20 19 18 33 33 H 0.96999 * 120.00429 * 179.97438 * 20 19 18 34 34 H 1.09000 * 109.47544 * 270.02893 * 23 22 2 35 35 H 1.09007 * 109.47037 * 30.03372 * 23 22 2 36 36 H 1.09002 * 109.46830 * 150.02720 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2784 1.1029 0.0000 4 6 3.5818 0.7780 -0.0006 5 7 4.7143 1.4765 -0.0004 6 6 5.8807 0.8675 -0.0006 7 6 7.1330 1.7058 0.0062 8 16 7.6438 2.0435 -1.7014 9 6 9.1402 3.0467 -1.4889 10 6 9.6949 3.4140 -2.8411 11 1 9.1969 3.0780 -3.7385 12 6 10.8384 4.1791 -2.9324 13 7 11.4445 4.5887 -1.8396 14 14 11.5256 4.6350 -4.6086 15 1 10.6647 4.0555 -5.6708 16 1 11.5549 6.1133 -4.7461 17 1 12.9038 4.0981 -4.7411 18 7 5.9997 -0.4476 -0.0005 19 6 4.9247 -1.2312 -0.0007 20 7 5.0506 -2.6086 -0.0001 21 6 3.6608 -0.6247 -0.0004 22 6 2.2755 -1.0988 -0.0005 23 6 1.8079 -2.5314 -0.0005 24 1 -0.3633 0.0000 1.0277 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3634 -0.8899 -0.5138 27 1 6.9374 2.6472 0.5198 28 1 7.9276 1.1680 0.5235 29 1 8.8940 3.9544 -0.9379 30 1 9.8847 2.4756 -0.9341 31 1 12.2488 5.1272 -1.9039 32 1 5.9314 -3.0151 0.0009 33 1 4.2583 -3.1681 0.0002 34 1 1.6952 -2.8768 1.0271 35 1 0.8492 -2.6007 -0.5145 36 1 2.5413 -3.1529 -0.5143 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413013889.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:24 Heat of formation + Delta-G solvation = 21.649546 kcal Electronic energy + Delta-G solvation = -20011.789581 eV Core-core repulsion = 16815.640369 eV Total energy + Delta-G solvation = -3196.149211 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.93851 -41.12546 -37.24612 -35.28952 -35.05797 -33.95680 -32.35997 -30.99829 -30.63596 -29.14504 -26.44128 -25.19500 -25.13567 -23.35164 -21.35003 -19.79188 -18.82368 -18.51522 -17.99660 -17.78323 -17.28123 -17.14230 -16.52373 -15.73948 -15.22628 -15.06547 -14.79739 -14.62661 -14.55757 -14.35871 -14.18487 -14.10374 -13.76000 -13.61374 -13.06715 -12.98499 -12.95269 -12.74022 -12.52055 -12.03342 -11.82840 -11.55475 -10.91718 -10.74177 -10.71312 -10.48927 -10.41944 -8.91152 -8.50850 -8.32529 -6.45597 -0.53098 0.06873 0.80197 1.04041 1.22698 1.40968 1.41322 1.56174 1.92115 2.10066 2.37858 2.67791 2.86848 3.02049 3.14225 3.21641 3.65365 3.82417 3.97353 4.15762 4.32303 4.40059 4.54282 4.66846 4.74723 4.81383 4.88386 4.95849 4.96259 5.02096 5.05771 5.50008 5.57746 5.61914 5.80981 5.88389 6.02292 6.55538 6.60955 7.09148 7.21906 8.79787 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.030357 B = 0.003018 C = 0.002908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.147721 B = 9274.845545 C = 9625.601718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.006 3.994 3 O -0.194 6.194 4 C 0.289 3.711 5 N -0.562 5.562 6 C 0.408 3.592 7 C -0.014 4.014 8 S -0.284 6.284 9 C 0.095 3.905 10 C -0.537 4.537 11 H 0.060 0.940 12 C 0.016 3.984 13 N -0.923 5.923 14 Si 0.978 3.022 15 H -0.267 1.267 16 H -0.272 1.272 17 H -0.270 1.270 18 N -0.588 5.588 19 C 0.488 3.512 20 N -0.800 5.800 21 C -0.293 4.293 22 C -0.143 4.143 23 C -0.083 4.083 24 H 0.104 0.896 25 H 0.082 0.918 26 H 0.124 0.876 27 H 0.107 0.893 28 H 0.117 0.883 29 H 0.020 0.980 30 H 0.024 0.976 31 H 0.271 0.729 32 H 0.420 0.580 33 H 0.425 0.575 34 H 0.093 0.907 35 H 0.102 0.898 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.050 -18.243 6.498 30.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.041 4.041 3 O -0.090 6.090 4 C 0.109 3.891 5 N -0.292 5.292 6 C 0.138 3.862 7 C -0.164 4.164 8 S -0.059 6.059 9 C -0.052 4.052 10 C -0.575 4.575 11 H 0.078 0.922 12 C -0.185 4.185 13 N -0.562 5.562 14 Si 0.801 3.199 15 H -0.191 1.191 16 H -0.197 1.197 17 H -0.195 1.195 18 N -0.318 5.318 19 C 0.236 3.764 20 N -0.347 5.347 21 C -0.304 4.304 22 C -0.146 4.146 23 C -0.139 4.139 24 H 0.123 0.877 25 H 0.101 0.899 26 H 0.142 0.858 27 H 0.125 0.875 28 H 0.135 0.865 29 H 0.039 0.961 30 H 0.042 0.958 31 H 0.080 0.920 32 H 0.252 0.748 33 H 0.261 0.739 34 H 0.111 0.889 35 H 0.120 0.880 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -22.853 -17.649 5.658 29.424 hybrid contribution 0.879 0.401 0.547 1.111 sum -21.974 -17.248 6.205 28.616 Atomic orbital electron populations 1.20699 0.80392 1.06059 1.05544 1.23201 0.95474 0.81586 1.03870 1.83825 1.12797 1.36643 1.75727 1.19486 0.84819 0.88907 0.95910 1.66865 0.95631 1.41932 1.24802 1.21487 0.89809 0.86359 0.88533 1.21850 0.94401 1.01548 0.98554 1.86717 1.38031 1.71134 1.09973 1.20823 0.89558 0.94549 1.00290 1.20971 1.10795 1.34201 0.91575 0.92178 1.25893 0.96176 0.94793 1.01593 1.70060 1.19927 1.36411 1.29790 0.85208 0.78247 0.78242 0.78200 1.19144 1.19702 1.19530 1.67892 1.31582 1.05581 1.26757 1.18043 0.86027 0.87543 0.84779 1.42186 1.13868 1.00162 1.78475 1.20843 0.95866 0.95296 1.18440 1.21014 0.87384 0.98752 1.07472 1.20463 1.02833 0.86475 1.04156 0.87734 0.89876 0.85821 0.87471 0.86506 0.96148 0.95803 0.91970 0.74799 0.73911 0.88876 0.87977 0.90795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.58 10.18 71.24 0.73 0.14 16 2 C 0.01 0.12 7.24 24.74 0.18 0.30 16 3 O -0.19 -5.87 10.56 -5.63 -0.06 -5.93 16 4 C 0.29 10.13 8.64 85.06 0.73 10.87 16 5 N -0.56 -22.57 10.34 -300.95 -3.11 -25.68 16 6 C 0.41 15.87 6.89 138.73 0.96 16.83 16 7 C -0.01 -0.57 6.35 71.24 0.45 -0.12 16 8 S -0.28 -13.80 21.64 -56.49 -1.22 -15.02 16 9 C 0.10 5.29 5.70 71.23 0.41 5.70 16 10 C -0.54 -31.78 9.13 25.60 0.23 -31.54 16 11 H 0.06 3.57 7.71 -2.91 -0.02 3.55 16 12 C 0.02 0.95 5.46 84.66 0.46 1.41 16 13 N -0.92 -55.16 13.29 21.45 0.28 -54.87 16 14 Si 0.98 44.78 29.54 68.60 2.03 46.80 16 15 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 16 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 17 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 18 N -0.59 -20.48 10.35 -185.09 -1.92 -22.40 16 19 C 0.49 13.58 7.87 133.37 1.05 14.63 16 20 N -0.80 -13.21 9.05 -54.85 -0.50 -13.70 16 21 C -0.29 -8.25 6.34 -20.13 -0.13 -8.38 16 22 C -0.14 -2.69 6.35 -18.68 -0.12 -2.80 16 23 C -0.08 -0.61 9.64 71.23 0.69 0.08 16 24 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 25 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.12 0.26 7.07 -2.39 -0.02 0.24 16 27 H 0.11 4.15 8.14 -2.39 -0.02 4.14 16 28 H 0.12 4.32 8.14 -2.39 -0.02 4.30 16 29 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.02 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.27 15.01 8.31 -92.70 -0.77 14.24 16 32 H 0.42 5.90 8.95 -92.70 -0.83 5.07 16 33 H 0.43 4.12 6.20 -92.71 -0.58 3.55 16 34 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 35 H 0.10 0.26 7.09 -2.38 -0.02 0.25 16 36 H 0.07 0.42 6.20 -2.39 -0.01 0.41 16 Total: -1.00 -78.44 324.42 0.88 -77.56 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -0.26 Total: 6.13 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: 5.64 Total: 7.10 kcal Atomic # 7 Polarization: -111.41 SS G_CDS: -5.24 Total: -116.65 kcal Atomic # 8 Polarization: -5.87 SS G_CDS: -0.06 Total: -5.93 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.80 kcal Atomic # 16 Polarization: -13.80 SS G_CDS: -1.22 Total: -15.02 kcal Total: -78.44 0.88 -77.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413013889.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.214 kcal (2) G-P(sol) polarization free energy of solvation -78.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds