Wall clock time and date at job start Tue Mar 31 2020 06:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 119.99969 * 2 1 4 4 H 1.48498 * 109.46978 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47269 * 300.00143 * 3 2 1 6 6 H 1.48498 * 109.47193 * 60.00324 * 3 2 1 7 7 C 1.37875 * 120.00104 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00217 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47395 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47330 * 179.97438 * 10 9 7 12 12 H 1.09004 * 109.46635 * 305.00155 * 11 10 9 13 13 N 1.46902 * 109.47033 * 64.99720 * 11 10 9 14 14 C 1.50690 * 109.47278 * 185.00229 * 11 10 9 15 15 N 1.31126 * 126.55526 * 104.97972 * 14 11 10 16 16 C 1.34492 * 105.61910 * 180.02562 * 15 14 11 17 17 C 1.50703 * 126.28978 * 180.02562 * 16 15 14 18 18 C 1.50698 * 109.47198 * 270.00419 * 17 16 15 19 19 C 1.33387 * 125.20518 * 89.71851 * 18 17 16 20 20 C 1.38427 * 114.92135 * 179.86054 * 19 18 17 21 21 C 1.33390 * 114.91912 * 0.42564 * 20 19 18 22 22 S 1.75881 * 109.59608 * 359.77599 * 21 20 19 23 23 N 1.29948 * 107.42516 * 0.02562 * 16 15 14 24 24 O 1.21303 * 110.24669 * 359.97438 * 23 16 15 25 25 H 0.97000 * 119.99706 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.47399 * 59.99392 * 9 7 2 27 27 H 1.08999 * 109.46688 * 299.99812 * 9 7 2 28 28 H 1.09006 * 109.46776 * 59.99898 * 10 9 7 29 29 H 1.09001 * 109.47270 * 300.00297 * 10 9 7 30 30 H 1.00903 * 110.99611 * 60.00329 * 13 11 10 31 31 H 1.00897 * 110.99710 * 183.95431 * 13 11 10 32 32 H 1.08998 * 109.47127 * 30.00470 * 17 16 15 33 33 H 1.09003 * 109.47308 * 150.00238 * 17 16 15 34 34 H 1.07999 * 122.53688 * 0.02562 * 19 18 17 35 35 H 1.08001 * 122.54154 * 180.20256 * 20 19 18 36 36 H 1.07997 * 125.19861 * 179.78749 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 0.0012 12 1 0.7884 -5.0067 0.8433 13 7 0.7280 -5.1188 -1.2537 14 6 2.4548 -6.1297 0.1251 15 7 2.6768 -6.8544 1.1951 16 6 3.6188 -7.7461 0.8396 17 6 4.2188 -8.8096 1.7228 18 6 5.4324 -8.2552 2.4232 19 6 5.4224 -7.6359 3.6046 20 6 6.6624 -7.2137 4.0523 21 6 7.6780 -7.4822 3.2303 22 16 7.0776 -8.3189 1.8045 23 7 3.9166 -7.5221 -0.4053 24 8 3.2588 -6.5976 -0.8345 25 1 -0.4850 0.8401 -0.0004 26 1 0.6246 -2.5571 -0.8896 27 1 0.6241 -2.5566 0.8903 28 1 2.8719 -3.6043 0.8906 29 1 2.8719 -3.6043 -0.8894 30 1 1.3476 -5.1034 -2.0500 31 1 0.1637 -5.9552 -1.2509 32 1 3.4836 -9.1240 2.4636 33 1 4.5100 -9.6657 1.1140 34 1 4.5160 -7.4784 4.1702 35 1 6.7968 -6.7023 4.9940 36 1 8.7111 -7.2254 3.4126 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424333308.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:49 Heat of formation + Delta-G solvation = 88.287694 kcal Electronic energy + Delta-G solvation = -20162.754755 eV Core-core repulsion = 16969.495191 eV Total energy + Delta-G solvation = -3193.259564 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -45.52899 -38.24225 -36.73576 -35.98115 -33.29745 -32.69771 -31.03032 -30.28025 -27.39458 -26.54374 -24.18922 -23.98614 -22.94499 -21.28328 -20.07533 -19.37335 -18.07883 -17.66035 -17.04580 -16.30324 -15.97779 -15.73265 -15.25813 -14.63012 -14.35129 -14.07630 -13.65248 -13.38561 -12.86521 -12.75556 -12.54389 -12.47097 -12.08896 -11.91542 -11.74262 -11.44731 -11.02873 -10.95629 -10.92317 -10.73632 -10.56170 -10.05035 -9.84832 -9.38983 -9.03021 -8.96405 -8.83709 -8.68449 -8.28950 -5.95784 -3.97809 0.69004 1.18987 1.38593 1.76006 2.21974 2.53296 2.89873 3.33667 3.41325 3.45289 3.62481 4.00170 4.46698 4.49376 4.67988 4.79871 4.86387 5.02989 5.29245 5.33354 5.38213 5.40446 5.43177 5.67913 5.78189 5.88723 5.99319 6.04585 6.24369 6.39460 6.56169 6.99593 7.15079 7.49839 7.74166 7.91459 8.08301 8.19381 8.45307 9.09649 9.65642 11.15197 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.016742 B = 0.003474 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.044710 B = 8058.758864 C = 9169.067032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.889 3.111 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.522 4.522 8 H 0.053 0.947 9 C 0.032 3.968 10 C -0.102 4.102 11 C 0.185 3.815 12 H 0.125 0.875 13 N -0.812 5.812 14 C 0.162 3.838 15 N -0.480 5.480 16 C 0.168 3.832 17 C 0.048 3.952 18 C -0.184 4.184 19 C -0.117 4.117 20 C -0.135 4.135 21 C -0.211 4.211 22 S 0.105 5.895 23 N -0.385 5.385 24 O 0.074 5.926 25 H 0.259 0.741 26 H 0.037 0.963 27 H 0.016 0.984 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.349 0.651 31 H 0.340 0.660 32 H 0.114 0.886 33 H 0.100 0.900 34 H 0.145 0.855 35 H 0.143 0.857 36 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.011 -19.626 4.435 22.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.717 3.283 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.561 4.561 8 H 0.071 0.929 9 C -0.005 4.005 10 C -0.140 4.140 11 C 0.070 3.930 12 H 0.143 0.857 13 N -0.341 5.341 14 C -0.061 4.061 15 N -0.213 5.213 16 C -0.106 4.106 17 C 0.008 3.992 18 C -0.303 4.303 19 C -0.148 4.148 20 C -0.165 4.165 21 C -0.346 4.346 22 S 0.369 5.631 23 N -0.094 5.094 24 O 0.017 5.983 25 H 0.069 0.931 26 H 0.056 0.944 27 H 0.034 0.966 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.163 0.837 31 H 0.153 0.847 32 H 0.132 0.868 33 H 0.118 0.882 34 H 0.162 0.838 35 H 0.160 0.840 36 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 10.728 -19.997 3.297 22.931 hybrid contribution 0.432 0.821 1.177 1.498 sum 11.160 -19.176 4.474 22.634 Atomic orbital electron populations 1.69978 1.05934 1.26368 1.50831 1.24975 0.94807 0.99061 0.95412 0.86593 0.80123 0.84058 0.77557 1.19856 1.21017 1.21074 1.21280 0.92974 0.91178 1.50623 0.92876 1.19023 0.93469 0.89606 0.98452 1.21843 0.99267 0.91699 1.01240 1.20855 0.89355 0.87347 0.95402 0.85744 1.58821 1.27073 1.45035 1.03143 1.31234 0.94154 0.98333 0.82372 1.71891 1.16216 1.06750 1.26492 1.25554 0.95335 0.99203 0.90514 1.18259 0.92806 0.92208 0.95956 1.24107 0.97260 1.09076 0.99814 1.20233 0.99244 0.99292 0.96044 1.20210 0.91716 1.02966 1.01655 1.25686 1.03545 1.07244 0.98148 1.84352 0.99641 1.57197 1.21916 1.74584 1.15790 1.05205 1.13817 1.85254 1.39165 1.34816 1.39077 0.93111 0.94440 0.96558 0.92359 0.92425 0.83681 0.84715 0.86767 0.88165 0.83764 0.83977 0.81760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.52 13.29 55.43 0.74 -25.78 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.60 29.54 -169.99 -5.02 16.57 16 4 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.52 -14.56 9.11 -34.44 -0.31 -14.87 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 9 C 0.03 0.78 4.86 -27.88 -0.14 0.65 16 10 C -0.10 -1.99 4.78 -26.73 -0.13 -2.12 16 11 C 0.19 2.93 3.29 -68.87 -0.23 2.70 16 12 H 0.12 1.97 8.14 -51.93 -0.42 1.55 16 13 N -0.81 -11.48 8.68 -5.66 -0.05 -11.53 16 14 C 0.16 2.50 7.31 -13.06 -0.10 2.41 16 15 N -0.48 -7.50 11.55 -9.87 -0.11 -7.61 16 16 C 0.17 2.40 7.45 -156.37 -1.17 1.23 16 17 C 0.05 0.52 6.34 -29.03 -0.18 0.33 16 18 C -0.18 -2.08 5.75 -36.00 -0.21 -2.29 16 19 C -0.12 -1.29 10.05 -41.21 -0.41 -1.70 16 20 C -0.13 -1.35 10.18 -41.21 -0.42 -1.77 16 21 C -0.21 -2.04 11.23 29.04 0.33 -1.72 16 22 S 0.11 1.12 23.33 -107.50 -2.51 -1.38 16 23 N -0.39 -5.95 12.16 30.90 0.38 -5.58 16 24 O 0.07 1.15 11.29 18.10 0.20 1.36 16 25 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 26 H 0.04 0.98 7.75 -51.93 -0.40 0.58 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 29 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.35 4.59 8.98 -39.29 -0.35 4.24 16 31 H 0.34 3.91 9.06 -39.29 -0.36 3.56 16 32 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 35 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 36 H 0.16 1.20 8.06 -52.49 -0.42 0.77 16 LS Contribution 331.81 15.07 5.00 5.00 Total: -1.00 -31.72 331.81 -8.89 -40.62 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -4.46 Total: 3.91 kcal Atomic # 6 Polarization: -12.52 SS G_CDS: -3.06 Total: -15.58 kcal Atomic # 7 Polarization: -51.44 SS G_CDS: 0.95 Total: -50.49 kcal Atomic # 8 Polarization: 1.15 SS G_CDS: 0.20 Total: 1.36 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: 1.12 SS G_CDS: -2.51 Total: -1.38 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.72 -8.89 -40.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424333308.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.903 kcal (2) G-P(sol) polarization free energy of solvation -31.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds